Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0023410 | OGI:05069260 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:26545553-26547600 | ||||||||
| Gene Symbol | OsRab11D3 | ||||||||||
| DNA seq | aatCagagcagacactctcAaacaaacaatggatataggcttcttctgtcaacataatacttgcattgcagtgatagataacaacaccatgatcagtttgatacaaagagcaaatcaagaactgatagtttgaatgatagttggatcaccctaaCcctcaataacaaCACcagaaatgagacaattgaatagatctattacagtataccctgagcatccctacttggaaaaatgaataaattgtgtccctcttgtctttagtttgagcaacatccaactctcttcatcgccgagacatcatctttcacgtttatcttctctccttttcctgggccagccgacccatcctcaggtgcctccAccggcttcttgttcacaatctggtatatctgagtcaggacctccgcgaacgcattgtcgacgttggtagcgtcgagcgcagaagtttccatgaagtacattgattcggcttcagcaaactctttgccgtcctcggttgagacagcCAccaagtggcggagatcggatttgttgccaatcagcatgcagacaatgctaggatcagtgtggtctctaagctcccttagccagcgtcccacgttgtcgaatgtagcacgacgggtgacatcgtagacgagcaatgctcccacagctCcccggtaataggcactagtgatagcacgatacctgaaaagatacaggatgacagttctacataaatacagagctcttcacgcaggACacacaaaaaatagaaaacacaggcaaggtaaaatagcaagagaagataggatgagtggagattctcctcccccattttattttctagcgatgacagagtaaacgaaaacggacgtatcacctagcctaggatgtagttggcagaataTttgcatctctatgctaatctcactcactgctggtaggtggcaactgcaaattcagcagttcagcacaggaagacgttgaatcgtcgtagagctagactaccaggacaggattaaactggtctgtatctagaaaccactgcagctgctgaatgtcaaattcttcacatattggtcaatgacaaattctttgcataatgtttaggagtgccatatgacattcataatcagcactcgtctgataatctaaactccaaagctgaatcacgatggctctagcaaatactccactttatAaaatccggagtaCcaacctgcctgtgtagcagtattagcttcacttgaactcatgtagtcatattgattcacccacatttagcaaatgcatacctttactttctcagtgttttgtgaagaaaaagtatgcaaaggagggcagtcaatttctcccctcccttgaacagaaaaacaacacgtacctaaatttgacatgctaaccaccaatatcaaaattgccaCccatctacccagtagaaacaaccaatggacatctgaacactcgactatcttccagagaaatctgaaccactcgaccacccacagatcccttttttttttaactgaatcgtttcaccaatgctgagatgccagatcccaaaggctcatggcaatttccctagatgactactagatcacaatctcgtaccaaaatagcactgcaagtttagctcctaaacaggcaagaaagcgaacaaatgagcagctgcaaagcccgcaactgcgcgagaaccccaatatcgagcaaacgaggctaaccaagatcgcattttccaacaaatctacacgagcgcgtgcaccagggggtacctctcctggccggcggtgtcccaaatctgggccttgatgaCcCTTGCCGTCGACCTGGAGGCTGCGGGTGGCGAACTCGACGCCGATGGTGGACTTGGACTCGAGGCTGAACTCGTTCTTGGTGAAGCGGGAGAGGAGGTTGGACTTGCCGACGCCGGAGTCGCCGATGAGCACCACCTTGAACAGGTAGTCGTAGTCGTCCTCCGCCCTGTACCCGCCCGCCGCGGCCGCCATTCTCGCCTCGCCTCTCCGAGCTAACGCTGGCTGGTCGGATTTTGGATCTCGCAGGCAGGC
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| CDS seq | ATGGCGGCCGCGGCGGGCGGGTACAGGGCGGAGGACGACTACGACTACCTGTTCAAGGTGGTGCTCATCGGCGACTCCGGCGTCGGCAAGTCCAACCTCCTCTCCCGCTTCACCAAGAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCCTCCAGGTCGACGGCAAGgGtcatcaaggcccagatttgggacaccgccggccaggagagggaggggagaaattgactgccctcctttgcatactttttcttcacaaaacactgagaaagtatcgtgctatcactagtgcctattaccgggGagctgtgggagcattgctcgtctacgatgtcacccgtcgtgctacattcgacaacgtgggacgctggctaagggagcttagagaccacactgatcctagcattgtctgcatgctgattggcaacaaatccgatctccgccacttggTGgctgtctcaaccgaggacggcaaagagtttgctgaagccgaatcaatgtacttcatggaaacttctgcgctcgacgctaccaacgtcgacaatgcgttcgcggaggtcctgactcagatataccagattgtgaacaagaagccggTggaggcacctgaggatgggtcggctggcccaggaaaaggagagaagataaacgtgaaagatgatgtctcggcgatgaagagagttggatgttgctcaaactaa
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| Protein seq | MAAAAGGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLQVDGKGHQGPDLGHRRPGEGGEKLTALLCILFLHKTLRKYRAITSAYYRGAVGALLVYDVTRRATFDNVGRWLRELRDHTDPSIVCMLIGNKSDLRHLVAVSTEDGKEFAEAESMYFMETSALDATNVDNAFAEVLTQIYQIVNKKPVEAPEDGSAGPGKGEKINVKDDVSAMKRVGCCSN |
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| Function | Ras-related protein RIC2 [UniProtKB/Swiss-Prot:P40393] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0023410 | OsGoSa_05g0023410.01 | Chr05 | 26545553 | 26547600 | - | NAM | ||
| CDS seq | ATGGCGGCCGCGGCGGGCGGGTACAGGGCGGAGGACGACTACGACTACCTGTTCAAGGTGGTGCTCATCGGCGACTCCGGCGTCGGCAAGTCCAACCTCCTCTCCCGCTTCACCAAGAACGAGTTCAGCCTCGAGTCCAAGTCCACCATCGGCGTCGAGTTCGCCACCCGCAGCCTCCAGGTCGACGGCAAGgGtcatcaaggcccagatttgggacaccgccggccaggagagggaggggagaaattgactgccctcctttgcatactttttcttcacaaaacactgagaaagtatcgtgctatcactagtgcctattaccgggGagctgtgggagcattgctcgtctacgatgtcacccgtcgtgctacattcgacaacgtgggacgctggctaagggagcttagagaccacactgatcctagcattgtctgcatgctgattggcaacaaatccgatctccgccacttggTGgctgtctcaaccgaggacggcaaagagtttgctgaagccgaatcaatgtacttcatggaaacttctgcgctcgacgctaccaacgtcgacaatgcgttcgcggaggtcctgactcagatataccagattgtgaacaagaagccggTggaggcacctgaggatgggtcggctggcccaggaaaaggagagaagataaacgtgaaagatgatgtctcggcgatgaagagagttggatgttgctcaaactaa
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| Protein seq | MAAAAGGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLQVDGKGHQGPDLGHRRPGEGGEKLTALLCILFLHKTLRKYRAITSAYYRGAVGALLVYDVTRRATFDNVGRWLRELRDHTDPSIVCMLIGNKSDLRHLVAVSTEDGKEFAEAESMYFMETSALDATNVDNAFAEVLTQIYQIVNKKPVEAPEDGSAGPGKGEKINVKDDVSAMKRVGCCSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 9.086975 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0516800 | RBH | 0.0 | 0.0 | 4.927462 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44070 | RBH | 0.0 | 0.0 | 1.257789 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0516800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023650 | RBH | 0.0 | 8.238772 | 5.798880 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023550 | RBH | 0.0 | 4.359910 | 1.618271 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023500 | RBH | 0.0 | 13.138307 | 2.755859 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023480 | RBH | 0.0 | 0.898344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023580 | RBH | 0.0 | 43.698990 | 5.749777 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0396800 | RBH | 4.2428055 | 16.007367 | 2.9371765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023160 | RBH | 0.0 | 3.451490 | 0.533816 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0407300 | RBH | 4.556611 | 12.2130305 | 6.875704 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023330 | RBH | 0.0 | 0.686611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023240 | RBH | 0.0 | 29.689503 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032850 | RBH | 0.0 | 5.846533 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023430 | RBH | 0.0 | 1.614008 | 1.731990 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023450 | RBH | 0.0 | 21.585098 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022900 | RBH | 0.0 | 23.238832 | 7.500288 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023280 | RBH | 0.0 | 22.758434 | 6.025198 |
