Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0023280 | OGI:05069050 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:26462390-26464349 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcggccgtgcagctcgacttcggcctgctcgtcggctttctcttcttggcgacgtgcttggccgtcgcgattaggagctacctgagatcgggtggcgcggcgatcccgtcgccgccggcgttgccggtcatcggcaacctccaccagctcggccgcgggcggcaccaccgggcgctgcgcgagctcgcgcggcggcacggcccgctgttccagctccggctcggctccgtgcgcgcgctcgtcgtctcctcggcgcccatggcggaggccgtgctcaggcaccaggaccacgtgttctgcggccggccgcagcagcgcacggcgcggggcacgctgtacggctgccgggacgtcgcgttcagcccctacggcgagcggtggcgccgcctccgccgcgtcgccgtcgtgcgcctcctcagcgcgaggcgggtcgactcgttccgcgccctccgggaggaggaggtcgcgtcgttcgtgaaccggatccgcgcggcgagcggcggaggcgtcgtcaacttgaccgagctcatcgtcggcctcacccacgccgtcgtgtcgagggctgcgttcgggaagaagctcggcggcgtcgatccggcgaaggtccgcgagacgataggcgagctcgccgacctgctcgagacgatcgcggtgagcgacatgttcccgcggctccggtgggtggactgggcgacggggctcgacgcgaggacgaagaggacggcggccaagctcgacgaggttctcgagatggcgctccgtgaccacgagcagagccgcggggacgacgacgacggcggcggcggcgacggcgagccccgtgacctgatggacgacctgctctccatggccaacgacggcggcggcgaccatggccacaagctcgacaggatcgatgtcaagggactcatcttggtaagtcctctccaattatcaccaatcaaataatcattgctaaatcaaataattcgtctcaatttctttcatgtcgcattgccaggacatgttcatagcaggcacggacacaatatacaaatcgatagaatggacgatggccgagctcatcaagaacccagcagaaatggcgaaggtccaagccgaggtgagacatgtcgccgcagctgcacacggagacgaagacgaagacaccgtcgccgtcgtcagggagcagcagctggggaagatgaccctcctccgggcggcgatgaaggaggcgatgcgcctccacccgccggtgccgctgctcatcccgcgcgaggcgatcgaggacacggtgctccacggccaccgcgtcgcggcggggacgcgcgtgatgatcaacgcgtgggcgatcgggagggacgaggcggcgtgggagggcgcggcggagttcaggccggggaggttcgccggcggcggggacgccgccggcgtcgagtactacggcggcggcgacttccggttcgtgccgttcggcgccggcaggaGgggttgccccggcgtggcgttcgggacgcggctcgcggagctcgcggtggcgaacatggcgtgctggtttgagtgggagctccccgatgggcaggacgtggagtcgttcgaggtcgtcgagtcgagcggtttgtcgcctgggctcatcaaccccttggtcctcgccgcgaaacctctcaaataagtaatccctccatctcaaaatataacaatttttaccgctcaatatttatctcaaaatacaacaatttcttcactaacatttcatttccaaccgatcacaatcctccactatttaacttttccacctacctctacttctcaattaatcgcaacctctctctatttaattttacctactttcttaataactgtgtccaattctaaacttcttatattttagatcagaggtagtacaagttttgttttcaattctcaagtgtatataacatagtactaagatatacaacaactgtagtaagcttcatga
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| CDS seq | atggcggccgtgcagctcgacttcggcctgctcgtcggctttctcttcttggcgacgtgcttggccgtcgcgattaggagctacctgagatcgggtggcgcggcgatcccgtcgccgccggcgttgccggtcatcggcaacctccaccagctcggccgcgggcggcaccaccgggcgctgcgcgagctcgcgcggcggcacggcccgctgttccagctccggctcggctccgtgcgcgcgctcgtcgtctcctcggcgcccatggcggaggccgtgctcaggcaccaggaccacgtgttctgcggccggccgcagcagcgcacggcgcggggcacgctgtacggctgccgggacgtcgcgttcagcccctacggcgagcggtggcgccgcctccgccgcgtcgccgtcgtgcgcctcctcagcgcgaggcgggtcgactcgttccgcgccctccgggaggaggaggtcgcgtcgttcgtgaaccggatccgcgcggcgagcggcggaggcgtcgtcaacttgaccgagctcatcgtcggcctcacccacgccgtcgtgtcgagggctgcgttcgggaagaagctcggcggcgtcgatccggcgaaggtccgcgagacgataggcgagctcgccgacctgctcgagacgatcgcggtgagcgacatgttcccgcggctccggtgggtggactgggcgacggggctcgacgcgaggacgaagaggacggcggccaagctcgacgaggttctcgagatggcgctccgtgaccacgagcagagccgcggggacgacgacgacggcggcggcggcgacggcgagccccgtgacctgatggacgacctgctctccatggccaacgacggcggcggcgaccatggccacaagctcgacaggatcgatgtcaagggactcatcttggacatgttcatagcaggcacggacacaatatacaaatcgatagaatggacgatggccgagctcatcaagaacccagcagaaatggcgaaggtccaagccgaggtgagacatgtcgccgcagctgcacacggagacgaagacgaagacaccgtcgccgtcgtcagggagcagcagctggggaagatgaccctcctccgggcggcgatgaaggaggcgatgcgcctccacccgccggtgccgctgctcatcccgcgcgaggcgatcgaggacacggtgctccacggccaccgcgtcgcggcggggacgcgcgtgatgatcaacgcgtgggcgatcgggagggacgaggcggcgtgggagggcgcggcggagttcaggccggggaggttcgccggcggcggggacgccgccggcgtcgagtactacggcggcggcgacttccggttcgtgccgttcggcgccggcaggaGgggttgccccggcgtggcgttcgggacgcggctcgcggagctcgcggtggcgaacatggcgtgctggtttgagtgggagctccccgatgggcaggacgtggagtcgttcgaggtcgtcgagtcgagcgcttcatga
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| Protein seq | MAAVQLDFGLLVGFLFLATCLAVAIRSYLRSGGAAIPSPPALPVIGNLHQLGRGRHHRALRELARRHGPLFQLRLGSVRALVVSSAPMAEAVLRHQDHVFCGRPQQRTARGTLYGCRDVAFSPYGERWRRLRRVAVVRLLSARRVDSFRALREEEVASFVNRIRAASGGGVVNLTELIVGLTHAVVSRAAFGKKLGGVDPAKVRETIGELADLLETIAVSDMFPRLRWVDWATGLDARTKRTAAKLDEVLEMALRDHEQSRGDDDDGGGGDGEPRDLMDDLLSMANDGGGDHGHKLDRIDVKGLILDMFIAGTDTIYKSIEWTMAELIKNPAEMAKVQAEVRHVAAAAHGDEDEDTVAVVREQQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAAGTRVMINAWAIGRDEAAWEGAAEFRPGRFAGGGDAAGVEYYGGGDFRFVPFGAGRRGCPGVAFGTRLAELAVANMACWFEWELPDGQDVESFEVVESSAS |
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| Function | Cytochrome P450 71A1 [UniProtKB/Swiss-Prot:P24465] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0023280 | OsGoSa_05g0023280.01 | Chr05 | 26462390 | 26464349 | + | NAM | ||
| CDS seq | atggcggccgtgcagctcgacttcggcctgctcgtcggctttctcttcttggcgacgtgcttggccgtcgcgattaggagctacctgagatcgggtggcgcggcgatcccgtcgccgccggcgttgccggtcatcggcaacctccaccagctcggccgcgggcggcaccaccgggcgctgcgcgagctcgcgcggcggcacggcccgctgttccagctccggctcggctccgtgcgcgcgctcgtcgtctcctcggcgcccatggcggaggccgtgctcaggcaccaggaccacgtgttctgcggccggccgcagcagcgcacggcgcggggcacgctgtacggctgccgggacgtcgcgttcagcccctacggcgagcggtggcgccgcctccgccgcgtcgccgtcgtgcgcctcctcagcgcgaggcgggtcgactcgttccgcgccctccgggaggaggaggtcgcgtcgttcgtgaaccggatccgcgcggcgagcggcggaggcgtcgtcaacttgaccgagctcatcgtcggcctcacccacgccgtcgtgtcgagggctgcgttcgggaagaagctcggcggcgtcgatccggcgaaggtccgcgagacgataggcgagctcgccgacctgctcgagacgatcgcggtgagcgacatgttcccgcggctccggtgggtggactgggcgacggggctcgacgcgaggacgaagaggacggcggccaagctcgacgaggttctcgagatggcgctccgtgaccacgagcagagccgcggggacgacgacgacggcggcggcggcgacggcgagccccgtgacctgatggacgacctgctctccatggccaacgacggcggcggcgaccatggccacaagctcgacaggatcgatgtcaagggactcatcttggacatgttcatagcaggcacggacacaatatacaaatcgatagaatggacgatggccgagctcatcaagaacccagcagaaatggcgaaggtccaagccgaggtgagacatgtcgccgcagctgcacacggagacgaagacgaagacaccgtcgccgtcgtcagggagcagcagctggggaagatgaccctcctccgggcggcgatgaaggaggcgatgcgcctccacccgccggtgccgctgctcatcccgcgcgaggcgatcgaggacacggtgctccacggccaccgcgtcgcggcggggacgcgcgtgatgatcaacgcgtgggcgatcgggagggacgaggcggcgtgggagggcgcggcggagttcaggccggggaggttcgccggcggcggggacgccgccggcgtcgagtactacggcggcggcgacttccggttcgtgccgttcggcgccggcaggaGgggttgccccggcgtggcgttcgggacgcggctcgcggagctcgcggtggcgaacatggcgtgctggtttgagtgggagctccccgatgggcaggacgtggagtcgttcgaggtcgtcgagtcgagcgcttcatga
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| Protein seq | MAAVQLDFGLLVGFLFLATCLAVAIRSYLRSGGAAIPSPPALPVIGNLHQLGRGRHHRALRELARRHGPLFQLRLGSVRALVVSSAPMAEAVLRHQDHVFCGRPQQRTARGTLYGCRDVAFSPYGERWRRLRRVAVVRLLSARRVDSFRALREEEVASFVNRIRAASGGGVVNLTELIVGLTHAVVSRAAFGKKLGGVDPAKVRETIGELADLLETIAVSDMFPRLRWVDWATGLDARTKRTAAKLDEVLEMALRDHEQSRGDDDDGGGGDGEPRDLMDDLLSMANDGGGDHGHKLDRIDVKGLILDMFIAGTDTIYKSIEWTMAELIKNPAEMAKVQAEVRHVAAAAHGDEDEDTVAVVREQQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAAGTRVMINAWAIGRDEAAWEGAAEFRPGRFAGGGDAAGVEYYGGGDFRFVPFGAGRRGCPGVAFGTRLAELAVANMACWFEWELPDGQDVESFEVVESSAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.097607 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0515200 | RBH | 1.704645 | 1.989776 | 0.474433 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g43910 | RBH | 1.153176 | 1.391928 | 0.122344 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0515200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023530 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023430 | RBH | 0.564152 | 0.000000 | 0.415418 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0023380 | RBH | 0.706620 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023360 | RBH | 0.046275 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023460 | RBH | 0.968181 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0395500 | RBH | 0.3827915 | 0 | 0.1035645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023040 | RBH | 0.0 | 0.0 | 0.080224 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0405800 | RBH | 5.627213 | 0.008223 | 0.0126655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023110 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023310 | RBH | 0.075042 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G022780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023160 | RBH | 1.235574 | 0.0 | 0.923304 |
