Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0020090 | OGI:05062470 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:23781424-23786218 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gttgaaacttgaaacacatttctattgatgagttgggtgaagtacatcagagtaagtgacagctatacatatatgcaacaaggaaccttttcttcttctcatatttacatgcacgagcaagtttgcattcatctctgaaaacagggtttcgatgccaaccaaggactgccctgaaaaaaacggaaaagccaaatcctggtgcaaatggaacttcagaaaaacgatccatcccgtataaacacatttggttgacatctcactgataggcatatgagagccacggatgctgcaatgcttcactggctgttggtctctttctggggttgatttgtaacaggtaggaaagaaatttaacaaatttggtgtcggggcactgcaagcgacgccgcaaggaaatcttctctgggatcaagtactccaactgatccgtctcctaaaacaagttggacaagaaattaatggcatcgcttgaacaacactggcaacagtaccaaactgagtgacggggaacaactgaaattcttgttctaaagatcacgctaacaaacaacagtgtcagccaaaacgcctgagttgggaaccagatccacacgaaagtacagaaacaatctgggtgcccaatcacagaagaccttgggcaaagaaacattaagatgacaggaacataaggctctcagtttctgactaaactttctaccaccaatataacatactagagttttagttgtcagctatcatttcttaacgactcaaaatattttctataacaagatttagagtgaagcttcacttgatataagattctacagaaacaaaaaaaaatgcaactgtttaaaactgagtagtaaggaggaacatggcagtatggcaccaaatgagctaagtgcagttcctaagagagatttaattgtcaattatattgtcggtggtattcaacatttaaagcatgtagcacaaagaggatccaaaaagagagatcaaatcttgcatatcatccactgattattggttcaaataagagttgcatcataaagtagcaaaaaacgttggttttgttaaattaaattggtttcttaatcttaagtattgacaatacgtccagcacagaagaaagtacacaagaaatagcatgtacctcattcttgtggaacaggtcgtagtcttctgtaaagtacttctgggtatcttgtcccagtgcaagcatttccatgtcaattggaccaattgtccctatcatccgagcaagaattatttgtactgattcatttggaaagagcacctgccacatgtataagaaagatctcaatcacattatctctgtgagaaaaaaaaaagagagcattggcttatttggtttacagttacaaaacaatttttatgtttcaagtacttttaacaaaagtggtaaatactaaatacaatatcttcaattggaactagataaaaagaaacatgatggggattccccggtatatttacagttactaatagatcatttcttaaatttggtaaatgttctgcagataagccataagcacttgaatcactcttccaatttctgcatacagtttcttaaaattaataacagtgttgcgataacaatgaaggttctaccaatatttcaagactatgacaattgaggaggtggtaattttcttgggatgaactgaatagttatacaagaaagaacattagccacaagcccacaatcaaaaccttgactgcagcaattgcgggatgagttaaaaggcacaataattcatttaaccatggacaaatcctggtttgtacttttcttttccttcgactgagtaaatacatcaatttccctagacaaaatgtaagcatgtcgtgacaatgtaatatagtaccgacaaatggacattagtaagtaaagatgaatagttgaaaacttacttcaccagtgtacagttcagccaagatgcatccgagagaccaaatgtcaatcttctgatcatatggaagacctagaatgacttcaggagctctgtaagaacgtgactggacatataagcttaagttgtctgtcaagaagcaactacttccaagatcaataaccttaatttcacatctgctgtaactcttcatgaggatattctctggtttaaggtcacagtgaacgatatttaaatgatgcaaatacaccagagcttctaagcattgtcgagctatagcctgaaaaacaacaacatatcatatttcagcaggattttttatgtttttacagcataacttaatcatgctagaagtatttattttaaccttccataaaagagaatgtcagagaaatattaatcatggaagatcaatggatgaagagatctttctctacaactatttttcttaagagaaatttctttacaactgaagtgtattgcaacaacagaagtaaacacttttgcatcgttccatgatttctttagtaatgaaggcttcataaaattaacagacaaaatgatggttacaagctttcataacaacacaaccggagatactctcagggaaaagggaataacagtcaggcatacctgtattctgcgcaatgagaagtacacttcatcaccaaactcttggttatatttttgaaattcatacagattcgcccgtagcaattcagtgacaatgaaaagatgttcctgtcatttttttagatgacagcattccacagggtacaaaatgagattgagtaaagcacaccaaaagattgtgttcattttatctttacatcacatacctgatagtagaaaaaatcgtaaaggcgcaatatatgatgttcatcatcaggatcgtatttgtttacaaatttaaggagctttatctcgtccaagctctggtcaaagaaatccttgtcattttttattattttcaggcagacatccattcccgtccaaaaatcctgtgcccgtacaaccttgctgaatgcagctgagccaagatactcagtgatgcgatatcttccacctacaactgaattcatgacaatagggaactctttgttttcctcaaaaccagtcctgcaaagaacacttatgacatgagcatggaaagtatatttacatgatggcggaagaataaacaaaaaaaAGaaagcatctgatgacgaacctgttcttccggtggaaaattctcagctcaaatacctcatattcctcatgaaatctagaaagtgcaagatcaatatctgttctcgcatcttcagtgattttattggctgtagaattttgaacacttgtatctgttcgtccaaagtcctccatctcataaacatctagaggatcacctatctcaggtaaagaatgtatgctgtaactattttttagaagttctttgtcatcggcagttttctcgtttgtaacaatgttaatatctagttccccattgccgctgaaatcgtgttcaagctcagcctctgcaagagataaccacaattaaaaccaactagtccacaagaaaacaaaactttgcaaggataagtgaaataaattctgagaaatgaactgagtattctggatccagtacaacaacaaaattaatgagcttcaaggatttcgtgaactgcaagattgaacataattaagaggacaagtcagaaaatactcactctcaagagcatctgcctcagccaaatacggactgagcatctgaagctccttctccaccgtactcatgtccagcaactcgatatctccgcctttggaatcaattggctgttcacttttgagcatggcatctccatcccgtgtgaacaggaatgcatctgcaccacactcatccagcacctctgtctggtcatccatgatcaggtacctcccatagacagcagagcaagaatccctcgtcaacccatcatcattcttcctccctccgtagcagcagctgcagggcgctgaagagcagatatacacttccgcgcaggcttcagcgtcggccttggatttcgtgtgcacttggtggcggccgccgcaatcgtcgagctcacgcgtttcgctccactgggcggtagagtcagcaccaacgatgaacttgtcctctccattgccctcgtcgccgtccgaattggtgtggaagaggtggtcgtcgtagagccaattctcgccgaagaagagatcggtggtgtcgtactcgcgcgcggtgccgaactccatctccgacgacgacgcctccgacggcggcgcgcgcggcgaccacacgccgtacggattcatcagccctgacatcaacccaaaaacagcaaccaccaccaccaaacagattgacaaattttggaccagaattcgagcaaaaagaaaaacagacaatttgaggcggcgcgtctcccaatcacgcgcggagagatcgagatcatactgccccaggcacacgcttcctctctctggaggagattttgtactgttcgcacgcattgatgaagcaaaatttacctgatggcgtggagctcatgctgaggaaggagtcggagtcggagccggagctggacccagggaacgcggcgaaggaggtgggcatccgcaacggcggcagcttcgggtcgtcgtcgagcacctcctcctcctcccgcagcggcgacggcgccgccgagcgcgcgaagccgtgctccgcggccgggaggaagcccatcgccgccccctccgcgcccagcgccgacattgcccccccgcgatctcacactccctcacctcacctcacgccgccgccatcctcccaaacctccgaagcgaagcacccggagcgcgcggagatcgcgacgccaagtttactactactagaagtctac
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| CDS seq | atgtcggcgctgggcgcggagggggcggcgatgggcttcctcccggccgcggagcacggcttcgcgcgctcggcggcgccgtcgccgctgcgggaggaggaggaggtgctcgacgacgacccgaagctgccgccgttgcggatgcccacctccttcgccgcgttccctgggtccagctccggctccgactccgactccttcctcagcatgagctccacgccatcagggctgatgaatccgtacggcgtgtggtcgccgcgcgcgccgccgtcggaggcgtcgtcgtcggagatggagttcggcaccgcgcgcgagtacgacaccaccgatctcttcttcggcgagaattggctctacgacgaccacctcttccacaccaattcggacggcgacgagggcaatggagaggacaagttcatcgttggtgctgactctaccgcccagtggagcgaaacgcgtgagctcgacgattgcggcggccgccaccaagtgcacacgaaatccaaggccgacgctgaagcctgcgcggaagtgtatatctgctcttcagcgccctgcagctgctgctacggagggaggaagaatgatgatgggttgacgagggattcttgctctgctgtctatgggaggtacctgatcatggatgaccagacagaggtgctggatgagtgtggtgcagatgcattcctgttcacacgggatggagatgccatgctcaaaagtgaacagccaattgattccaaaggcggagatatcgagttgctggacatgagtacggtggagaaggagcttcagatgctcagtccgtatttggctgaggcagatgctcttgagaaggctgagcttgaacacgatttcagcggcaatggggaactagatattaacattgttacaaacgagaaaactgccgatgacaaagaacttctaaaaaatagttacagcatacattctttacctgagataggtgatcctctagatgtttatgagatggaggactttggacgaacagatacaagtgttcaaaattctacagccaataaaatcactgaagatgcgagaacagatattgatcttgcactttctagatttcatgaggaatatgaggtatttgagctgagaattttccaccggaagaacaggactggttttgaggaaaacaaagagttccctattgtcatgaattcagttgtaggtggaagatatcgcatcactgagtatcttggctcagctgcattcagcaaggttgtacgggcacaggatttttggacgggaatggatgtctgcctgaaaataataaaaaatgacaaggatttctttgaccagagcttggacgagataaagctccttaaatttgtaaacaaatacgatcctgatgatgaacatcatatattgcgcctttacgattttttctactatcaggaacatcttttcattgtcactgaattgctacgggcgaatctgtatgaatttcaaaaatataaccaagagtttggtgatgaagtgtacttctcattgcgcagaatacaggctatagctcgacaatgcttagaagctctggtgtatttgcatcatttaaatatcgttcactgtgaccttaaaccagagaatatcctcatgaagagttacagcagatgtgaaattaaggttattgatcttggaagtagttgcttcttgacagacaacttaagcttatatgtccagtcacgttcttacagagctcctgaagtcattctaggtcttccatatgatcagaagattgacatttggtctctcggatgcatcttggctgaactgtacactggtgaagtgctctttccaaatgaatcagtacaaataattcttgctcggatgatagggacaattggtccaattgacatggaaatgcttgcactgggacaagatacccagaagtactttacagaagactacgacctgttccacaagaatgaggagacggatcagttggagtacttgatcccagagaagatttccttgcggcgtcgcttgcagtgccccgacaccaaatttgttaaatttctttcctacctgttacaaatcaaccccagaaagagaccaacagccagtgaagcattgcagcatccgtggctctcatatgcctatcagtga
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| Protein seq | MSALGAEGAAMGFLPAAEHGFARSAAPSPLREEEEVLDDDPKLPPLRMPTSFAAFPGSSSGSDSDSFLSMSSTPSGLMNPYGVWSPRAPPSEASSSEMEFGTAREYDTTDLFFGENWLYDDHLFHTNSDGDEGNGEDKFIVGADSTAQWSETRELDDCGGRHQVHTKSKADAEACAEVYICSSAPCSCCYGGRKNDDGLTRDSCSAVYGRYLIMDDQTEVLDECGADAFLFTRDGDAMLKSEQPIDSKGGDIELLDMSTVEKELQMLSPYLAEADALEKAELEHDFSGNGELDINIVTNEKTADDKELLKNSYSIHSLPEIGDPLDVYEMEDFGRTDTSVQNSTANKITEDARTDIDLALSRFHEEYEVFELRIFHRKNRTGFEENKEFPIVMNSVVGGRYRITEYLGSAAFSKVVRAQDFWTGMDVCLKIIKNDKDFFDQSLDEIKLLKFVNKYDPDDEHHILRLYDFFYYQEHLFIVTELLRANLYEFQKYNQEFGDEVYFSLRRIQAIARQCLEALVYLHHLNIVHCDLKPENILMKSYSRCEIKVIDLGSSCFLTDNLSLYVQSRSYRAPEVILGLPYDQKIDIWSLGCILAELYTGEVLFPNESVQIILARMIGTIGPIDMEMLALGQDTQKYFTEDYDLFHKNEETDQLEYLIPEKISLRRRLQCPDTKFVKFLSYLLQINPRKRPTASEALQHPWLSYAYQ |
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| Function | DYRK-family kinase pom1 [UniProtKB/Swiss-Prot:Q09690] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0020090 | OsGoSa_05g0020090.01 | Chr05 | 23781424 | 23786218 | - | NAM | ||
| CDS seq | atgtcggcgctgggcgcggagggggcggcgatgggcttcctcccggccgcggagcacggcttcgcgcgctcggcggcgccgtcgccgctgcgggaggaggaggaggtgctcgacgacgacccgaagctgccgccgttgcggatgcccacctccttcgccgcgttccctgggtccagctccggctccgactccgactccttcctcagcatgagctccacgccatcagggctgatgaatccgtacggcgtgtggtcgccgcgcgcgccgccgtcggaggcgtcgtcgtcggagatggagttcggcaccgcgcgcgagtacgacaccaccgatctcttcttcggcgagaattggctctacgacgaccacctcttccacaccaattcggacggcgacgagggcaatggagaggacaagttcatcgttggtgctgactctaccgcccagtggagcgaaacgcgtgagctcgacgattgcggcggccgccaccaagtgcacacgaaatccaaggccgacgctgaagcctgcgcggaagtgtatatctgctcttcagcgccctgcagctgctgctacggagggaggaagaatgatgatgggttgacgagggattcttgctctgctgtctatgggaggtacctgatcatggatgaccagacagaggtgctggatgagtgtggtgcagatgcattcctgttcacacgggatggagatgccatgctcaaaagtgaacagccaattgattccaaaggcggagatatcgagttgctggacatgagtacggtggagaaggagcttcagatgctcagtccgtatttggctgaggcagatgctcttgagaaggctgagcttgaacacgatttcagcggcaatggggaactagatattaacattgttacaaacgagaaaactgccgatgacaaagaacttctaaaaaatagttacagcatacattctttacctgagataggtgatcctctagatgtttatgagatggaggactttggacgaacagatacaagtgttcaaaattctacagccaataaaatcactgaagatgcgagaacagatattgatcttgcactttctagatttcatgaggaatatgaggtatttgagctgagaattttccaccggaagaacaggactggttttgaggaaaacaaagagttccctattgtcatgaattcagttgtaggtggaagatatcgcatcactgagtatcttggctcagctgcattcagcaaggttgtacgggcacaggatttttggacgggaatggatgtctgcctgaaaataataaaaaatgacaaggatttctttgaccagagcttggacgagataaagctccttaaatttgtaaacaaatacgatcctgatgatgaacatcatatattgcgcctttacgattttttctactatcaggaacatcttttcattgtcactgaattgctacgggcgaatctgtatgaatttcaaaaatataaccaagagtttggtgatgaagtgtacttctcattgcgcagaatacaggctatagctcgacaatgcttagaagctctggtgtatttgcatcatttaaatatcgttcactgtgaccttaaaccagagaatatcctcatgaagagttacagcagatgtgaaattaaggttattgatcttggaagtagttgcttcttgacagacaacttaagcttatatgtccagtcacgttcttacagagctcctgaagtcattctaggtcttccatatgatcagaagattgacatttggtctctcggatgcatcttggctgaactgtacactggtgaagtgctctttccaaatgaatcagtacaaataattcttgctcggatgatagggacaattggtccaattgacatggaaatgcttgcactgggacaagatacccagaagtactttacagaagactacgacctgttccacaagaatgaggagacggatcagttggagtacttgatcccagagaagatttccttgcggcgtcgcttgcagtgccccgacaccaaatttgttaaatttctttcctacctgttacaaatcaaccccagaaagagaccaacagccagtgaagcattgcagcatccgtggctctcatatgcctatcagtga
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| Protein seq | MSALGAEGAAMGFLPAAEHGFARSAAPSPLREEEEVLDDDPKLPPLRMPTSFAAFPGSSSGSDSDSFLSMSSTPSGLMNPYGVWSPRAPPSEASSSEMEFGTAREYDTTDLFFGENWLYDDHLFHTNSDGDEGNGEDKFIVGADSTAQWSETRELDDCGGRHQVHTKSKADAEACAEVYICSSAPCSCCYGGRKNDDGLTRDSCSAVYGRYLIMDDQTEVLDECGADAFLFTRDGDAMLKSEQPIDSKGGDIELLDMSTVEKELQMLSPYLAEADALEKAELEHDFSGNGELDINIVTNEKTADDKELLKNSYSIHSLPEIGDPLDVYEMEDFGRTDTSVQNSTANKITEDARTDIDLALSRFHEEYEVFELRIFHRKNRTGFEENKEFPIVMNSVVGGRYRITEYLGSAAFSKVVRAQDFWTGMDVCLKIIKNDKDFFDQSLDEIKLLKFVNKYDPDDEHHILRLYDFFYYQEHLFIVTELLRANLYEFQKYNQEFGDEVYFSLRRIQAIARQCLEALVYLHHLNIVHCDLKPENILMKSYSRCEIKVIDLGSSCFLTDNLSLYVQSRSYRAPEVILGLPYDQKIDIWSLGCILAELYTGEVLFPNESVQIILARMIGTIGPIDMEMLALGQDTQKYFTEDYDLFHKNEETDQLEYLIPEKISLRRRLQCPDTKFVKFLSYLLQINPRKRPTASEALQHPWLSYAYQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 11.670213 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0466900 | RBH | 0.0 | 0.000000 | 5.028913 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39080 | RBH | 0.0 | 0.000000 | 1.066321 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0466900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020240 | RBH | 0.0 | 2.614784 | 12.540316 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020180 | RBH | 0.055902 | 1.425953 | 3.901741 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020060 | RBH | 0.154153 | 11.709060 | 13.876703 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020070 | RBH | 0.0 | 0.917796 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020200 | RBH | 0.657194 | 19.255745 | 14.989157 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0355700 | RBH | 3.5858245 | 4.5005015 | 12.1796725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019800 | RBH | 0.0 | 1.351746 | 0.577443 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0365800 | RBH | 4.303519 | 2.198252 | 15.4189755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020030 | RBH | 0.0 | 0.190947 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020030 | RBH | 0.000000 | 10.820449 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0038270 | RBH | 0.0 | 6.738327 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020170 | RBH | 0.146843 | 1.108987 | 1.759983 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020180 | RBH | 0.000000 | 11.343672 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019660 | RBH | 0.0 | 3.150468 | 7.693552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020070 | RBH | 0.209915 | 16.564316 | 7.665516 |
