Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0011540 | OGI:05037930 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:14874384-14877664 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agttgtaacaatttttcatccaagttatatataacagttgtagcacagagttAcacacaagtacatatgagctgctgagtgagagttccattgaagtttgaccaaTtttatAaaaaaaattagcaatatctacatcagcaaattcagatttcgtaagggtactttagagtctccaaatgtttcagttaaactttaaccatagtctaccagttcctagacctcaacattgcattgcagacatgctatgctactggaagaaaagaatttcagatacggaagagcgcaatcactaccaaagtgccaaaatgacgttatagcacattaactccagcagggcatttgctAaaaaaaaaaaagaaaaaaagaagtcaacaaggctagcaccgttctcccatgtgcagcaaatccttctttccttacaggtcagcgagttaagagaagggggcacaaggacactattgcatttacataatcagacatcaaggatggactgataccctgtacttcaatccgtcagttttgttacctgaaatggactcctgagatcttgcaCcgctttcatcacttTGtttctctttcttgctgactcactattattgtcaaacgcagcaggcctgatttttgttggatcttttagacagctttctgaaagcaccttctcagctatcgtattactctcacccatggtgatccctttcccattcttatcacaaatgttGggccgaggaaggtgttgatcttgtcgggtcaagttaatagcggcaagcttgtcagtcagttcttcaattgaacggagggctagattgtatccttcctgtgttctacatgcctcacttgccatgcacactgatttcttgcaaattgttgaatacctcattttcctagtggacgcttcagccatgttcaaaggtacatgacttcgtgtagcagcactgtctgatcccttcagagtccacctacggaacaagtatttatctggtatcagattgacattcctatgtgtcatcacctttaggatatgctcacagagtaatccttccctctcatactgcttgcaaacacatgtgaaggtctcatcctccaatttgcaatgaacaacatatcttctgttctggctttggtcaccaaacacaTtttggaccaaataggaataaggggttgcctcgcatactacattatacatagtagtgttcttgaggtgctcctgaaacctctcaaatattgcacgagtgtagaattttgatgcctgctcctccattggaaatttggaccacaaatttgcatctgttttgacagtaagaaagagctgtttatcatccctgtccagacaagattgaacgagcttctcatattgcacgatgaagttctggatgatgtccccagggtggacaaaatccttgaacaatgcttccatcacctcactctgttgggtaatgctcataaatgggaagaagcagtccatgaaatagcatggaacccatttttctctgatttcgtagaggtcctgcatatacttgttgcttgccaaattgtatcggtcaagcacagcagcccatcttctttcaaactcttcaacattaaacgactcgtcaatgcaatgtcttaggtcatcttcaaacccttccaaccgagacggcagcacaccaagcttgaacttagcatttctccatatgtaccatgagcaacgcctatgagatgtgtttggcaaaacatttgcgattgcgttctccattgcttcatcttgatcggtcatgatactctttggcactttcccatccatggccttaagaaaagtctgaaacAcccattcaaatgtctcctcaatttcagccttcagcaacacacaCccgaaaagcacagtctgcccatgattgttcataccaataatgggcgcaaatggaagacagtactttgttgtgatgtattttgtgttaaaaaacacgcaatcaccaaattctctatatgcttcccttgatactccatccacccaaaagacgctggtaattttgctttcgctgtccaattccatactgtAaaagaatgatgggtcatctgcttgcgattcttggaagtatttgattgtagctgccatatcagtgcaggtgccctcagcctctggcctcatggtcgccctcaggttgctcacatctttccttgcaagagggatgttttgcatgcttccatacaaatcacagagaacagacatgatcctctgcgtgggtatcttgtttgtgcgcagaaactctaagagatcatgatcttcatcttttatgaggcgatgaggctttaaggacataagtgcagaagggttcaaaggtggatggttgtgatccagatctactatggtgaccacccacttctcatccctcttcacaaccaccattcttgccttacaacctgtcttcagaactctactggacctccttgacctgctgccagcactagcaccagattccctcgagctccgctcggagtggcaagcgaactcataccgattgtattgctttgtgatctggcttcttctacagcttgaaatctttgttatgaaaccccatttcctcgcgtagtcatcataatagttctttgcctcgtccttgtcacgaaactccatgccaacatatggtttgtcgggcttcgaattgATatctccaatctcctcatccCGcacaccctccacaccttcaccaatctcttcatcctgcacaacctctgcaccttcaccttcaccttcttggtgttcagaagtagcagcaaacacctggattaaggcgtccttgagatgattctcttggtcagtggtaatctcagctgacgccctgtcatcattgtcttccatgtgaccgaaaaaggcctgcaccacagcagcaaccggaccaggccctgtcaggcatttgatcgaacacgtagcatacacccaccgtggacgccaccaatcaagccaagggaaacttacctgatgctcagcgagacttcagatcgcccggtcgcacccgcacggatcgaatagagcgtgcgagcccgacgaagagccgcgccaggtctgggtcgcccggaggcgaggaggtcaaGggctccggcgggcgcgtagccgtcctgtagatgtcccgcggagagcgcttgatggcggcggcgaggaaaggagcgcggtggcgtacggcggcgcctgccaccgacgccgaggcagccgcggcggcGgaggcggaggacgagccccttagtgttccgttggtgggggaatttgcggggttgatggaggatgacgtcagcaggatctgggccat
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| CDS seq | atggcccagatcctgctgacgtcatcctccatcaaccccgcaaattcccccaccaacggaacactaaggggctcgtcctccgcctcCgccgccgcggctgcctcggcgtcggtggcaggcgccgccgtacgccaccgcgctcctttcctcgccgccgccatcaagcgctctccgcgggacatctacaggacggctacgcgcccgccggagccCttgacctcctcgcctccgggcgacccagacctggcgcggctcttcgtcgggctcgcacgctctattcgatccgtgcgggcctttttcggtcacatggaagacaatgatgacagggcgtcagctgagattaccactgaccaagagaatcatctcaaggacgccttaatccaggtgtttgctgctacttctgaacaccaagaaggtgaaggtgaaggtgcagaggttgtgcaggatgaagagattggtgaaggtgtggagggtgtgCGggatgaggagattggagatATcaattcgaagcccgacaaaccatatgttggcatggagtttcgtgacaaggacgaggcaaagaactattatgatgactacgcgaggaaatggggtttcataacaaagatttcaagctgtagaagaagccagatcacaaagcaatacaatcggtatgagttcgcttgccactccgagcggagctcgagggaatctggtgctagtgctggcagcaggtcaaggaggtccagtagagttctgaagacaggttgtaaggcaagaatggtggttgtgaagagggatgagaagtgggtgtttgaaagaagatgggctgctgtgcttgaccgatacaatttggcaagcaacaagtatatgcaggacctctacgaaatcagagaaaaatgggttccatgctatttcatggactgcttcttcccatttatgagcattacccaacagagtgaggtgatggaagcattgttcaaggattttgtccaccctggggacatcatccagaacttcatcgtgcaatatgagaagctcgttcaatcttgtctggacagggatgataaacagctctttcttactgtcaaaacagatgcaaatttgtggtccaaatttccaatggaggagcaggcatcaaaattctacactcgtgcaatatttgagaggtttcaggagcacctcaagaacactactatgtataatgtagtatgcgaggcaaccccttattcctatttggtccaaaAtgtgtttggtgaccaaagccagaacagaagatatgttgttcattgcaaattggaggatgagaccttcacatgtgtttgcaagcagtatgagagggaaggattactctgtgagcatatcctaaaggtgatgacacataggaatgtcaatctgataccagataaatacttgttccgtaggtggactctgaagggatcagacagtgctgctacacgaagtcatgtacctttgaacatggctgaagcgtccactaggaaaatgaggtattcaacaatttgcaagaaatcagtgtgcatggcaagtgaggcatgtagaacacaggaaggatacaatctagccctccgttcaattgaagaactgactgacaagcttgccgctattaacttgacccgacaagatcaacaccttcctcggccCaacatttgtgataagaatgggaaagggatcaccatgggtgagagtaatacgatagctgagaaggtgctttcagaaagctgtctaaaagatccaacaaaaatcaggcctgctgcgtttgacaataatagtgagtcagcaagaaagagaaaCAaagtgatgaaagcgGtgcaagatctcaggagtccatttcaggtaacaaaactgacggattga
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| Protein seq | MAQILLTSSSINPANSPTNGTLRGSSSASAAAAASASVAGAAVRHRAPFLAAAIKRSPRDIYRTATRPPEPLTSSPPGDPDLARLFVGLARSIRSVRAFFGHMEDNDDRASAEITTDQENHLKDALIQVFAATSEHQEGEGEGAEVVQDEEIGEGVEGVRDEEIGDINSKPDKPYVGMEFRDKDEAKNYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASAGSRSRRSSRVLKTGCKARMVVVKRDEKWVFERRWAAVLDRYNLASNKYMQDLYEIREKWVPCYFMDCFFPFMSITQQSEVMEALFKDFVHPGDIIQNFIVQYEKLVQSCLDRDDKQLFLTVKTDANLWSKFPMEEQASKFYTRAIFERFQEHLKNTTMYNVVCEATPYSYLVQNVFGDQSQNRRYVVHCKLEDETFTCVCKQYEREGLLCEHILKVMTHRNVNLIPDKYLFRRWTLKGSDSAATRSHVPLNMAEASTRKMRYSTICKKSVCMASEACRTQEGYNLALRSIEELTDKLAAINLTRQDQHLPRPNICDKNGKGITMGESNTIAEKVLSESCLKDPTKIRPAAFDNNSESARKRNKVMKAVQDLRSPFQVTKLTD |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0011540 | OsGoSa_05g0011540.01 | Chr05 | 14874384 | 14877664 | - | NAM | ||
| CDS seq | atggcccagatcctgctgacgtcatcctccatcaaccccgcaaattcccccaccaacggaacactaaggggctcgtcctccgcctcCgccgccgcggctgcctcggcgtcggtggcaggcgccgccgtacgccaccgcgctcctttcctcgccgccgccatcaagcgctctccgcgggacatctacaggacggctacgcgcccgccggagccCttgacctcctcgcctccgggcgacccagacctggcgcggctcttcgtcgggctcgcacgctctattcgatccgtgcgggcctttttcggtcacatggaagacaatgatgacagggcgtcagctgagattaccactgaccaagagaatcatctcaaggacgccttaatccaggtgtttgctgctacttctgaacaccaagaaggtgaaggtgaaggtgcagaggttgtgcaggatgaagagattggtgaaggtgtggagggtgtgCGggatgaggagattggagatATcaattcgaagcccgacaaaccatatgttggcatggagtttcgtgacaaggacgaggcaaagaactattatgatgactacgcgaggaaatggggtttcataacaaagatttcaagctgtagaagaagccagatcacaaagcaatacaatcggtatgagttcgcttgccactccgagcggagctcgagggaatctggtgctagtgctggcagcaggtcaaggaggtccagtagagttctgaagacaggttgtaaggcaagaatggtggttgtgaagagggatgagaagtgggtgtttgaaagaagatgggctgctgtgcttgaccgatacaatttggcaagcaacaagtatatgcaggacctctacgaaatcagagaaaaatgggttccatgctatttcatggactgcttcttcccatttatgagcattacccaacagagtgaggtgatggaagcattgttcaaggattttgtccaccctggggacatcatccagaacttcatcgtgcaatatgagaagctcgttcaatcttgtctggacagggatgataaacagctctttcttactgtcaaaacagatgcaaatttgtggtccaaatttccaatggaggagcaggcatcaaaattctacactcgtgcaatatttgagaggtttcaggagcacctcaagaacactactatgtataatgtagtatgcgaggcaaccccttattcctatttggtccaaaAtgtgtttggtgaccaaagccagaacagaagatatgttgttcattgcaaattggaggatgagaccttcacatgtgtttgcaagcagtatgagagggaaggattactctgtgagcatatcctaaaggtgatgacacataggaatgtcaatctgataccagataaatacttgttccgtaggtggactctgaagggatcagacagtgctgctacacgaagtcatgtacctttgaacatggctgaagcgtccactaggaaaatgaggtattcaacaatttgcaagaaatcagtgtgcatggcaagtgaggcatgtagaacacaggaaggatacaatctagccctccgttcaattgaagaactgactgacaagcttgccgctattaacttgacccgacaagatcaacaccttcctcggccCaacatttgtgataagaatgggaaagggatcaccatgggtgagagtaatacgatagctgagaaggtgctttcagaaagctgtctaaaagatccaacaaaaatcaggcctgctgcgtttgacaataatagtgagtcagcaagaaagagaaaCAaagtgatgaaagcgGtgcaagatctcaggagtccatttcaggtaacaaaactgacggattga
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| Protein seq | MAQILLTSSSINPANSPTNGTLRGSSSASAAAAASASVAGAAVRHRAPFLAAAIKRSPRDIYRTATRPPEPLTSSPPGDPDLARLFVGLARSIRSVRAFFGHMEDNDDRASAEITTDQENHLKDALIQVFAATSEHQEGEGEGAEVVQDEEIGEGVEGVRDEEIGDINSKPDKPYVGMEFRDKDEAKNYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASAGSRSRRSSRVLKTGCKARMVVVKRDEKWVFERRWAAVLDRYNLASNKYMQDLYEIREKWVPCYFMDCFFPFMSITQQSEVMEALFKDFVHPGDIIQNFIVQYEKLVQSCLDRDDKQLFLTVKTDANLWSKFPMEEQASKFYTRAIFERFQEHLKNTTMYNVVCEATPYSYLVQNVFGDQSQNRRYVVHCKLEDETFTCVCKQYEREGLLCEHILKVMTHRNVNLIPDKYLFRRWTLKGSDSAATRSHVPLNMAEASTRKMRYSTICKKSVCMASEACRTQEGYNLALRSIEELTDKLAAINLTRQDQHLPRPNICDKNGKGITMGESNTIAEKVLSESCLKDPTKIRPAAFDNNSESARKRNKVMKAVQDLRSPFQVTKLTD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.993923 | 12.929697 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0317300 | RBH | 1.147974 | 0.618540 | 1.922175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g25320 | RBH | 0.823292 | 0.699801 | 0.561401 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0317300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0011530 | RBH | 0.227826 | 0.000000 | 2.959185 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0011550 | RBH | 0.242364 | 2.420825 | 1.058548 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0011490 | RBH | 0.869713 | 0.769046 | 4.470966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0011560 | RBH | 0.170994 | 0.201555 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0011550 | RBH | 1.734978 | 9.374184 | 5.530582 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0216100 | RBH | 4.9967395 | 9.993267 | 14.6959235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0011300 | RBH | 0.164062 | 0.269499 | 0.474756 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0225900 | RBH | 4.609126 | 7.0938795 | 14.9795545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0011490 | RBH | 0.186407 | 0.142205 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0011410 | RBH | 0.323057 | 3.841930 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0011560 | RBH | 0.289497 | 0.505322 | 0.659525 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0011560 | RBH | 0.280136 | 2.458421 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G011260 | RBH | 0.148639 | 1.722736 | 1.009296 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0011550 | RBH | 1.193940 | 0.0 | 3.217566 |
