Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0011100 | OGI:05035520 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:13776426-13778650 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccaatagccaccacatgagcatgaaccattcttgaaatgatgaaaacgactggggtcgcgcactacgatctcatggtccacaatcttggaaatgtaggtgaatgcgctatggcaatcaccacatacacgcaggttctttgtgatccttattgggcaaccagggaaagttgtgaggagaccatatgcaagagcaagtttctcactgtgctcaacaagaagatTAtttttctcttcctcatcaacatcatgtaatgcgaagtttgtctcaggaacatatcccatagctttgatgcgatcaattagactctccagaagagcataaatttgtggggatagtgggtgtgatcgatctccgacaaagaaagatgctgtgcccttttgaccctggacccagctgcatcctggcctcttcttaattcctgatttcttcatcaagtgcctgatcctcgctacatccttccaccgccctgcagtggcatatatgttggagataagcgtgtaagatccatcattttcagcattcatctcgaccagtttgttcagagcatgttcagcaagttcaatatttgaatgtactctacaggcactcagtaatgcaacccaaactactgcggtgggctccattggcatatccttaactgttttccatgccttatctaatcgcccaaagCgggccagcaagtcaatagcacaggcatagtgctctgcccgaggtgtcaaaccataatctgcactcatgctgtcaaagtacgatagaccttgatcaaccattccacaatgactacaagcataaagaacaaccacgaaggttatatcgtcaggaacaaagcctgctttccgcatcttgtcaaatatgtccagggcctcactaccacgaccgtgcattccataccctgtcatcattgatgtccaagaaatagcactcttttgagacatgctatcgaatacatgcctagctgtatcaacatccccacactttgagtacatattaatgaggcagttcgccacaaagtatgcagatgagtcatatcggtgatgacgaagcacataagcatgaatctgcttacctatacgtatggctgccaaatgtgcacaggccatcaaaatgcacgaaattgtataagcatttggggctactccatatggttccgaaatcatctccacgaaaagcttgagggcatcatttgagtccccatattgtgcatgCcccccgatcatgacagtccaggtgacaacattgcgttcctccagaggtatatcatcaaatatggagcgtgcagctttgaagcttctgcactttgagtacatatctatagcgcgttgtacaccataagatctcatcctcaccaccaaaatcattatccaaggttagaagacagtctttagggagtaggcatgaatttccataccctgagaaaatgctcccaaagaagcgcaggcagacaaacagagatgattgtgacacaatttggcaaggaccagaaaatatcattgacggaatacattgagtgcttcatggctccatcctctgagaatagcctgcaattacagcagtccatgttaccatatctaatgggatattttccttgcgcatgttcttgaaaagctcaaaggctgccttaaagttgccactttgggagtacccagccaccattgcgttccaagaaaccacatctttgaattcatcatgttgaaaaccttaccgcattttccatcaaaccacacttagcgtaagcatcaatcagggcattaccaacaaaaacatctagaaatgtgccattacgaatagcattaccatggactctttagttgaggtactgcctttagagaaccacatgcaggagtatgttgacaatgctaatgatgtctgacctttcatttgtaggcttctcatggacaatcaatgtcatctttgaaaacagatccaatgcagtccaagcattactacTtttaacatgggctgaaacaatagagttccatgagataacatcatcaatacccctctgagttatttcatcaaagatcatgctggcttcctccaaagaaccacaacgggaatacattgccaccaacgcattacatatgaagacattggactcaaagccattgcagcatatcaatccatggaatgcactaccacaacggtatgaaggtagctctccacatgcTtttaatacatgtggtagagtaaaatggtccagcctagttccagcacgcagcat
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| CDS seq | atgctgcgtgctggaactaggctggaccattttactctaccacatgtattaaaAgcatgtggagagctaccttcataccgttgtggtagtgcattccatggattgatatgctgcaatggctttgagtccaatgtcttcatatgtaatgcgttggtggcaatgtattcccgttgtggttctttggaggaagccagcatgatctttgatgaaataactcagaggggtattgatgatgttatctcatggaactctattgtttcagcccatgttaaaAgtagtaatgcttggactgcattggatctgttttcaaagatgacattgattgtccatgagaagcctacaaatgaaagaagcttcaaagctgcacgctccatatttgatgatatacctctggaggaacgcaatgttgtcacctggactgtcatgatcgggggGcatgcacaatatggggactcaaatgatgccctcaagcttttcgtggagatgatttcggaaccatatggagtagccccaaatgcttatacaatttcgtgcattttgatggcctgtgcacatttggcagccatacgtataggtaagcagattcatgcttatgtgcttcgtcatcaccgatatgactcatctgcatactttgtggcgaactgcctcattaatatgtactcaaagtgtggggatgttgatacagctaggcatgtattcgatagcatgtctcaaaagagtgctatttcttggacatcaatgatgacagggtatggaatgcacggtcgtggtagtgaggccctggacatatttgacaagatgcggaaagcaggctttgttcctgacgatataaccttcgtggttgttctttatgcttgtagtcattgtggaatggttgatcaaggtctatcgtactttgacagcatgagtgcagattatggtttgacacctcgggcagagcactatgcctgtgctattgacttgctggcccGctttgggcgattagataaggcatggaaaacagttaaggatatgccaatggagcccaccgcagtagtttgggttgcattactgagtgcctgtagagtacattcaaatattgaacttgctgaacatgctctgaacaaactggtcgagatgaatgctgaaaatgatggatcttacacgcttatctccaacatatatgccactgcagggcggtggaaggatgtagcgaggatcaggcacttgatgaagaaatcaggaattaagaagaggccaggatgcagctggattgtggaccatgagatcgtagtgcgcgaccccagtcgttttcatcatttcaagaatggttcatgctcatgtggtggctattggtga
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| Protein seq | MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFVVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNIELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWIVDHEIVVRDPSRFHHFKNGSCSCGGYW |
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| Function | Pentatricopeptide repeat-containing protein At5g16860 [UniProtKB/Swiss-Prot:Q9LFL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0011100 | OsGoSa_05g0011100.01 | Chr05 | 13776426 | 13778650 | - | NAM | ||
| CDS seq | atgctgcgtgctggaactaggctggaccattttactctaccacatgtattaaaAgcatgtggagagctaccttcataccgttgtggtagtgcattccatggattgatatgctgcaatggctttgagtccaatgtcttcatatgtaatgcgttggtggcaatgtattcccgttgtggttctttggaggaagccagcatgatctttgatgaaataactcagaggggtattgatgatgttatctcatggaactctattgtttcagcccatgttaaaAgtagtaatgcttggactgcattggatctgttttcaaagatgacattgattgtccatgagaagcctacaaatgaaagaagcttcaaagctgcacgctccatatttgatgatatacctctggaggaacgcaatgttgtcacctggactgtcatgatcgggggGcatgcacaatatggggactcaaatgatgccctcaagcttttcgtggagatgatttcggaaccatatggagtagccccaaatgcttatacaatttcgtgcattttgatggcctgtgcacatttggcagccatacgtataggtaagcagattcatgcttatgtgcttcgtcatcaccgatatgactcatctgcatactttgtggcgaactgcctcattaatatgtactcaaagtgtggggatgttgatacagctaggcatgtattcgatagcatgtctcaaaagagtgctatttcttggacatcaatgatgacagggtatggaatgcacggtcgtggtagtgaggccctggacatatttgacaagatgcggaaagcaggctttgttcctgacgatataaccttcgtggttgttctttatgcttgtagtcattgtggaatggttgatcaaggtctatcgtactttgacagcatgagtgcagattatggtttgacacctcgggcagagcactatgcctgtgctattgacttgctggcccGctttgggcgattagataaggcatggaaaacagttaaggatatgccaatggagcccaccgcagtagtttgggttgcattactgagtgcctgtagagtacattcaaatattgaacttgctgaacatgctctgaacaaactggtcgagatgaatgctgaaaatgatggatcttacacgcttatctccaacatatatgccactgcagggcggtggaaggatgtagcgaggatcaggcacttgatgaagaaatcaggaattaagaagaggccaggatgcagctggattgtggaccatgagatcgtagtgcgcgaccccagtcgttttcatcatttcaagaatggttcatgctcatgtggtggctattggtga
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| Protein seq | MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFVVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNIELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWIVDHEIVVRDPSRFHHFKNGSCSCGGYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0305300 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g23960 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0305300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0011070 | RBH | 0.000000 | 1.616458 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0011090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0011030 | RBH | 0.210784 | 0.0 | 0.331380 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0011090 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0011060 | RBH | 0.436128 | 0.000000 | 2.481136 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0200800 | RBH | 0.1254215 | 0.6519585 | 0.4167085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0010850 | RBH | 0.000000 | 0.000000 | 0.326480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0211300 | RBH | 0.11621 | 0.45018 | 0.425345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0011010 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0010950 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004570 | RBH | 4.387198 | 15.636606 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0011100 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0011100 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G010790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0011120 | RBH | 0.746538 | 3.551712 | 0.524713 |
