Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0003270 | OGI:05007620 | 14/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:2687946-2690889 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaacgtccagtgtatggcgattaagctggcacacttaataacacattcaataaaattcttttctattgcagcgcccattcagctattaataaattaacttagcaaaatcatgacagttgaggataaaaaaaaaacatactggaacttcctccacatctgcaagcacttgaggatgatgttagaaggaataaaagaccctcttgtactgcggatagacatgcccacaacatctccccttaagtcaatgactggtcccccgttgtaatactacaatatttacattgacaatatttaaattattaaccacaaacaaaaaaaatgaaactataataggaaaaaatgagtatcataatctatttttacctcaggaggtgcactgaaaccatcaatgtatacatagtgacggcgttcattcatatgtggattcaaatactgaaccctaccatagcttgttctcagatacgaattttcatctcttcccaggataaagacctcttcagcccatttcactccttcattaaaggagggtaaatggatggatctgtccactacaatcttgtagaaagcaaggttgtaatgctcctgacaatatagaaaatgaccctccacagtggtaccatccacaaagcgaactacaacctgaaatagtagttaattattgcattatatttgtgagagcatagaaactaaaacggaccagattgaaatctatactccttatataagggagtggtggtggtggttccaccacccccgctaacaaatcccaactttttttaagaaagagaaatgacatgtgaggttagagggcccacatgccaaacaattccaccaacgaactacttttttgtgggaaggaaaaaacagtgcggagctaaaaaggtccatatgcaagtaacaaatatgaacaacaattaagagatggtaataacatgttaacgataaatttctttaattaaaatcatgttgcaaggcacaggaaatatgctagttattatatttaagagaaaagcttacattactgcctgtattttctagagaagtctggcatatcctatccaatatgcaactaggaaccttgatatgatatagtacctcccagttccaagctttagttaaataatggcattataaccaagcccatgtattccatttatattctttcatcccttataggagtcatccatagacagagtactagttaatgttgggaaccattgatgcgtgtggatgtgcagacaaggatctatctagtttattttgtccccaccccccttgtgagagatacatgttgcatcatcttcaatagcatgttccttcttcacttttggcaatatccacgtcttacacgactaatgagagttattcaaactgctttgaattaagactaactaaaacgaaattatgtcaaaagtacctaacagatgctctaaatactgcaaaaaagttagcccacaatttagtactgatatagggccttgtatatggctaaaagtaacacatgctagatttaacttgaaaacatatttttacaaaatcattatggcctcatataagtgaaagtagaagaatcaaatgtgccaatttcctatgtaaactcaccttagcattagaagcatactggtttgcacttttccaatcatctaaagaaggggactgtttgcaaataagaagggctgatgtcaacatagtgcctgttttgctcttctcatcccaatcgatcatgaaaccagaactcttagataatgacttgccatctaaaaataaatttacaaattactaatcaaatagcgagacttgtaaatcttaatgcacatgaataaaataggatgatgtttacctatagtagacgaaagacccacaacaaactttgcagcatgaagaacagtcttagtcgatgattcacgaatgtggaggaggttccgatcagtaaggcatgtgtcaggtacgcgtgggagtaaagtgggcagtttcatttgacaatctagaaagggaagagcaagaattttcacctgttagttctaataagaaatgcatgattgccaactccttttttcttcctttcttttctttttattgcaaaatctagtacggataaatagcccttcttttctttccccaaaatcttgcaggtaatttgttttcatttctttttaccagaatgaaattaaaggagtataaacctctttttgcctggtatttggccgggtaaattgttttcatttatttttaccagaatgaaattaaagagaatgaaattaaaggagtataaacctctttttgcctggtatttggcttcccacggatcaagtgccctgaagtcttcacctccgataggcttatagatctctctacccatggcattgtgtccaattacaacacggggtatgtatggcttacggagaggagaactgcagcaagaagaggcctcgtcctccactggaatcccctcctccactcctgacgctgaaggcagcgccagtgcgccaccttctcctcctcctgctgaacccccaaatccatcgtcttcgccgccctttcccccttgttgctcctccgctactgacgcagacgctgaaggcggcgccaccttcaccccctcctcctcctcatgcacccccaaatccatcttcttcgctgccctttcaccctcgctgctctgatcggccagagttgctgaccttttagctgatcgcctctcggatcgctccgcgcgcgccgccgattgggatgcgagcgaggccaccaccccgctgccgccgtcccggttgacactgcggcgtcgccttgcgctcgaccgggtcttcacggaccccgaagcctcctccgctcccgctgcgccaggcgccatggcatgccggagggaagcctagggtttcttgcttgcgatcgccggagaaactcgcacttctactcgaggaatttttggagttggggatttc
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| CDS seq | atggcgcctggcgcagcgggagcggaggaggcttcggggtccgtgaagacccggtcgagcgcaaggcgacgccgcagtgtcaaccgggacggcggcagcggggtggtggcctcgctcgcatcccaatcggcggcgcgcgcggagcgatccgagaggcgatcagctaaaaggtcagcaactctggccgatcagagcagcgagggtgaaagggcagcgaagaagatggatttgggggtgcatgaggaggaggagggggtgaaggtggcgccgccttcagcgtctgcgtcagtagcggaggagcaacaagggggaaagggcggcgaagacgatggatttgggggttcagcaggaggaggagaaggtggcgcactggcgctgccttcagcgtcaggagtggaggaggggattccagtggaggacgaggcctcttcttgctgcagttctcctctccgtaagccatacataccccgtgttgtaattggacacaatgccatgggtagagagatctataagcctatcggaggtgaagacttcagggcacttgatccgtgggaagccaaataccaggcaaaaagagattgtcaaatgaaactgcccactttactcccacgcgtacctgacacatgccttactgatcggaacctcctccacattcgtgaatcatcgactaagactgttcttcatgctgcaaagtttgttgtgggtctttcgtctactatagatggcaagtcattatctaagagttctggtttcatgatcgattgggatgagaagagcaaaacaggcactatgttgacatcagcccttcttatttgcaaacagtccccttctttagatgattggaaaagtgcaaaccagtatgcttctaatgctaaggttgtagttcgctttgtggatggtaccactgtggagggtcattttctatattgtcaggagcattacaaccttgctttctacaagattgtagtggacagatccatccatttaccctcctttaatgaaggagtgaaatgggctgaagaggtctttatcctgggaagagatgaaaattcgtatctgagaacaagctatggtagggttcagtatttgaatccacatatgaatgaacgccgtcactatgtatacattgatggtttcagtgcacctcctgagtattacaacgggggaccagtcattgacttaaggggagatgttgtgggcatgtctatccgcagtacaagagggtcttttattccttctaacatcatcctcaagtgcttgcagatgtggaggaagttccagtatgttttttttttatcctcaactgtcatgattttgctaagttaa
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| Protein seq | MAPGAAGAEEASGSVKTRSSARRRRSVNRDGGSGVVASLASQSAARAERSERRSAKRSATLADQSSEGERAAKKMDLGVHEEEEGVKVAPPSASASVAEEQQGGKGGEDDGFGGSAGGGEGGALALPSASGVEEGIPVEDEASSCCSSPLRKPYIPRVVIGHNAMGREIYKPIGGEDFRALDPWEAKYQAKRDCQMKLPTLLPRVPDTCLTDRNLLHIRESSTKTVLHAAKFVVGLSSTIDGKSLSKSSGFMIDWDEKSKTGTMLTSALLICKQSPSLDDWKSANQYASNAKVVVRFVDGTTVEGHFLYCQEHYNLAFYKIVVDRSIHLPSFNEGVKWAEEVFILGRDENSYLRTSYGRVQYLNPHMNERRHYVYIDGFSAPPEYYNGGPVIDLRGDVVGMSIRSTRGSFIPSNIILKCLQMWRKFQYVFFLSSTVMILLS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0003270 | OsGoSa_05g0003270.01 | Chr05 | 2687946 | 2690889 | - | NAM | ||
| CDS seq | atggcgcctggcgcagcgggagcggaggaggcttcggggtccgtgaagacccggtcgagcgcaaggcgacgccgcagtgtcaaccgggacggcggcagcggggtggtggcctcgctcgcatcccaatcggcggcgcgcgcggagcgatccgagaggcgatcagctaaaaggtcagcaactctggccgatcagagcagcgagggtgaaagggcagcgaagaagatggatttgggggtgcatgaggaggaggagggggtgaaggtggcgccgccttcagcgtctgcgtcagtagcggaggagcaacaagggggaaagggcggcgaagacgatggatttgggggttcagcaggaggaggagaaggtggcgcactggcgctgccttcagcgtcaggagtggaggaggggattccagtggaggacgaggcctcttcttgctgcagttctcctctccgtaagccatacataccccgtgttgtaattggacacaatgccatgggtagagagatctataagcctatcggaggtgaagacttcagggcacttgatccgtgggaagccaaataccaggcaaaaagagattgtcaaatgaaactgcccactttactcccacgcgtacctgacacatgccttactgatcggaacctcctccacattcgtgaatcatcgactaagactgttcttcatgctgcaaagtttgttgtgggtctttcgtctactatagatggcaagtcattatctaagagttctggtttcatgatcgattgggatgagaagagcaaaacaggcactatgttgacatcagcccttcttatttgcaaacagtccccttctttagatgattggaaaagtgcaaaccagtatgcttctaatgctaaggttgtagttcgctttgtggatggtaccactgtggagggtcattttctatattgtcaggagcattacaaccttgctttctacaagattgtagtggacagatccatccatttaccctcctttaatgaaggagtgaaatgggctgaagaggtctttatcctgggaagagatgaaaattcgtatctgagaacaagctatggtagggttcagtatttgaatccacatatgaatgaacgccgtcactatgtatacattgatggtttcagtgcacctcctgagtattacaacgggggaccagtcattgacttaaggggagatgttgtgggcatgtctatccgcagtacaagagggtcttttattccttctaacatcatcctcaagtgcttgcagatgtggaggaagttccagtatgttttttttttatcctcaactgtcatgattttgctaagttaa
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| Protein seq | MAPGAAGAEEASGSVKTRSSARRRRSVNRDGGSGVVASLASQSAARAERSERRSAKRSATLADQSSEGERAAKKMDLGVHEEEEGVKVAPPSASASVAEEQQGGKGGEDDGFGGSAGGGEGGALALPSASGVEEGIPVEDEASSCCSSPLRKPYIPRVVIGHNAMGREIYKPIGGEDFRALDPWEAKYQAKRDCQMKLPTLLPRVPDTCLTDRNLLHIRESSTKTVLHAAKFVVGLSSTIDGKSLSKSSGFMIDWDEKSKTGTMLTSALLICKQSPSLDDWKSANQYASNAKVVVRFVDGTTVEGHFLYCQEHYNLAFYKIVVDRSIHLPSFNEGVKWAEEVFILGRDENSYLRTSYGRVQYLNPHMNERRHYVYIDGFSAPPEYYNGGPVIDLRGDVVGMSIRSTRGSFIPSNIILKCLQMWRKFQYVFFLSSTVMILLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0146100 | RBH | 0.0 | 0.0 | 7.349067 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g05354 | RBH | 0.0 | 0.0 | 1.840260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0146100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003210 | RBH | 0.091225 | 1.218554 | 6.498712 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0003280 | RBH | 0.0 | 0.0 | 3.902924 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0003230 | RBH | 0.173956 | 0.000000 | 22.285397 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0003290 | RBH | 0.029359 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0003350 | RBH | 0.0 | 0.0 | 3.257333 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0038600 | RBH | 0.0835315 | 0.38498 | 7.045883 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003130 | RBH | 0.0 | 0.0 | 0.448042 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0040000 | SBH | 4.064163 | 7.763494 | 8.5440555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0003240 | RBH | 0.000000 | 0.080363 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0003160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0003300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0003300 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0003340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003170 | RBH | 0.069129 | 0.0 | 7.196186 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0003370 | RBH | 0.0 | 0.0 | 1.038247 |
