Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_05g0000040 | OGI:05000140 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr05:46562-51615 | ||||||||
| Gene Symbol | RLCK175, OsRLCK175 | ||||||||||
| DNA seq | GTCGGCGGCGCTGCAGCACCAGGCGTTCCGGCGGGGCGGCGAGGTGGTGGACCTGGCCATCCTGAGCGGCACCGCCTACACGTGCGTGGTGTGGGCGGTGAACGCGCAGATGACGGTGACGGCCAACTACTTCACCCTGGTGCAGCACGCCTGCATCTGGGGCAGCGTGGCGCTGTGGTACGTGTTCCTCCTCGCCTACGGCGCCATCACCCCGGCCTTCTCCACCAACTACTTCATGCTCTTCACCGACGGCCTGGCCGCCGCGCCCTCCTACTGGGTGGTCACCCTGCTCGTCCCCGCCGCCGCGCTCCTCCCTTACTTCACCTACTCCGCCGCCAAGACGCGCTTCTTCCCCGACTACCACAACAAGATCCAGTGGCTGCAGCACCGTGGCTCCAACGCCGACGACCCCGAGTTCGGCCACGCCCTGCGCCAGTTCTCCGTCAGGTCCACCGGGGTTGGCGTCTCCGCCCGCCGCGACGCCAGGGACCTCCACCTCCCTCCTCCTTCCCAATCACATTCACATTCACAAACCACATCTACCTAGTAATAGTATAGTCTAGCAAGCAGCTACTGTTCACTAACAGCACCATTTTTTTTCCACATCCAAATCAATTTCCCTTTTTCGTGTACAAAATTTATACTAGCTGAAGCCTAGTACTAGCCTTGTAACTGTACATTAACCCTACTTGCTCATCTCATACGACAACATTGTACATTGGAGCGGACGCATACGTACGTACCATCCATTTTTATCTTGTTTTGTTCCTTCATCATCACACATTAATATTCATTCAGGAACAATAAAGATACTTCCATTCTTTTCTTGTTTTCATTTTGGTTCACCAATGGCTCTTTCTTTGTGATGTGATCACCTAAAAAGAACTCGTGTGATAGTCAAATTTGATGGCCTGGAAATCAGGAACACTTGTTTTTGGTCAGGCAAGACATTCGGCGTTAATTGTTACACTTACAGGCAGCATTATTCCATTCTAAAATGATGTAACTTGTTAGCCACCACCACGACGACGTTTCGTTTCTTGTGGGTGGTTCAGTTGAGACGCCACATGAGACCATAACGTCGTCGTCCTCCTCTTGGCGTCAACATCAAAAATTCAGAGAAAGAGAAAACATCTAGAAGCTTAAATGATCTCGTGTGTGCTTTTGTGCTTTGACCAACACCATAATTTTGTCAAACAAGAAGAATGAGTTCATGTGTACATACATGATCGATCTACACGTTACGGGAGCACTCAATTCGCCACCCTATTCTTCTGCGAATAACAATCAAACAATCAATTCAGTTCGCTTTGCTTAGCCCTAACATAGTAAGGATTACACTGGACACTCCATACCCAATTCAACCCGGATTAGTGAGTGAAGAAGAATAGACTAGTCAATACTGAGCAAAGAAAGCAACTACTGCACGCTACAGGATCCTGGAGCTTGAGGCTATGAGTAGAGTACCTCTACTGGCGACTGCTGCTCCAACCGTATTGGCTCATGTCGGAGCTGTCATCGTGGTTGCCCAGCACCATCCGCTGGAACATCCTAACCTCTGCTGTGTTCGCCACATTGAAAAGCTCGCTCTGCCCTGGCTGAACGCCATTTGTAAGATCAATATCGGCTAAGCTATCAAGAGCTCGCACCACCTGAAAGAAATCAAGATTTTAACTTGATAACTGCTTCTAGATAGACTGAAAACCACAACCGTAGTACCAATTGAAATGAAATGCACTATTCGTATGCGCAGATTGGAATGCAAAGCATTGTTCCCAGTTCATGTAAAAAAATGAAATGTTTCCAGACAAATTCCAAACGTAGCTTGTATATTATATGCACCTGGCTCATTCTGGGCCTCCTTGATGCGGAGTATCGAACACAGGCTGCTGCAGCTTCAATCATACGGAACATTTCAGCTTCATTGAAGTTCCTCTCAAGCCTGGGGTCGACCAACTCTTCCAAATTACCTGTCTCAATAGCTTGAGTAAGCAATGGTCTAGCCTGCAAACAATAGGGATTCAAGAAATGTCAAGAGTTTGCAAAGTTGAAGGACAACAAAATAACTATTTGAGTGATATGTAGCTCATTTAGCTGTTAGTGATGTCTTGTTATTGCATACAGTAGTTGAGAACCAGAGTCAGGTAGCGATTGTGCAGTTCAGGGTAGTAGCTACTAGCTTTTACAACATGACACAAGTACATACATATACAAAAAAAACTCCGATAAAAATCTTCTTCTCTGAATATATACATAGGATTTATTTTACAGTATTCCACATTTGTTTGAGCCGCTCATCAGCCAACGGGTACTCCAAATATCAAATAGCGCATTCAAACTAAATGTCCCTCAACTTCTAAAGTGACAACATTCCATCAAAATACTAGGAAAGAAGGGCCACGTGACAATAGAAACTTAAGCCAATCCCAGTGAACAAACAATATTCTAGGAGATCTCCAGTTAATAGTCAGATAAAAAATTCACCGATAAGGACATTATAGAGTATCAGAACTAAAAATATGCCACCAAGTAAACCATTTTAAGCAATAAGATTTCAGTCCAGAGCTATAACTCACCCACTCAACAAGGCTCTCATCACCCAATGGCCTTGATGCATCAACAGGTTTTCTACCAGTGATAAGCTCTAAGAGAACAACACCAAAAGAGAACACATCAGATCTCTCAGTCAATTTCCCACTTGATGCATATTCTGGAGCCATGTACCTGCAAGGAAAAACGAATTTTATTAATTATCTCTGTAAGATCAGGACAGATCTGCTTCTGAAAATTGCCAGTACTTCACTAACCCAAATGTCCCCATTACACGGGTAGTTACATGAGTTACAGCGTCCAAAGCCAACCTCGCAAGACCAAAATCAGCCACCTAGAATTCATGGACAGGATCAAATCAGCAAATTAAGTAGGCCATGAGATGTGGCCAGACTCATTTACATTAACTATGTAGTGTAGAGATGCACTTGGGATCATTTTGGGAATATAATTACATGTGCCTCAAAGTTATTATCCAACAAAATGTTTGAGGACTTGATGTCTCGGTGGATTATCCTTGGATGGCCTGAAAAATGGAGATATAAGTGGAGGGACAAGGTAGGTCGAAATAATGGAATAATGACCGTGAAGATAGTCAAAAATAGGAAGGAGCATTACAATCTTCATGTAGATACGCTATTCCACGAGCAGCACCTGCAGCAATTTTAACCCTAGCCGACCAATCTAGAACAGGCCTCCCGTGTCCTGTGATTACAGGTTGATTCAATACATGTTTCAGTTTCTACTTGCAGAAGAACGAAATGGCCATGTACAATGTAGCAAGAGGTTAAACCATACCGTGAAGATGATAATGAAGGGTGTTATTAGGCACAAAGTCGTAGACAAGTAACCTTTGGTTATTGGAAATGCAATATCCCACAAGAGATACCAGATGACGGTGATGCACACGGCTAATTATCTCGACTTCAGCCTGGAATTCACGTTCCCCTTGTCCACCACCATCTTTTAATTGCTTAACAGCCACTTGTTTTCCATCTGGCAAGTGGCCCTTGTATACAGACCCAAACCCTCCTTCCCCCAGCAGGTTGTGAGCTGAGAAAGCATCAGTAATCTGGTACAGTTCTTGGTATGTGAAGAAGCGGGAATTGCCCATGCTAATATCAGACATGCATGCTTTCAGTTTGGGACTTCCGGCGCTATAGTTTGTTTTGAAAGAAGGGTCCAACGATGATCCTACATTTGCGGAGGCACCTGAAGAAAAAGTGACAAAGATAGTAACGACTACATGCTGAAATTCGTCATGGTGAAAATGTTAGCATCACACAATAAGAGAGCTTCTATAGCGTTACTTTGTGGTACTGCGGTACCTCTATAAGGAAGGACAGTTGAAAATGTGTGAACAGTAAGGAAGTTTGTGCTCATTTTACATTGTAGAGTGAGGAATAGAAGTAGGTGTGAAAACTGAAAAAATGGCAGTAGTACAAGGGATGGGAGGAGTGCAGTACCTGATCCTGATGATGGGTGGTGAGAAGACAAGGGAGAAGTGGGTGACATGAATCCAGCACGGTAGCCATTATCCCTCCTACGCTGCTTCTTCTTTTTCTTGGTAGTGTACCATATAGCAGCTCCTAATAAGCTAAGCACAAGGATGGCGAGCACTGCACCGACAGCAATGGCAAGGTTGGGCGGTGAGGAGGAGGAGTTAGTGCGTCGAGGAGCAGCAGGGCTGGAGGATTTGTTGGAGCTGGGGTGCCTGGCCTTGTTGGGGTTGGCAGGGTCAGCAGCAGTGGCAGGTGTAGGCAGCAGCGGCGGAGATGGGCGGGGCTGGGTGTGGGTGGGAGTGGGAGTGGGAGACGGAGCAGAATAAGGGGAGGGAGCAGTAGGAGGAGGCGCTGCTGCTGGTACTGGAGCAGTCGGAGGCGTAGTCGTGGTTGTTGTCGGGGGCAGAGGCGATTGCGCTGCTTGGCTTGGCGGTTTAGGAGGCGATGGTGAATTTCTGGGTGGCGGTGGTGGTGGTGGTGGCGGTGGCGAGGCAGCAAGCGGTGGCGTTGCGGACGGTAGAGGTGGGGAGGCGGGCGGCGGGGAAGTGGGAGTGGTGTCGGCCGGCGTGGCATTGGGGTTGGAGGAAGAGGCTGCAGCTGCAGGTGCTAGTGGTAGTGGGGAGGTGGTGGGCGTGGTGGCGGCAAGGCCAAGGGCGACTGACGGTGAGGAGGAAGAAGAAGGGGACGCCGCTGCCGATTTCGATTTGTTGGCCATGGCGGCAGACAAGAGGTAACGATGGGAGCTCAGATCCAAACCCAGCGCCTTGCACTTGCACTTGAATCCATCATCATCATCGATCAATTCCTCTCCTCCTCCTCCTCATCTCATCTGCCTTGCCTTGTGAACCAACCAACCAACCCTCCTGAACCAAGGAACTAAGGAAGGAAGAGAGCTCTCGAATCGAATCGAAACCCACCAAATTTATCTTAGCCCCAATCCAGTCCCCCACCCCAGCACCAGCAGGCAGCAGCACAAGAAGAAGAAGAAAGCGGGGGTGCCGT
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| CDS seq | ATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCACTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGACACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTTGCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCTAAACCGCCAAGCCAAGCAGCGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCCCGCCCATCTCCGCCGCTGCTGCCTACACCTGCCACTGCTGCTGACCCTGCCAACCCCAACAAGGCCAGGCACCCCAGCTCCAACAAATCCTCCAGCCCTGCTGCTCCTCGACGCACTAACTCCTCCTCCTCACCGCCCAACCTTGCCATTGCTGTCGGTGCAGTGCTCGCCATCCTTGTGCTTAGCTTATTAGGAGCTGCTATATGGTACACTACCAAGAAAAAGAAGAAGCAGCGTAGGAGGGATAATGGCTACCGTGCTGGATTCATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCATGGGCAATTCCCGCTTCTTCACATACCAAGAACTGTACCAGATTACTGATGCTTTCTCAGCTCACAACCTGCTGGGGGAAGGAGGGTTTGGGTCTGTATACAAGGGCCACTTGCCAGATGGAAAACAAGTGGCTGTTAAGCAATTAAAAGATGGTGGTGGACAAGGGGAACGTGAATTCCAGGCTGAAGTCGAGATAATTAGCCGTGTGCATCACCGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGGACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAGAGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGACCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTGAAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAG
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| Protein seq | MANKSKSAAASPSSSSSPSVALGLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQPRPSPPLLPTPATAADPANPNKARHPSSNKSSSPAAPRRTNSSSSPPNLAIAVGAVLAILVLSLLGAAIWYTTKKKKKQRRRDNGYRAGFMSPTSPLSSHHPSSGSGASANVGSSLDPSFKTNYSAGSPKLKACMSDISMGNSRFFTYQELYQITDAFSAHNLLGEGGFGSVYKGHLPDGKQVAVKQLKDGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISNNQRLLVYDFVPNNTLHYHLHGHGRPVLDWSARVKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAHVADFGLARLALDAVTHVTTRVMGTFGYMAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASRPLGDESLVEWARPLLTQAIETGNLEELVDPRLERNFNEAEMFRMIEAAAACVRYSASRRPRMSQVVRALDSLADIDLTNGVQPGQSELFNVANTAEVRMFQRMVLGNHDDSSDMSQYGWSSSRQ |
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| Function | Proline-rich receptor-like protein kinase PERK8 [UniProtKB/Swiss-Prot:Q9FFW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0000040 | OsGoSa_05g0000040.02 | Chr05 | 47697 | 51615 | - | NAM | ||
| CDS seq | ATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCACTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGACACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTTGCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCTAAACCGCCAAGCCAAGCAGCGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCCCGCCCATCTCCGCCGCTGCTGCCTACACCTGCCACTGCTGCTGACCCTGCCAACCCCAACAAGGCCAGGCACCCCAGCTCCAACAAATCCTCCAGCCCTGCTGCTCCTCGACGCACTAACTCCTCCTCCTCACCGCCCAACCTTGCCATTGCTGTCGGTGCAGTGCTCGCCATCCTTGTGCTTAGCTTATTAGGAGCTGCTATATGGTACACTACCAAGAAAAAGAAGAAGCAGCGTAGGAGGGATAATGGCTACCGTGCTGGATTCATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCATGGGCAATTCCCGCTTCTTCACATACCAAGAACTGTACCAGATTACTGATGCTTTCTCAGCTCACAACCTGCTGGGGGAAGGAGGGTTTGGGTCTGTATACAAGGGCCACTTGCCAGATGGAAAACAAGTGGCTGTTAAGCAATTAAAAGATGGTGGTGGACAAGGGGAACGTGAATTCCAGGCTGAAGTCGAGATAATTAGCCGTGTGCATCACCGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGGACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAGAGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGACCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTGAAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAG
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| Protein seq | MANKSKSAAASPSSSSSPSVALGLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQPRPSPPLLPTPATAADPANPNKARHPSSNKSSSPAAPRRTNSSSSPPNLAIAVGAVLAILVLSLLGAAIWYTTKKKKKQRRRDNGYRAGFMSPTSPLSSHHPSSGSGASANVGSSLDPSFKTNYSAGSPKLKACMSDISMGNSRFFTYQELYQITDAFSAHNLLGEGGFGSVYKGHLPDGKQVAVKQLKDGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISNNQRLLVYDFVPNNTLHYHLHGHGRPVLDWSARVKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAHVADFGLARLALDAVTHVTTRVMGTFGYMAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASRPLGDESLVEWARPLLTQAIETGNLEELVDPRLERNFNEAEMFRMIEAAAACVRYSASRRPRMSQVVRALDSLADIDLTNGVQPGQSELFNVANTAEVRMFQRMVLGNHDDSSDMSQYGWSSSRQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0000040 | OsGoSa_05g0000040.03 | Chr05 | 47697 | 51615 | - | NAM | ||
| CDS seq | ATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCACTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGACACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTTGCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCTAAACCGCCAAGCCAAGCAGCGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCCCGCCCATCTCCGCCGCTGCTGCCTACACCTGCCACTGCTGCTGACCCTGCCAACCCCAACAAGGCCAGGCACCCCAGCTCCAACAAATCCTCCAGCCCTGCTGCTCCTCGACGCACTAACTCCTCCTCCTCACCGCCCAACCTTGCCATTGCTGTCGGTGCAGTGCTCGCCATCCTTGTGCTTAGCTTATTAGGAGCTGCTATATGGTACACTACCAAGAAAAAGAAGAAGCAGCGTAGGAGGGATAATGGCTACCGTGCTGGATTCATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCATGGGCAATTCCCGCTTCTTCACATACCAAGAACTGTACCAGATTACTGATGCTTTCTCAGCTCACAACCTGCTGGGGGAAGGAGGGTTTGGGTCTGTATACAAGGGCCACTTGCCAGATGGAAAACAAGTGGCTGTTAAGCAATTAAAAGATGGTGGTGGACAAGGGGAACGTGAATTCCAGGCTGAAGTCGAGATAATTAGCCGTGTGCATCACCGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGGACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAGAGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGACCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTGAAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAG
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| Protein seq | MANKSKSAAASPSSSSSPSVALGLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQPRPSPPLLPTPATAADPANPNKARHPSSNKSSSPAAPRRTNSSSSPPNLAIAVGAVLAILVLSLLGAAIWYTTKKKKKQRRRDNGYRAGFMSPTSPLSSHHPSSGSGASANVGSSLDPSFKTNYSAGSPKLKACMSDISMGNSRFFTYQELYQITDAFSAHNLLGEGGFGSVYKGHLPDGKQVAVKQLKDGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISNNQRLLVYDFVPNNTLHYHLHGHGRPVLDWSARVKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAHVADFGLARLALDAVTHVTTRVMGTFGYMAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASRPLGDESLVEWARPLLTQAIETGNLEELVDPRLERNFNEAEMFRMIEAAAACVRYSASRRPRMSQVVRALDSLADIDLTNGVQPGQSELFNVANTAEVRMFQRMVLGNHDDSSDMSQYGWSSSRQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_05g0000040 | OsGoSa_05g0000040.01 | Chr05 | 46562 | 51615 | - | NAM | ||
| CDS seq | ATGGCCAACAAATCGAAATCGGCAGCGGCGTCCCCTTCTTCTTCCTCCTCACCGTCAGTCGCCCTTGGCCTTGCCGCCACCACGCCCACCACCTCCCCACTACCACTAGCACCTGCAGCTGCAGCCTCTTCCTCCAACCCCAATGCCACGCCGGCCGACACCACTCCCACTTCCCCGCCGCCCGCCTCCCCACCTCTACCGTCCGCAACGCCACCGCTTGCTGCCTCGCCACCGCCACCACCACCACCACCGCCACCCAGAAATTCACCATCGCCTCCTAAACCGCCAAGCCAAGCAGCGCAATCGCCTCTGCCCCCGACAACAACCACGACTACGCCTCCGACTGCTCCAGTACCAGCAGCAGCGCCTCCTCCTACTGCTCCCTCCCCTTATTCTGCTCCGTCTCCCACTCCCACTCCCACCCACACCCAGCCCCGCCCATCTCCGCCGCTGCTGCCTACACCTGCCACTGCTGCTGACCCTGCCAACCCCAACAAGGCCAGGCACCCCAGCTCCAACAAATCCTCCAGCCCTGCTGCTCCTCGACGCACTAACTCCTCCTCCTCACCGCCCAACCTTGCCATTGCTGTCGGTGCAGTGCTCGCCATCCTTGTGCTTAGCTTATTAGGAGCTGCTATATGGTACACTACCAAGAAAAAGAAGAAGCAGCGTAGGAGGGATAATGGCTACCGTGCTGGATTCATGTCACCCACTTCTCCCTTGTCTTCTCACCACCCATCATCAGGATCAGGTGCCTCCGCAAATGTAGGATCATCGTTGGACCCTTCTTTCAAAACAAACTATAGCGCCGGAAGTCCCAAACTGAAAGCATGCATGTCTGATATTAGCATGGGCAATTCCCGCTTCTTCACATACCAAGAACTGTACCAGATTACTGATGCTTTCTCAGCTCACAACCTGCTGGGGGAAGGAGGGTTTGGGTCTGTATACAAGGGCCACTTGCCAGATGGAAAACAAGTGGCTGTTAAGCAATTAAAAGATGGTGGTGGACAAGGGGAACGTGAATTCCAGGCTGAAGTCGAGATAATTAGCCGTGTGCATCACCGTCATCTGGTATCTCTTGTGGGATATTGCATTTCCAATAACCAAAGGTTACTTGTCTACGACTTTGTGCCTAATAACACCCTTCATTATCATCTTCACGGACACGGGAGGCCTGTTCTAGATTGGTCGGCTAGGGTTAAAATTGCTGCAGGTGCTGCTCGTGGAATAGCGTATCTACATGAAGATTGCCATCCAAGGATAATCCACCGAGACATCAAGTCCTCAAACATTTTGTTGGATAATAACTTTGAGGCACATGTGGCTGATTTTGGTCTTGCGAGGTTGGCTTTGGACGCTGTAACTCATGTAACTACCCGTGTAATGGGGACATTTGGGTACATGGCTCCAGAATATGCATCAAGTGGGAAATTGACTGAGAGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAACCTGTTGATGCATCAAGGCCATTGGGTGATGAGAGCCTTGTTGAGTGGGCTAGACCATTGCTTACTCAAGCTATTGAGACAGGTAATTTGGAAGAGTTGGTCGACCCCAGGCTTGAGAGGAACTTCAATGAAGCTGAAATGTTCCGTATGATTGAAGCTGCAGCAGCCTGTGTTCGATACTCCGCATCAAGGAGGCCCAGAATGAGCCAGGTGGTGCGAGCTCTTGATAGCTTAGCCGATATTGATCTTACAAATGGCGTTCAGCCAGGGCAGAGCGAGCTTTTCAATGTGGCGAACACAGCAGAGGTTAGGATGTTCCAGCGGATGGTGCTGGGCAACCACGATGACAGCTCCGACATGAGCCAATACGGTTGGAGCAGCAGTCGCCAGTAG
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| Protein seq | MANKSKSAAASPSSSSSPSVALGLAATTPTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAPSPYSAPSPTPTPTHTQPRPSPPLLPTPATAADPANPNKARHPSSNKSSSPAAPRRTNSSSSPPNLAIAVGAVLAILVLSLLGAAIWYTTKKKKKQRRRDNGYRAGFMSPTSPLSSHHPSSGSGASANVGSSLDPSFKTNYSAGSPKLKACMSDISMGNSRFFTYQELYQITDAFSAHNLLGEGGFGSVYKGHLPDGKQVAVKQLKDGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISNNQRLLVYDFVPNNTLHYHLHGHGRPVLDWSARVKIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAHVADFGLARLALDAVTHVTTRVMGTFGYMAPEYASSGKLTERSDVFSFGVVLLELITGRKPVDASRPLGDESLVEWARPLLTQAIETGNLEELVDPRLERNFNEAEMFRMIEAAAACVRYSASRRPRMSQVVRALDSLADIDLTNGVQPGQSELFNVANTAEVRMFQRMVLGNHDDSSDMSQYGWSSSRQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 47697 | 48213 | - | OsGoSa_05g0000040.03 | OsGoSa_05g0000040.03,OsGoSa_05g0000040.02 | All |
| AL | Chr05 | 46562 | 48029 | - | OsGoSa_05g0000040.01 | OsGoSa_05g0000040.01,OsGoSa_05g0000040.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.557271 | 6.801218 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0100700 | RBH | 1.990112 | 2.133766 | 8.260153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01040 | RBH | 2.411827 | 1.219641 | 2.527450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0100700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000070 | RBH | 0.254371 | 7.954749 | 12.286197 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000070 | RBH | 0.188482 | 2.410840 | 3.051954 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000070 | RBH | 0.329402 | 3.768152 | 10.869828 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000070 | RBH | 0.219233 | 0.398601 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000070 | RBH | 5.258686 | 15.504333 | 24.379698 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0009200 | SBH | 16.8901985 | 27.262843 | 23.8322105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000070 | RBH | 0.233617 | 0.715560 | 1.484508 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0000700 | RBH | 8.8769885 | 6.0577705 | 18.001149 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000080 | RBH | 0.083245 | 0.163759 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000020 | RBH | 0.149811 | 9.528794 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0000800 | RBH | 0.785769 | 7.364565 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000070 | RBH | 0.123837 | 0.104899 | 3.370809 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000080 | RBH | 0.226140 | 4.896055 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000050 | RBH | 0.478912 | 3.259991 | 3.746557 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000070 | RBH | 0.292030 | 16.068928 | 7.176129 |
