Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0029700 | OGI:04099900 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:36201652-36204512 | ||||||||
| Gene Symbol | OsSTA135, STA135, OsODD21, ODD21, 2-ODD21, Os2-ODD21, Os2ODD21, M2H, OsM2H | ||||||||||
| DNA seq | taactgtacgtactcttgtagctatagttactaaggatgtataactaaatattgattacatgtgttacagtgttgcacagtacagattgacatcactttttctttgaccaacaatccaacataaagtcgaacaaacttcccgaagtaggagtttttaggtggtttaaatactttatccgaataatgccatcttgcTAtatatgttctgatacagcactaccactgttcctcttcagggtttgtcgatcctgaggctctcgacatacctcttatacctgttcatgtttgctggcaggaagtccaggaagtcctggaagctgcttcccctgtacattttggggtggtgttcatcgacgagctcttcggcgcagtggacctcttcatccatcgagagaccatggatgctggcaatagaaatccttgactcgtttgggttgagaacggctcgatggacaagggacttgagctggccattgctcaacacttccaggtggtctcctacatggacatggagagccccagggatagcagggacagatgtccaggcatcatcctcatggtgcatcacctcaagccctggggagctctgcaacaggatggtgaggaagccataatcagagtgaggagccaagccgatcttgtcggctttcttcgccgatgactgcgggtagttgttcaaggccacgaactgcacccctccttcaagcttttcttgcaggtacgatggccctaatcccaggccctgcaggattgcttccatgagctgcattgacactcgctgcgtctccacggcgtactcacccattttctccctggtgtgccatttgtcacacaagttaggatggttgtcaagatgcatccagtgatcactcaccactgtgctaatgtggatgatctctgcattgcggttgcaggttacctgtaagttggtggctgcgtcggccagaacttgatccagtcgtccaggggattggcatagtgcttcagaaatgacctggacatgctgatcccgtccctcgagctcgtgtcgtacctgatgggctgccggatgtcgtccgacgcgaactcctccttgcgctccgtcgatagctggaagaactcggaggcggcttcgagggcgccattcatgcaagacctgctgatgccatggttcaccacctgcaggtaagtcgagcacaatggtctatcagctgtctctggtatatctggcgttcgtcagtttcgcatgcagatgcagttttgttactcattttcatgagttggcagcagcttccttttcacgtactacgtgtaagcaaaaaacattcatgtcacatccggtactagattcgttttttatgagaaagagagagtacgtgtaagcaaaacattcttgtgtctggtatcacatgcatgtgtaataacaactgacaggtgttggaggacaggacaagcagaggaggatgcagggtggtgacaagtaagcagcactaacctcaaagcagccacgttcacggcacgccagcacgatatcccgcacggcgagcgcccgcgaggcactgtccatggtgagccggcccaggttgatcaccggcaatggccgcggcggcggcggcagcggcggaggcactcccttgtgctggctcgccatgtacaagctcccggccacggcgggcatgccacccttctatcttctccggcgagcttgagagcaaacaacacagaggacaggtctctacactgcactgcactgcactactacctcctgagaacacaggatgCctccagcacagcacagatgcccaagtatttataagctctgatgaatctgcagcatcagagagactgaaagcggcatggcatagagtcaactgggcagcgggtaaatcccctgcacgtagaccatcttgtatcggccaaatcaatattggggcttttcagggcgattctgtccaggagcaggcaattggctcacctcctcatcttgcgttgcgtttgcgtatgcacacacaacacaactactactaccactacttacttcgtagtagtgcatgcttagtaagtccagatgagcagctacaggtgcaggccatttcgatccaagatagtggccaccagctgtgtcgccgtcgatctgtgactgtgatgagtgaccctgctgcctgccgaacattttgttattcctccctcagcctgcgagttgccgctgggtgcatcccgctttgctttctctctctgtctatccctggataatgcttgtttttcaggcggagttgggggtgacttgtggtggtgggtcttttgctcacggtggtgatggagacgacgaatcccgcggcaaagttggggggaggagacctgccgatgcagagggggggtttccggttttggattctgggacatgacaaaatggctcctttttttttcagtttcaaGggggggaaagcaacagccttgcttttccacgttagaatagtagtgctagcacttcccatgttgtagcgagtggcaaagaacaagtagaaagcTtttcttaacgagcaggtaatcatcgttattgcgtaaaaatagtactccaagtgttggaatagtagcacacttcccatgttgtagcgagtggcaaagaacaaatagagaacttttctcaacgagcaggtaatcatcgttattagataaaaacaaaagtgctccaagaaagagaaaataaaacaggatacggtgctttaaacttttcttagttttcttttcgctggtaattccctttttgtgaatttttttgatactttttcagcggaagatacttctgaggtccttttggtcccattggcgtagtttatcacactttttaaccaaatttgatcacctttttggctattgtttgg
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| CDS seq | atgcccgccgtggccgggagcttgtacatggcgagccagcacaagggagtgcctccgccgctgccgccgccgccgcggccattgccggtgatcaacctgggccggctcaccatggacagtgcctcgcgggcgctcgccgtgcgggatatcgtgctggcgtgccgtgaacgtggctgctttgaggtggtgaaccatggcatcagcaggtcttgcatgaatggcgccctcgaagccgcctccgagttcttccagctatcgacggagcgcaaggaggagttcgcgtcggacgacatccggcagcccatcaggtacgacacgagctcgagggacgggatcagcatgtccaggtcatttctgaagcactatgccaatcccctggacgactggatcaagttctggccgacgcagccaccaacttacagggagaaaatgggtgagtacgccgtggagacgcagcgagtgtcaatgcagctcatggaagcaatcctgcagggcctgggattagggccatcgtacctgcaagaaaagcttgaaggaggggtgcagttcgtggccttgaacaactacccgcagtcatcggcgaagaaagccgacaagatcggcttggctcctcactctgattatggcttcctcaccatcctgttgcagagctccccagggcttgaggtgatgcaccatgaggatgatgcctggacatctgtccctgctatccctggggctctccatgtccatgtaggagaccacctggaagtgttgagcaatggccagctcaagtcccttgtccatcgagccgttctcaacccaaacgagtcaaggatttctattgccagcatccatggtctctcgatggatgaagaggtccactgcgccgaagagctcgtcgatgaacaccaccccaaaatgtacaggggaagcagcttccaggacttcctggacttcctgccagcaaacatgaacaggtataagaggtatgtcgagagcctcaggatcgacaaaccctga
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| Protein seq | MPAVAGSLYMASQHKGVPPPLPPPPRPLPVINLGRLTMDSASRALAVRDIVLACRERGCFEVVNHGISRSCMNGALEAASEFFQLSTERKEEFASDDIRQPIRYDTSSRDGISMSRSFLKHYANPLDDWIKFWPTQPPTYREKMGEYAVETQRVSMQLMEAILQGLGLGPSYLQEKLEGGVQFVALNNYPQSSAKKADKIGLAPHSDYGFLTILLQSSPGLEVMHHEDDAWTSVPAIPGALHVHVGDHLEVLSNGQLKSLVHRAVLNPNESRISIASIHGLSMDEEVHCAEELVDEHHPKMYRGSSFQDFLDFLPANMNRYKRYVESLRIDKP |
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| Function | 2-oxoglutarate-dependent dioxygenase 21, chloroplastic [UniProtKB/Swiss-Prot:Q7XR83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0029700 | OsGoSa_04g0029700.01 | Chr04 | 36201652 | 36204512 | - | NAM | ||
| CDS seq | atgcccgccgtggccgggagcttgtacatggcgagccagcacaagggagtgcctccgccgctgccgccgccgccgcggccattgccggtgatcaacctgggccggctcaccatggacagtgcctcgcgggcgctcgccgtgcgggatatcgtgctggcgtgccgtgaacgtggctgctttgaggtggtgaaccatggcatcagcaggtcttgcatgaatggcgccctcgaagccgcctccgagttcttccagctatcgacggagcgcaaggaggagttcgcgtcggacgacatccggcagcccatcaggtacgacacgagctcgagggacgggatcagcatgtccaggtcatttctgaagcactatgccaatcccctggacgactggatcaagttctggccgacgcagccaccaacttacagggagaaaatgggtgagtacgccgtggagacgcagcgagtgtcaatgcagctcatggaagcaatcctgcagggcctgggattagggccatcgtacctgcaagaaaagcttgaaggaggggtgcagttcgtggccttgaacaactacccgcagtcatcggcgaagaaagccgacaagatcggcttggctcctcactctgattatggcttcctcaccatcctgttgcagagctccccagggcttgaggtgatgcaccatgaggatgatgcctggacatctgtccctgctatccctggggctctccatgtccatgtaggagaccacctggaagtgttgagcaatggccagctcaagtcccttgtccatcgagccgttctcaacccaaacgagtcaaggatttctattgccagcatccatggtctctcgatggatgaagaggtccactgcgccgaagagctcgtcgatgaacaccaccccaaaatgtacaggggaagcagcttccaggacttcctggacttcctgccagcaaacatgaacaggtataagaggtatgtcgagagcctcaggatcgacaaaccctga
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| Protein seq | MPAVAGSLYMASQHKGVPPPLPPPPRPLPVINLGRLTMDSASRALAVRDIVLACRERGCFEVVNHGISRSCMNGALEAASEFFQLSTERKEEFASDDIRQPIRYDTSSRDGISMSRSFLKHYANPLDDWIKFWPTQPPTYREKMGEYAVETQRVSMQLMEAILQGLGLGPSYLQEKLEGGVQFVALNNYPQSSAKKADKIGLAPHSDYGFLTILLQSSPGLEVMHHEDDAWTSVPAIPGALHVHVGDHLEVLSNGQLKSLVHRAVLNPNESRISIASIHGLSMDEEVHCAEELVDEHHPKMYRGSSFQDFLDFLPANMNRYKRYVESLRIDKP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.966255 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0667400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g57180 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0667400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030220 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030990 | RBH | 0.103990 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030560 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030390 | RBH | 0.029251 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030650 | RBH | 0.000000 | 0.0 | 0.463805 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0537100 | RBH | 1.5647455 | 6.7503885 | 6.6539355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029300 | RBH | 0.0 | 0.065791 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0542100 | RBH | 1.3064035 | 4.907718 | 5.4095475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029730 | RBH | 0.030082 | 0.046007 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030260 | RBH | 0.048427 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029740 | RBH | 0.0 | 0.364819 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029460 | RBH | 0.0 | 6.335392 | 0.643900 |
