Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0023870 | OGI:04087470 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:31734809-31737043 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccactcccgacctctagtttccagagtgatggccAaatgctactcggagtggcctcctctcccccctctccatccaccgagacgaacaccatcgcagacctcgctttggacgatcaggaggcagcttgcgtcgttcgtcttgcactgctccaggtcgtgtgcttcccctcttcttgagcccaagaatttgcccgatgagttccatgctgtgtctgcctcgacgccggcgccggtgccggtgccggtgtccccgcttccggatgctccgaagctcggcatatccaacaagttcatccggggcctctgcagcgaccggcagaccgagcagctcgccttcgagtgctacaggagggctctgcaccagccggagttcctgccggacaagaagacgatgaacgccctgaccgtgcagctgctcagggctaagcagtggagctcgctggagttcctggttgaagatttcagggcctatggggtgatgccggagcggcggacgtgcgcgcggctcgtcgcgagctgcgtcaaggcgaggaagttcgggctcgccgacatggtgctcggggtcctcgaaggcaagaggggtgcacctgccgctgtcgccttcagctcggcgatgcaggcgtacaacaagctgcacatgtaccggagcacgctgctggtgtacgagcggatgagggcggctcggttgtcgcgcgacgccgacgcctaccgcgccgtgatggcggcgtgcggggcgttgggcaagccggagatggtggcttcactgctcaagcagtacaagtcccacaaatggtacccctctgaaagctgtgtcgagacatacgccatcgtctgcgacgcactcggacgagcaggtagagcctcggatgcgctgaaatgcctgcgagagatggaagcagacggcatcgcgccgaatgccacaatctactcttcgatcatcagatctttggcagatgcccatgaatcttctgcagcagaagacctgtacaacgaagcatggaagaaagggatgctGggggatccggacatgttcctgaaggtgatcgtcatgcatgttgaggccgggagagtggagaagacaatgggagttgccaaggacatgagggagactggtctgagggtcaccgattgtatcctatcaaccattgtcaatggctttgtgaagaggagaggcctcaagccggctatcagagcttatgacaagctgattgctttaggatgtgagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagcgacagggcggaatctgtcttctcggagatgatcgatcgaggctttgacaagtgtgtggttgcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgaggctgcttgctgtgatgaagaagaagaggtgcgagcctaatatctgggtgtacaactccctcctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatgatgcgccgcaagattcagcctgacaggatcagctacaccGcgatcatcaacgcgttcaaccggtcgggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggaggaaaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattcaacgagctcatcgagcttctgaaggatatgcaaggcacacgactggacaggaggctgtacctgaccgtgttgaggagcctccgagacgccgggctggaggtccatgtgaagtggctccaaactaatttcagtttcgtggaagagaaaacctgatggatccatgagttatctgtgctgttcatcttcagcaccgaagcatcgcgacgatcgggtatctgcaaaagcattgctctgtacatcgacagAaaaaatgggtaaatatttgcttgcctcaatgcgctttgtcgaaactatatgcttatgctgctggcttccaaccgccattgtaaatgtattctgggagatacacctttgtaccagtaatgatctgattacagatttattggataagttgcattgctcagtagatctgcatttgccagatttattgaactcacttgtaatatagccctcttcggcaaatgtaacttttgcatcagtactgaactttgtacatttcttcagcgcttaacatcttttcgaatctctgagat
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| CDS seq | atggccAaatgctactcggagtggcctcctctcccccctctccatccaccgagacgaacaccatcgcagacctcgctttggacgatcaggaggcagcttgcgtcgttcgtcttgcactgctccaggtcgtgtgcttcccctcttcttgagcccaagaatttgcccgatgagttccatgctgtgtctgcctcgacgccggcgccggtgccggtgccggtgtccccgcttccggatgctccgaagctcggcatatccaacaagttcatccggggcctctgcagcgaccggcagaccgagcagctcgccttcgagtgctacaggagggctctgcaccagccggagttcctgccggacaagaagacgatgaacgccctgaccgtgcagctgctcagggctaagcagtggagctcgctggagttcctggttgaagatttcagggcctatggggtgatgccggagcggcggacgtgcgcgcggctcgtcgcgagctgcgtcaaggcgaggaagttcgggctcgccgacatggtgctcggggtcctcgaaggcaagaggggtgcacctgccgctgtcgccttcagctcggcgatgcaggcgtacaacaagctgcacatgtaccggagcacgctgctggtgtacgagcggatgagggcggctcggttgtcgcgcgacgccgacgcctaccgcgccgtgatggcggcgtgcggggcgttgggcaagccggagatggtggcttcactgctcaagcagtacaagtcccacaaatggtacccctctgaaagctgtgtcgagacatacgccatcgtctgcgacgcactcggacgagcaggtagagcctcggatgcgctgaaatgcctgcgagagatggaagcagacggcatcgcgccgaatgccacaatctactcttcgatcatcagatctttggcagatgcccatgaatcttctgcagcagaagacctgtacaacgaagcatggaagaaagggatgctGggggatccggacatgttcctgaaggtgatcgtcatgcatgttgaggccgggagagtggagaagacaatgggagttgccaaggacatgagggagactggtctgagggtcaccgattgtatcctatcaaccattgtcaatggctttgtgaagaggagaggcctcaagccggctatcagagcttatgacaagctgattgctttaggatgtgagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagcgacagggcggaatctgtcttctcggagatgatcgatcgaggctttgacaagtgtgtggttgcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgaggctgcttgctgtgatgaagaagaagaggtgcgagcctaatatctgggtgtacaactccctcctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatgatgcgccgcaagattcagcctgacaggatcagctacaccGcgatcatcaacgcgttcaaccggtcgggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggaggaaaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattcaacgagctcatcgagcttctgaaggatatgcaaggcacacgactggacaggaggctgtacctgaccgtgttgaggagcctccgagacgccgggctggaggtccatgtgaagtggctccaaactaatttcagtttcgtggaagagaaaacctga
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| Protein seq | MAKCYSEWPPLPPLHPPRRTPSQTSLWTIRRQLASFVLHCSRSCASPLLEPKNLPDEFHAVSASTPAPVPVPVSPLPDAPKLGISNKFIRGLCSDRQTEQLAFECYRRALHQPEFLPDKKTMNALTVQLLRAKQWSSLEFLVEDFRAYGVMPERRTCARLVASCVKARKFGLADMVLGVLEGKRGAPAAVAFSSAMQAYNKLHMYRSTLLVYERMRAARLSRDADAYRAVMAACGALGKPEMVASLLKQYKSHKWYPSESCVETYAIVCDALGRAGRASDALKCLREMEADGIAPNATIYSSIIRSLADAHESSAAEDLYNEAWKKGMLGDPDMFLKVIVMHVEAGRVEKTMGVAKDMRETGLRVTDCILSTIVNGFVKRRGLKPAIRAYDKLIALGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKKRCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDMQGTRLDRRLYLTVLRSLRDAGLEVHVKWLQTNFSFVEEKT |
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| Function | Pentatricopeptide repeat-containing protein At5g13770, chloroplastic [UniProtKB/Swiss-Prot:Q66GP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0023870 | OsGoSa_04g0023870.01 | Chr04 | 31734809 | 31737043 | + | NAM | ||
| CDS seq | atggccAaatgctactcggagtggcctcctctcccccctctccatccaccgagacgaacaccatcgcagacctcgctttggacgatcaggaggcagcttgcgtcgttcgtcttgcactgctccaggtcgtgtgcttcccctcttcttgagcccaagaatttgcccgatgagttccatgctgtgtctgcctcgacgccggcgccggtgccggtgccggtgtccccgcttccggatgctccgaagctcggcatatccaacaagttcatccggggcctctgcagcgaccggcagaccgagcagctcgccttcgagtgctacaggagggctctgcaccagccggagttcctgccggacaagaagacgatgaacgccctgaccgtgcagctgctcagggctaagcagtggagctcgctggagttcctggttgaagatttcagggcctatggggtgatgccggagcggcggacgtgcgcgcggctcgtcgcgagctgcgtcaaggcgaggaagttcgggctcgccgacatggtgctcggggtcctcgaaggcaagaggggtgcacctgccgctgtcgccttcagctcggcgatgcaggcgtacaacaagctgcacatgtaccggagcacgctgctggtgtacgagcggatgagggcggctcggttgtcgcgcgacgccgacgcctaccgcgccgtgatggcggcgtgcggggcgttgggcaagccggagatggtggcttcactgctcaagcagtacaagtcccacaaatggtacccctctgaaagctgtgtcgagacatacgccatcgtctgcgacgcactcggacgagcaggtagagcctcggatgcgctgaaatgcctgcgagagatggaagcagacggcatcgcgccgaatgccacaatctactcttcgatcatcagatctttggcagatgcccatgaatcttctgcagcagaagacctgtacaacgaagcatggaagaaagggatgctGggggatccggacatgttcctgaaggtgatcgtcatgcatgttgaggccgggagagtggagaagacaatgggagttgccaaggacatgagggagactggtctgagggtcaccgattgtatcctatcaaccattgtcaatggctttgtgaagaggagaggcctcaagccggctatcagagcttatgacaagctgattgctttaggatgtgagcctggccaggtcacctatgcatcagtcatcaacgtttactgccagcttgggcggagcgacagggcggaatctgtcttctcggagatgatcgatcgaggctttgacaagtgtgtggttgcatatggtaacatgatctccatgtatgggaagatcagtagagcgtcggacgcgatgaggctgcttgctgtgatgaagaagaagaggtgcgagcctaatatctgggtgtacaactccctcctggacatgcacggaagactcgggaattcgaggcaggctgagaagatctggaaggagatgatgcgccgcaagattcagcctgacaggatcagctacaccGcgatcatcaacgcgttcaaccggtcgggagaactggaccggtgcatggatttgtaccaggagttcagggagacaggaggaaaggtggacacggccctggctgggctcatggtaggggtgttctctaaatgcagccgattcaacgagctcatcgagcttctgaaggatatgcaaggcacacgactggacaggaggctgtacctgaccgtgttgaggagcctccgagacgccgggctggaggtccatgtgaagtggctccaaactaatttcagtttcgtggaagagaaaacctga
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| Protein seq | MAKCYSEWPPLPPLHPPRRTPSQTSLWTIRRQLASFVLHCSRSCASPLLEPKNLPDEFHAVSASTPAPVPVPVSPLPDAPKLGISNKFIRGLCSDRQTEQLAFECYRRALHQPEFLPDKKTMNALTVQLLRAKQWSSLEFLVEDFRAYGVMPERRTCARLVASCVKARKFGLADMVLGVLEGKRGAPAAVAFSSAMQAYNKLHMYRSTLLVYERMRAARLSRDADAYRAVMAACGALGKPEMVASLLKQYKSHKWYPSESCVETYAIVCDALGRAGRASDALKCLREMEADGIAPNATIYSSIIRSLADAHESSAAEDLYNEAWKKGMLGDPDMFLKVIVMHVEAGRVEKTMGVAKDMRETGLRVTDCILSTIVNGFVKRRGLKPAIRAYDKLIALGCEPGQVTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLLAVMKKKRCEPNIWVYNSLLDMHGRLGNSRQAEKIWKEMMRRKIQPDRISYTAIINAFNRSGELDRCMDLYQEFRETGGKVDTALAGLMVGVFSKCSRFNELIELLKDMQGTRLDRRLYLTVLRSLRDAGLEVHVKWLQTNFSFVEEKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 31.292475 | 8.466151 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0583101 | RBH | 0.000000 | 0.000000 | 7.018065 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49350 | RBH | 7.284560 | 5.646699 | 1.797820 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0583101 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024270 | RBH | 1.118263 | 3.539027 | 2.923211 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025010 | RBH | 2.764510 | 1.907820 | 5.758965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024710 | RBH | 1.696295 | 3.486096 | 10.216356 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024490 | RBH | 0.341329 | 0.129186 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024670 | RBH | 61.472679 | 4.509217 | 12.971316 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0464600 | RBH | 17.47818 | 3.4692035 | 3.705615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023450 | RBH | 0.223264 | 0.343436 | 3.151572 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0467500 | RBH | 52.439731 | 4.1197965 | 4.2160835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023920 | RBH | 2.664051 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023730 | RBH | 5.800449 | 9.500125 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021760 | SBH | 4.530016 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024260 | RBH | 0.888876 | 0.104404 | 5.394850 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024460 | RBH | 0.613642 | 1.249815 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023710 | RBH | 1.040760 | 0.765429 | 3.855077 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023620 | RBH | 1.668266 | 10.326926 | 15.313784 |
