Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0013740 | OGI:04066660 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:23631704-23633847 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaccctcccagctcactgacattgactcatcgctgtcatcatcacagtatttgtagtctggagcaatctcaaatcgaactggtgtcaggggattgctgtcattgatgcactgggcagccctctcccctaactttctgttcccgtattccctgcagcagtcaaagatccttaaccacatcgcagttgttggctcgaatggcatgtgacctataaaatcctcaagctcaaccatgtagccatgcttgcccaacagctcaatcatgcattcatagtgctcaatgcgaggcacgatgttatattcatcagtcatctgggtgaaataactccgtcccaacccgacgtgcccttcgcTTatacatgaaaccagtgcaccgaggaaagtgacagagtctggtgtaatcccctgcttgctcatttcaaagaacaattcaagcccatactcgcctttgccattataagcacatccaaagatcatcgaattccagaggatgacatcttgagatggtcctgcctcaaagatcctcatggagtaatcaaacaatctacacttggagtacatgtcaataagtgcactttgcagtatatcatcaatcacataaccgttcctgatcatgtatgcatgaatctgcttcccgtgattaaggagaaatatgttggcacaggctgccaGTgctgagctgaacgtcgattggttaggtgtcgcctcataatgcatctcaCtgagtgcaagcagagctgcttcactcatggagtggcgttcataacctgagataagcgagttccaggagtaactgtctctttctgatcccatctcaaatagaagaagccgttcggcactccttaagcatccacatttggaatacatcctcaagagagcattcttcaggaaaggatAACCAATAaaaccacTcttgaaagcgaaagtgtggacctcctcacctttCtcaagatcaagaagCccagtacaagcattgagcacacagccgagagtaacagcatcaagctccttcgtctcctgcctcaTCtgctggaacaattgcaaggcactagtcagatccatggatctgacataaccagttaacatagcgttccaggacactaaattgtgttcttccatCccttcaaacacccgctttgcatcagtaatcctcccgcaggaagccaatcctgacacaattgaagtagacattacgatatccttcactggtgccaagtcgaagagcctctgggctaaatcaatggcaccacacttcgcatacatatccAcaacagagctcctcacatgcacgtgctgctcatacccatgtcggagcacaaaagtatgtatgcgccttccctcttcaagcgcaccattatctcggcaagcaagaagtgcttgtgagacagtaTaaacaagtggactaactcctgcccagaccatccgaaagaacatgtcaattgccatatCccccatcccagcaagaagatagcgccgaataatgacattccacgagatgtcattgggttttGggatgccatcaaatgccctccttgcctctgaaagggcaaagcacttcccatacacgtcaaccagtgccgtgccaagaatcacatttgactgaaagtccctcttggcgatatggccatggagctgccgggcaccatggaggtccaggcactcggcgcaacacccgagcaccgatgccagagtgacgtccttggggcgaacgccacaggagttcatggcagagaaaagggaaatcgcttcagtgggttcctccccacgggagtaagccgagatgatggcgttccaagaaccaccatcccggcgcggcattgcgtcgaacagcttccgcgcgtcggtgaggctgccgcaagcggcgagcgactcgacggcgcggtGAAGAGGAAGGTGGAGGTGGCGGTAAAGGAATGGGAGGTGGAGGGTGCAGTGGAGGATGCAAGGTGGGTGGCAATGCGGCGGGCGGCGGCGAGTGACCGGTGGGAGGTGGCTAGGCGGAGGAGGGAGGCGTAGACCGCGGAAGGGACCTGGGAGGAGGAGTATGACGGGGGGAGGGCGTCGAGGGCGGCGAAGAGACGGCCGGCGGCGACAAGAGCGGAGATGGAGGACGCGGTTGAGGCGGCGGCGGCGGCGGCCGCCAT
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| CDS seq | ATGGCGGCCGCCGCCGCCGCCGCCTCAACCGCGTCCTCCATCTCCGCTCTTGTCGCCGCCGGCCGTCTCTTCGCCGCCCTCGACGCCCTCCCCCCGTCATACTCCTCCTCCCAGGTCCCTTCCGCGGTCTACGCCTCCCTCCTCCGCCTAGCCACCTCCCACCGcctcaccgacgcgcggaagctgttcgacgcaatgccgcgccgggatggtggttcttggaacgccatcatctcggcttactcccgtggggaggaacccactgaagcgatttcccttttctctgccatgaactcctgtggcgttcgccccaaggacgtcactctggcatcggtgctcgggtgttgcgccgagtgcctggacctccatggtgcccggcagctccatggccatatcgccaagagggactttcagtcaaatgtgattcttggcacggcactggttgacgtgtatgggaagtgctttgccctttcagaggcaaggagggcatttgatggcatccCaaaacccaatgacatctcgtggaatgtcattattcggcgctatcttcttgctgggatggggGatatggcaattgacatgttctttcggatggtctgggcaggagttagtccacttgtttAtactgtctcacaagcacttcttgcttgccgagataatggtgcgcttgaagagggaaggcgcatacatacttttgtgctccgacatgggtatgagcagcacgtgcatgtgaggagctctgttgTggatatgtatgcgaagtgtggtgccattgatttagcccagaggctcttcgacttggcaccagtgaaggatatcgtaatgtctacttcaattgtgtcaggattggcttcctgcgggaggattactgatgcaaagcgggtgtttgaaggGatggaagaacacaatttagtgtcctggaacgctatgttaactggttatgtcagatccatggatctgactagtgccttgcaattgttccagcaGAtgaggcaggagacgaaggagcttgatgctgttactctcggctgtgtgctcaatgcttgtactggGcttcttgatcttgaGaaaggtgaggaggtccacactttcgctttcaagAgtggtttTATTGGTTatcctttcctgaagaatgctctcttgaggatgtattccaaatgtggatgcttaaggagtgccgaacggcttcttctatttgagatgggatcagaaagagacagttactcctggaactcgcttatctcaggttatgaacgccactccatgagtgaagcagctctgcttgcactcaGtgagatgcattatgaggcgacacctaaccaatcgacgttcagctcagcACtggcagcctgtgccaacatatttctccttaatcacgggaagcagattcatgcatacatgatcaggaacggttatgtgattgatgatatactgcaaagtgcacttattgacatgtactccaagtgtagattgtttgattactccatgaggatctttgaggcaggaccatctcaagatgtcatcctctggaattcgatgatctttggatgtgcttataatggcaaaggcgagtatgggcttgaattgttctttgaaatgagcaagcaggggattacaccagactctgtcactttcctcggtgcactggtttcatgtatAAgcgaagggcacgtcgggttgggacggagttatttcacccagatgactgatgaatataacatcgtgcctcgcattgagcactatgaatgcatgattgagctgttgggcaagcatggctacatggttgagcttgaggattttataggtcacatgccattcgagccaacaactgcgatgtggttaaggatctttgactgctgcagggaatacgggaacagaaagttaggggagagggctgcccagtgcatcaatgacagcaatcccctgacaccagttcgatttgagattgctccagactacaaatactgtgatgatgacagcgatgagtcaatgtcagtgagctgggagggttaa
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| Protein seq | MAAAAAAASTASSISALVAAGRLFAALDALPPSYSSSQVPSAVYASLLRLATSHRLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISWNVIIRRYLLAGMGDMAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIHTFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLDLEKGEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYSKCRLFDYSMRIFEAGPSQDVILWNSMIFGCAYNGKGEYGLELFFEMSKQGITPDSVTFLGALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECMIELLGKHGYMVELEDFIGHMPFEPTTAMWLRIFDCCREYGNRKLGERAAQCINDSNPLTPVRFEIAPDYKYCDDDSDESMSVSWEG |
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| Function | Pentatricopeptide repeat-containing protein At3g26540 [UniProtKB/Swiss-Prot:Q9LRV2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0013740 | OsGoSa_04g0013740.01 | Chr04 | 23631704 | 23633847 | - | NAM | ||
| CDS seq | ATGGCGGCCGCCGCCGCCGCCGCCTCAACCGCGTCCTCCATCTCCGCTCTTGTCGCCGCCGGCCGTCTCTTCGCCGCCCTCGACGCCCTCCCCCCGTCATACTCCTCCTCCCAGGTCCCTTCCGCGGTCTACGCCTCCCTCCTCCGCCTAGCCACCTCCCACCGcctcaccgacgcgcggaagctgttcgacgcaatgccgcgccgggatggtggttcttggaacgccatcatctcggcttactcccgtggggaggaacccactgaagcgatttcccttttctctgccatgaactcctgtggcgttcgccccaaggacgtcactctggcatcggtgctcgggtgttgcgccgagtgcctggacctccatggtgcccggcagctccatggccatatcgccaagagggactttcagtcaaatgtgattcttggcacggcactggttgacgtgtatgggaagtgctttgccctttcagaggcaaggagggcatttgatggcatccCaaaacccaatgacatctcgtggaatgtcattattcggcgctatcttcttgctgggatggggGatatggcaattgacatgttctttcggatggtctgggcaggagttagtccacttgtttAtactgtctcacaagcacttcttgcttgccgagataatggtgcgcttgaagagggaaggcgcatacatacttttgtgctccgacatgggtatgagcagcacgtgcatgtgaggagctctgttgTggatatgtatgcgaagtgtggtgccattgatttagcccagaggctcttcgacttggcaccagtgaaggatatcgtaatgtctacttcaattgtgtcaggattggcttcctgcgggaggattactgatgcaaagcgggtgtttgaaggGatggaagaacacaatttagtgtcctggaacgctatgttaactggttatgtcagatccatggatctgactagtgccttgcaattgttccagcaGAtgaggcaggagacgaaggagcttgatgctgttactctcggctgtgtgctcaatgcttgtactggGcttcttgatcttgaGaaaggtgaggaggtccacactttcgctttcaagAgtggtttTATTGGTTatcctttcctgaagaatgctctcttgaggatgtattccaaatgtggatgcttaaggagtgccgaacggcttcttctatttgagatgggatcagaaagagacagttactcctggaactcgcttatctcaggttatgaacgccactccatgagtgaagcagctctgcttgcactcaGtgagatgcattatgaggcgacacctaaccaatcgacgttcagctcagcACtggcagcctgtgccaacatatttctccttaatcacgggaagcagattcatgcatacatgatcaggaacggttatgtgattgatgatatactgcaaagtgcacttattgacatgtactccaagtgtagattgtttgattactccatgaggatctttgaggcaggaccatctcaagatgtcatcctctggaattcgatgatctttggatgtgcttataatggcaaaggcgagtatgggcttgaattgttctttgaaatgagcaagcaggggattacaccagactctgtcactttcctcggtgcactggtttcatgtatAAgcgaagggcacgtcgggttgggacggagttatttcacccagatgactgatgaatataacatcgtgcctcgcattgagcactatgaatgcatgattgagctgttgggcaagcatggctacatggttgagcttgaggattttataggtcacatgccattcgagccaacaactgcgatgtggttaaggatctttgactgctgcagggaatacgggaacagaaagttaggggagagggctgcccagtgcatcaatgacagcaatcccctgacaccagttcgatttgagattgctccagactacaaatactgtgatgatgacagcgatgagtcaatgtcagtgagctgggagggttaa
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| Protein seq | MAAAAAAASTASSISALVAAGRLFAALDALPPSYSSSQVPSAVYASLLRLATSHRLTDARKLFDAMPRRDGGSWNAIISAYSRGEEPTEAISLFSAMNSCGVRPKDVTLASVLGCCAECLDLHGARQLHGHIAKRDFQSNVILGTALVDVYGKCFALSEARRAFDGIPKPNDISWNVIIRRYLLAGMGDMAIDMFFRMVWAGVSPLVYTVSQALLACRDNGALEEGRRIHTFVLRHGYEQHVHVRSSVVDMYAKCGAIDLAQRLFDLAPVKDIVMSTSIVSGLASCGRITDAKRVFEGMEEHNLVSWNAMLTGYVRSMDLTSALQLFQQMRQETKELDAVTLGCVLNACTGLLDLEKGEEVHTFAFKSGFIGYPFLKNALLRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALLALSEMHYEATPNQSTFSSALAACANIFLLNHGKQIHAYMIRNGYVIDDILQSALIDMYSKCRLFDYSMRIFEAGPSQDVILWNSMIFGCAYNGKGEYGLELFFEMSKQGITPDSVTFLGALVSCISEGHVGLGRSYFTQMTDEYNIVPRIEHYECMIELLGKHGYMVELEDFIGHMPFEPTTAMWLRIFDCCREYGNRKLGERAAQCINDSNPLTPVRFEIAPDYKYCDDDSDESMSVSWEG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 3.136738 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0436800 | RBH | 1.546947 | 1.346999 | 0.422203 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35650 | RBH | 1.003797 | 0.869312 | 0.104286 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0436800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0014030 | RBH | 0.127867 | 2.381245 | 0.825146 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014880 | RBH | 0.029065 | 0.486611 | 0.862829 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014620 | RBH | 0.763698 | 0.0 | 2.834969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0014210 | RBH | 0.064713 | 0.080113 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014530 | RBH | 1.780356 | 1.919521 | 1.783777 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0339800 | RBH | 1.338113 | 2.066991 | 0.390436 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013450 | RBH | 0.328232 | 0.072776 | 0.331069 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0336500 | RBH | 1.3679395 | 3.022888 | 7.0096395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025610 | SBH | 1.105321 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014360 | RBH | 0.209081 | 0.0 | 0.404660 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014560 | RBH | 0.106961 | 0.629162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013620 | RBH | 0.210396 | 1.111950 | 0.351265 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013640 | RBH | 0.392702 | 0.0 | 0.627357 |
