Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsGoSa_04g0005510 | OGI:04033110 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:11265688-11268160 | ||||||||
Gene Symbol | DGS1, OsRPC53, RPC53, OsRPC4, RPC4, OsDGS1 | ||||||||||
DNA seq | ggagggcttaaatttgcacccaaggttcgtcctaagaaagctccaaagatcgtcccgaaaacgtatgtgattcgctccatattttcttccataatgctctgatatgtttcatgggagattatctattacaataggttatgtgctgtcgaatgagagagagagtttgtgtaattcaacagggagccggctgaggaaagcaaggatgaaaccgtagataaagagctgttgatgaagcttaagacatcgcaggtgtttatttctcatcttttttgtcatttaatactgtacataaaaagtttcttgttaattaagtcttgtttggtgtttgtgaaatcttgaattactttgccgatttgcagagcacagatccctttgtgagaaaatttaagactgagaaaaagggtaagactagttaattgctgttcctttccgtcctttccaatttattcatgatcatctggtaaatgtgtaatcttgtattattcgagcatgaccagtgtctatttccccctgttgttatcggtttatcagttaacttgtcttgccaaatatgcatgtcctcagaggttttaaattttcaacctgcaactgcaatctatgtagttaagaatagtgaaggctgtgaattgagcatgcatgactgatttttcattgctcaatggatttttcctgattcagctggccacatgagtgtttttacttgtatgaccaatcttaatctactaggcaatgcatatcctttttttttcaaaaagaaaagaaaagaacttgtacaccgacccttgaactatatctgctgcacaattgcaagtggtttcttagttggtcaagtacaagtgtgtggttcggttgtatcagaggatgaaaatttgttgcaagcaaaacactggtctgttagaagagtatgatttgattttcatcctattctaagcagtataattgaatgcttaatgcattggaatgccctgagaaatgttatgcgcaaaggatgcatcaaaatagcatttcactgattcattccatgcctaatcattattttgtgtagtaaaaggtcccattaatgtacagagtatttctgatgatgttggccttctctcttgatttacatgcttacttgctactgatgtcgtgctttgttgtcatcgtagaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcaggtattaagatattatgtgtgtccaatgttttatctttagctgaaccatccacttggtagtcaagtgtatattgactttactgtatatatcatcaaactggatagtattgcaagcgttgcttgtcttttgtaaggacacataatctttattacttattcagctgtatggattactttgtttggatattgacaagctttgtttacatgcatattcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggtgagtaaataaagatatcaagttcacttatgtgggattccttctttccactccttatttacttgattcctcacaggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggagatcctggtatcttgttggtccttccagactaggtagaatcattttcttcaaccaaaccttatgtctcttctgttcataatccagaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatggtgtgtcctggtgtttaagttcaatgtttcatttctggtaactggagtgtagcttaaaagcaaatagaattgtactctgtgtagcatatgcatcctagccttttaacttttagacctgttaaagtggcgaaggcaagtccgttttgctgattgatgtattgacatttgacagcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtgagtatgaaaactctatgccccagcattctatctttatgttttccatggccccatgctatatcaaaactgaaacaaccgtgcaggtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
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CDS seq | atgaagcttaagacatcgcagagcacagatccctttgtgagaaaatttaagactgagaaaaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
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Protein seq | MKLKTSQSTDPFVRKFKTEKKEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKMEA |
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Function | DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot:Q5E9Z7] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsGoSa_04g0005510 | OsGoSa_04g0005510.01 | Chr04 | 11265688 | 11268160 | + | NAM | ||
CDS seq | atgaagcttaagacatcgcagagcacagatccctttgtgagaaaatttaagactgagaaaaaggaaatgcgtactcaagttgcatttggacaggggaactcgtcgtatgcaagatcatttcccatgcaaagttcagcagatggatcagcttcaaaattaccaaaagaatatgttgaaccatgggactatacccacagtgactatcctgttactctcccactgaggagaccgtattctggagatcctgaaattcttaatgaagaggagtttggagagtcttctgccaccggagcccaagatggtgaattaaccacagcagaagaacttggactaatgcatcggtcagacaaagcacagttgcttttcttccagatgcctgcatctcttccattaccaaagcagccagactcagtcgcagagacagataaaggcgatggggtggatgctgaacctacaagcacaagctctaaggagatgcatgcaggaacaaggccaccaaaagtccttggctctaagctcaaagaccttccagaaggtttcatggggaagatacttgtatataggagcggtaaagtgaagatgaagatcggagattcactctttgatgtctctccgggttcaaattgcatgtttgtccaggaggttgcggcaattaacgccagagaaaagcactgctgcaccttgggagagatcagcaagcgcgcgattgtaaccccggacatcgagcatctgctggattctttcgacaagatggaagcgtaa
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Protein seq | MKLKTSQSTDPFVRKFKTEKKEMRTQVAFGQGNSSYARSFPMQSSADGSASKLPKEYVEPWDYTHSDYPVTLPLRRPYSGDPEILNEEEFGESSATGAQDGELTTAEELGLMHRSDKAQLLFFQMPASLPLPKQPDSVAETDKGDGVDAEPTSTSSKEMHAGTRPPKVLGSKLKDLPEGFMGKILVYRSGKVKMKIGDSLFDVSPGSNCMFVQEVAAINAREKHCCTLGEISKRAIVTPDIEHLLDSFDKMEA
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0394500 | SBH | 2.753114 | 3.539967 | 6.915311 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32350 | SBH | 2.381084 | 2.348512 | 1.920179 |
Nipponbare | IRGSP 1.0 | RAP-db | Os04g0394500 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011630 | SBH | 0.000000 | 0.000000 | 0.000000 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012430 | SBH | 0.000000 | 4.125924 | 3.994825 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012130 | SBH | 0.450200 | 8.406710 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011790 | SBH | 0.000000 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005680 | SBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0155600 | SBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0010960 | SBH | 0.000000 | 0.000000 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0166900 | SBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005540 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005720 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005740 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005470 | RBH | 0.000000 | 0.000000 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005820 | SBH | 0.000000 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005620 | SBH | 0.000000 | 0.000000 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005650 | SBH | 0.0 | 0.0 | 0.0 |