Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0003460 | OGI:04019130 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:5818651-5821533 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacaccactctcatgatttagacttctttctaggacgccccctctttttcggcccagaccccttttgcatagattgtttccctttctttttcttctgtctcagaccctcatggtcatgcaagtcaaaatcccccaggttatcagaactctctttatctgcatcatccaactcatccctatcttcctccttcagaccctccatatactgatcattctccatttctaccacaggaacccccagaatcgcattattctcattgggggggaggaccccctgtcccccttcttccaaacttgctttttcagccatctgttgtaacctcttatctacatcaaaaatagcagcctgtgccaattcctagcgcaaatagcatctaagttgcatctcacttcctcagaattatcacccaaagaaattcccccagccctagcaatgttgataagataatcctgactaacagattgaaagattgcataagaatttttagatgacatacctgaggtcatgttcattttggacttcctaagctcagcttttagatgaactggtacctccttatccttcaccctagaactctgtctcttgaccaaactaacttgatttttcttgtgcctgactttctggaacttatcctccctgttctgtaactctacttcactttccagatcaagttgttcactgtcatcctcttcctctgccctcatcaactcaatatctgagtcagttgggatagcacatttctccccctcttcatcagtgaataatctaacaccccccaattttaaatccacatccattctttttagaaggtcaccacttttatccttgtcctgtgaaacttgctcaaacagttctggttgtgaaaaatccttagacttccatagcaccactgccttgtctgcctttttctccacagcagttgcttcaataagaacttcacccttagcagtgacccccacctcattctccacctgcagaattatggccttttgcaagttttcagagtttcttttaacagctggaggggtagattgagtctggctgacaatcctccctttgccatctgcatctttagcaggctcctttttctttggacttcctttgtcatctttccccccacctttctttcctcctggagggtaatcatcatccagatcatcagcatcatcatcatcattgtccccccccccaaaaatcaatagacccagtcccctctggatcaacctttgcctcccattttatcttatatccactgtcattgatatatattatgatagaatagttgatagcactagggtccaagcatcccacttttatcctaacaactccttcccccttcaaagattcctcatctacttctttaaattcacccacaatgtcagatattgctctaatgatttcctgctttttggcgaaacctggaagaccaaacacttaaacccagatcacaaagagctcatccacaacattgtcaatcatcttagattctattacactcgctttgatggatgaagtcttaaacacaaaccccctgaacttagtgacttgccttctagcatcttcactcgggaaatcaatcaagcaatctttactgctaatttgcttcacattagcatcctctaaattgtgcccctttctcagtcacacccaaattgtcgacattcaggctaaagaaaccctgctcaggtatgccataaccttttagctttactgctagtttgcccaaattagaactactccccccaacatgaacaggacaatcagatgaaatatgtccaggattcttacacacatagcacagaggaggtttctggcaattcacctgatgatgaccactttctccacagttgaaacacttgatctcttccttctgggaaggacctgatctcccttcctcccccagcttctcctttccacgaagagataatccataaaatgccattgacaagcgtccaagtcccagaaatgccatcgacaagtatgagttccaagaaatgccattgtacaaacgattttgtcccaaaaatgccatcgccgttagggttccgtccattccacgccgttaagttctataggatgaacagtgtatttaacggcgcggaatggacggaaccctaacggcgatggtatttttgggacaaaatattttgtacgatggcatttcttggaactcacacttgttgatggcatttctgggacttagatgcttgtcaatggcatttcatggattatctcttccatgaatcggacgccgatcccctccctcccaagcaccaccctccttgtttctgtctccttgccactgtctatttcacccccttctctcaacttcctgccaccttccatcctcacgctgttgttgctgccccatcaaccgattccgaagttcacgttcctccctctcctgcaaatttcgatttccccaattcccaccacccccctcctcttcgaacgctcttctcttattgggaacccattgatcaggacgttggaattgaggtttacgatccacacctcccttcgctacctcgaggaaggacctcccgtcagtgagcctcgccggagctctctagatccgcctcgccgtcgccctaaagcacacgacctctcgtctggtggctggaaaccctagatgaggactcagagaaccccgtttcggcacccacacccagctcgcaggcaaacttacctccttgatcgggctcgagagcagatcacgcatggaccatccatggcggattccacaagcccgaccactccagcccgcatgaacagtgcagggctctccttgggctaacccatgggtattccaacaccatttcccgctcatcaaaacgtctcgattacctcccctcttctgcgtcgccggcgagggaggtcat
More
|
||||||||||
| CDS seq | atgacctccctcgccggcgacgcagaagaggggagcgggaaatggtgttggaatacccatgggttagcccaaggagagccctgcactgttcatgcgggctggagtggtcgggcttgtggaatccgccatggatggtccatgcgtgatctgctctcgagcccgatcaaggaggtaagtttgcctgcgagctgggtgtgggtgccgaaacggggttctctgagtcctcatctagggtttccagccaccagacgagaggtcagagctccggcgaggctcactgacgggaggtccttcctcgaggtagcgaagggaggtgtggatcgtaaacctcaattccaacgtcctgatcaatgggttcccaataagagaagagcgttcgaagaggaggggggtggtgggaattggggaaatcgaaatttgcaggagagggaggaacgtgaacttcggaatcggttgatggggcagcaacaacagcgtgaggatggaaggtggcaggaagttgagagaaggggttctaatttgggcaaactagcagtaaagctaaaaggttatggcatacctgagcagggtttctttagcctgaatgtcgacaatttgggtgggcacaatttagaggatgctaatgtgaagcaaattagcagtaaagattgcttgattgatttcccgagtgaagatgctagaaggcaagtcactaagttcagggggtttgtgtttaagacttcatccatcaaagcgagtgtaatagaatctaagatgattgacaatgttgtggatgagctctttgtgatctgggaaatcattagagcaatatctgacattgtgggtgaatttaaagaagtagatgaggaatctttgaagggggaaggagttgttaggataaaaactcaatctacccctccagctgttaaaagaaactctgaaaacttgcaaaaggccataattctgcaggtggagaatgaggtgggggtcactgctaagggtgaagttcttattgaagcaactgctgtggagaaaaaggcagacaaggcagtggtgctatggaagtctaaggatttttcacaaccagaactgtttgagcaagtttcacaggacaaggataaaagtggtgaccttctaaaaagaatggatgtggatttaaaattggggggtgttagattattcactgatgaagagggggagaaatgtgctatcccaactgactcagatattgagttgatgagggcagaggaagaggatgacagtgaacaacttgatctggaaagtgaagtagagttacagaacagggaggataagttccagaaagtcaggcacaagaaaaatcaagttagtttggtcaagagacagagttctagggtgaaggataaggaggtaccagttcatctaaaagctgagcttaggaagtccaaaatgaacatgacctcaggtatgtcatctaaaaattcttatgcaatctttcaatctgttagtcaggattatcttatcaacattgctagggctgggggaatttctttgggtgataattctgaggaagaattggcacaggctgctatttttgatgtagataagaggttacaacagatggctgaaaaagcaagtttggaagaagggggacagggggtcctcccccccaatgagaataatgcgattctgggggttcctgtggtagaaatggagaatgatcagtatatggagggtctgaaggaggaagatagggatgagttggatgatgcagataaagagagttctgataacctgggggattttgacttgcatgaccatgagggtctgagacagaagaaaaagaaagggaaacaatctatgcaaaaggggtctgggccgaaaaagagggggcgtcctagaaagaagtctaaatcatga
More
|
||||||||||
| Protein seq | MTSLAGDAEEGSGKWCWNTHGLAQGEPCTVHAGWSGRACGIRHGWSMRDLLSSPIKEVSLPASWVWVPKRGSLSPHLGFPATRREVRAPARLTDGRSFLEVAKGGVDRKPQFQRPDQWVPNKRRAFEEEGGGGNWGNRNLQEREERELRNRLMGQQQQREDGRWQEVERRGSNLGKLAVKLKGYGIPEQGFFSLNVDNLGGHNLEDANVKQISSKDCLIDFPSEDARRQVTKFRGFVFKTSSIKASVIESKMIDNVVDELFVIWEIIRAISDIVGEFKEVDEESLKGEGVVRIKTQSTPPAVKRNSENLQKAIILQVENEVGVTAKGEVLIEATAVEKKADKAVVLWKSKDFSQPELFEQVSQDKDKSGDLLKRMDVDLKLGGVRLFTDEEGEKCAIPTDSDIELMRAEEEDDSEQLDLESEVELQNREDKFQKVRHKKNQVSLVKRQSSRVKDKEVPVHLKAELRKSKMNMTSGMSSKNSYAIFQSVSQDYLINIARAGGISLGDNSEEELAQAAIFDVDKRLQQMAEKASLEEGGQGVLPPNENNAILGVPVVEMENDQYMEGLKEEDRDELDDADKESSDNLGDFDLHDHEGLRQKKKKGKQSMQKGSGPKKRGRPRKKSKS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0003460 | OsGoSa_04g0003460.01 | Chr04 | 5818651 | 5821533 | - | NAM | ||
| CDS seq | atgacctccctcgccggcgacgcagaagaggggagcgggaaatggtgttggaatacccatgggttagcccaaggagagccctgcactgttcatgcgggctggagtggtcgggcttgtggaatccgccatggatggtccatgcgtgatctgctctcgagcccgatcaaggaggtaagtttgcctgcgagctgggtgtgggtgccgaaacggggttctctgagtcctcatctagggtttccagccaccagacgagaggtcagagctccggcgaggctcactgacgggaggtccttcctcgaggtagcgaagggaggtgtggatcgtaaacctcaattccaacgtcctgatcaatgggttcccaataagagaagagcgttcgaagaggaggggggtggtgggaattggggaaatcgaaatttgcaggagagggaggaacgtgaacttcggaatcggttgatggggcagcaacaacagcgtgaggatggaaggtggcaggaagttgagagaaggggttctaatttgggcaaactagcagtaaagctaaaaggttatggcatacctgagcagggtttctttagcctgaatgtcgacaatttgggtgggcacaatttagaggatgctaatgtgaagcaaattagcagtaaagattgcttgattgatttcccgagtgaagatgctagaaggcaagtcactaagttcagggggtttgtgtttaagacttcatccatcaaagcgagtgtaatagaatctaagatgattgacaatgttgtggatgagctctttgtgatctgggaaatcattagagcaatatctgacattgtgggtgaatttaaagaagtagatgaggaatctttgaagggggaaggagttgttaggataaaaactcaatctacccctccagctgttaaaagaaactctgaaaacttgcaaaaggccataattctgcaggtggagaatgaggtgggggtcactgctaagggtgaagttcttattgaagcaactgctgtggagaaaaaggcagacaaggcagtggtgctatggaagtctaaggatttttcacaaccagaactgtttgagcaagtttcacaggacaaggataaaagtggtgaccttctaaaaagaatggatgtggatttaaaattggggggtgttagattattcactgatgaagagggggagaaatgtgctatcccaactgactcagatattgagttgatgagggcagaggaagaggatgacagtgaacaacttgatctggaaagtgaagtagagttacagaacagggaggataagttccagaaagtcaggcacaagaaaaatcaagttagtttggtcaagagacagagttctagggtgaaggataaggaggtaccagttcatctaaaagctgagcttaggaagtccaaaatgaacatgacctcaggtatgtcatctaaaaattcttatgcaatctttcaatctgttagtcaggattatcttatcaacattgctagggctgggggaatttctttgggtgataattctgaggaagaattggcacaggctgctatttttgatgtagataagaggttacaacagatggctgaaaaagcaagtttggaagaagggggacagggggtcctcccccccaatgagaataatgcgattctgggggttcctgtggtagaaatggagaatgatcagtatatggagggtctgaaggaggaagatagggatgagttggatgatgcagataaagagagttctgataacctgggggattttgacttgcatgaccatgagggtctgagacagaagaaaaagaaagggaaacaatctatgcaaaaggggtctgggccgaaaaagagggggcgtcctagaaagaagtctaaatcatga
More
|
|||||||
| Protein seq | MTSLAGDAEEGSGKWCWNTHGLAQGEPCTVHAGWSGRACGIRHGWSMRDLLSSPIKEVSLPASWVWVPKRGSLSPHLGFPATRREVRAPARLTDGRSFLEVAKGGVDRKPQFQRPDQWVPNKRRAFEEEGGGGNWGNRNLQEREERELRNRLMGQQQQREDGRWQEVERRGSNLGKLAVKLKGYGIPEQGFFSLNVDNLGGHNLEDANVKQISSKDCLIDFPSEDARRQVTKFRGFVFKTSSIKASVIESKMIDNVVDELFVIWEIIRAISDIVGEFKEVDEESLKGEGVVRIKTQSTPPAVKRNSENLQKAIILQVENEVGVTAKGEVLIEATAVEKKADKAVVLWKSKDFSQPELFEQVSQDKDKSGDLLKRMDVDLKLGGVRLFTDEEGEKCAIPTDSDIELMRAEEEDDSEQLDLESEVELQNREDKFQKVRHKKNQVSLVKRQSSRVKDKEVPVHLKAELRKSKMNMTSGMSSKNSYAIFQSVSQDYLINIARAGGISLGDNSEEELAQAAIFDVDKRLQQMAEKASLEEGGQGVLPPNENNAILGVPVVEMENDQYMEGLKEEDRDELDDADKESSDNLGDFDLHDHEGLRQKKKKGKQSMQKGSGPKKRGRPRKKSKS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.344418 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0220501 | SBH | 0.000000 | 0.250626 | 0.746643 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0220501 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003390 | RBH | 0.0 | 0.0 | 0.130065 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003920 | RBH | 0.0 | 0.0 | 0.122450 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003520 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0087100 | RBH | 0.005568 | 0.105556 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003580 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0088400 | RBH | 0.012604 | 0.062219 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003360 | RBH | 0.0 | 0.108302 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003670 | RBH | 0.0 | 0.0 | 0.172657 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003520 | RBH | 0.0 | 0.0 | 0.0 |
