Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0002400 | OGI:04014110 | 14/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:4191508-4193791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgggagaaggatgggtgatggacatcatttggcatgcgttggtacttgcctggaacacaattggtgatgtttggagtggctggtcaatggagatcctgctcggcgccagcttcctgatgcagcttgtgctggccttctctgccgggttccgttggcgcggggactcccccacgctacgcaatgtcatctggctcttctacgtaggcggtgactatgtggcgacgcttgcactcggccacctctctgtaagtggcacatccggcaagcgtcgcctcgtcgcgttctgggcacccttcttcctgctgcacctcggcggcccGACAGCATCACCGCCTATGAGCTTGAGGACAACCAGCTGTCGGCGCGCTATGTGCTGGAGCTTGTACTGCGAGTCGCCGGAGCGGTGTACATCGTCTACAAGTCCATTTCCGGTAGCTGGGCCTTGGTGCCGGCAGCCTGGTTGATGCTTTTCGTCGGTGTGGCCAAGTACGCGGAGAAGACATTGGCGCTCCATCGTGCCAACCTTGCCAATGTTCAGAGCTCTGTGGAGAGGCAGCAGCAGCGCCACCGCACAGAAGGTGGCATCCGCCATCCCCCCAAGATCTCATTTGGGGCGGACGACGATGATAGTGCCCTTGTGATGAAAGCTCATGCCCTGTTCCACATCTGCAAGAACTCCATGGTGGACTCGTCAGTGGAGACGGAGTCGGACATCGACGGTGCTGCTGCTCAAACCAAAAAAACCCTGTTCGAACTTGCATGGAATCAGCTGCTCAGGGTGATGGAGATAGAACTCTCCCTCATGTATGACTTCCTCTACACCAAGGCCGCCATCATCCACACCTGGTACGGCTACTGCATCCGTGTGTTGTCACCACTGGCAACCGCTGTGTCGCTGGTTCTGGTCGAACTCAGCAACCAGGGTGGCCGCCACAAGCAATCGGACATCATCGTCACTCGTGTCCTGCTGGTGGCCACCTTCCTTCTTGAGTCAGCGTCGCTGCTCAGGGCGCTCAGCTCGACATGGACCGGCTTCTTGCTTCACAGCAAGCTGCCACCGGGTTGGATACGCCGTGAAGTCTTGTGCATGAGACGGTGGCATCGGTTCCATTATGTCATCATGTCCCTTGGCTGGCCCCcgccaaggcgcatgctcaccggcagtggttaggcaatatgtgggagctcagcatgtttcagatgattatctcccgggaagaagagcggtcagcatcaaagaggcaatatcagttgtgggacaaggaatatcagcgatactcggggaaattcccaatcccaaaagatgtcaaggaggcgatttttgagcatgtgaggcggaagttgattacaatgaggaacaagatgaaatggaaggtggagctaacaggagtgaccacatcagcatcaatgacagacgcggagcaaatggagaagatggaggccccgttgaggacgaagaggggccagcaggtgctgctggatcacaatctgtgggaactctggtggagtctcggcaatgagctccagctgggtatcctcacatggcacattgccacggagatctacctcttgaagtccagcatggccactgatgccaaggaaggcactgccaatgtaacacggaaggtgaatgcaatcaggaagctgtccaactacatgatgtacctccttgccgtgcggccggacatgctgccaggcctggtcacccgtaagctgatcgaattgacctgtgaggatttggcccgggtttggtcggaacatcaagcaaaatcaactgctgccgacgacgttgagtcgtcgtcttctccaagcttctgtgatgtttggttcttcgcggtgaggaaattcttccagccgcacaatcagtggcgagtttctaccagggtctgtcacggcatggaggagcttgctaatgatctcctcaattattgggttaaacgggacaatggtgctgcccttaacaaatatctttctcgcggaattgaactcgccgtgaaactgctcgacctggagaggaatgacaaggcggacatggtgcaggtgatcttggaggtgtgggtggacatgctgttctacgcgagctaccggtgcagcaaggagtcacacgccaagcagctgagccagggcggcgagctcaccaccatcgtgtggctcatggcagaacacgccggtctgttccttgtcaataaaaccagaaagggtgctgaagaagaaaacaggaagaacaggaaattggctaagcagcggcagctacaacgtctgatcgatgctctagactga
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| CDS seq | atggcgggagaaggatgggtgatggacatcatttggcatgcgttggtacttgcctggaacacaattggtgatgtttggagtggctggtcaatggagatcctgctcggcgccagcttcctgatgcagcttgtgctggccttctctgccgggttccgttggcgcggggactcccccacgctacgcaatgtcatctggctcttctacgtaggcgCTCATGCCCTGTTCCACATCTGCAAGAACTCCATGGTGGACTCGTCAGTGGAGACGGAGTCGGACATCGACGGTGCTGCTGCTCAAACCAAAAAAACCCTGTTCGAACTTGCATGGAATCAGCTGCTCAGGGTGATGGAGATAGAACTCTCCCTCATGTATGACTTCCTCTACACCAAGGCCGCCATCATCCACACCTGGTACGGCTACTGCATCCGTGTGTTGTCACCACTGGCAACCGCTGTGTCGCTGGTTCTGGTCGAACTCAGCAACCAGGGTGGCCGCCACAAGCAATCGGACATCATCGTCACTCGTGTCCTGCTGGTGGCCACCTTCCTTCTTGAGTCAGCGTCGCTGCTCAGGGCGCTCAGCTCGACATGGACCGGCTTCTTGCTTCACAGCAAGCTGCCACCGGGTTGGATACGCCGTGAAGTCTTGTGCATGAGACGGTGGCATCGGTTCCATTATGTCATCATGTCCCTTGGCTGGCCCCcgccaaggcgcatgctcaccggcagtgaagagcggtcagcatcaaagaggcaatatcagttgtgggacaaggaatatcagcgatactcggggaaattcccaatcccaaaagatgtcaaggaggcgatttttgagcatgtgaggcggaagttgattacaatgaggaacaagatgaaatggaaggtggagctaacaggagtgaccacatcagcatcaatgacagacgcggagcaaatggagaagatggaggccccgttgaggacgaagaggggccagcaggtgctgctggatcacaatctgtgggaactctggtggagtctcggcaatgagctccagctgggtatcctcacatggcacattgccacggagatctacctcttgaagtccagcatggccactgatgccaaggaaggcactgccaatgtaacacggaaggtgaatgcaatcaggaagctgtccaactacatgatgtacctccttgccgtgcggccggacatgctgccaggcctggtcacccgtaagctgatcgaattgacctgtgaggatttggcccgggtttggtcggaacatcaagcaaaatcaactgctgccgacgacgttgagtcgtcgtcttctccaagcttctgtgatgtttggttcttcgcggtgaggaaattcttccagccgcacaatcagtggcgagtttctaccagggtctgtcacggcatggaggagcttgctaatgatctcctcaattattgggttaaacgggacaatggtgctgcccttaacaaatatctttctcgcggaattgaactcgccgtgaaactgctcgacctggagaggaatgacaaggcggacatggtgcaggtgatcttggaggtgtgggtggacatgctgttctacgcgagctaccggtgcagcaaggagtcacacgccaagcagctgagccagggcggcgagctcaccaccatcgtgtggctcatggcagaacacgccggtctgttccttgtcaataaaaccagaaagggtgctgaagaagaaaacaggaagaacaggaaattggctaagcagcggcagctacaacgtctgatcgatgctctagactga
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| Protein seq | MAGEGWVMDIIWHALVLAWNTIGDVWSGWSMEILLGASFLMQLVLAFSAGFRWRGDSPTLRNVIWLFYVGAHALFHICKNSMVDSSVETESDIDGAAAQTKKTLFELAWNQLLRVMEIELSLMYDFLYTKAAIIHTWYGYCIRVLSPLATAVSLVLVELSNQGGRHKQSDIIVTRVLLVATFLLESASLLRALSSTWTGFLLHSKLPPGWIRREVLCMRRWHRFHYVIMSLGWPPPRRMLTGSEERSASKRQYQLWDKEYQRYSGKFPIPKDVKEAIFEHVRRKLITMRNKMKWKVELTGVTTSASMTDAEQMEKMEAPLRTKRGQQVLLDHNLWELWWSLGNELQLGILTWHIATEIYLLKSSMATDAKEGTANVTRKVNAIRKLSNYMMYLLAVRPDMLPGLVTRKLIELTCEDLARVWSEHQAKSTAADDVESSSSPSFCDVWFFAVRKFFQPHNQWRVSTRVCHGMEELANDLLNYWVKRDNGAALNKYLSRGIELAVKLLDLERNDKADMVQVILEVWVDMLFYASYRCSKESHAKQLSQGGELTTIVWLMAEHAGLFLVNKTRKGAEEENRKNRKLAKQRQLQRLIDALD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0002400 | OsGoSa_04g0002400.01 | Chr04 | 4191508 | 4193791 | + | NAM | ||
| CDS seq | atggcgggagaaggatgggtgatggacatcatttggcatgcgttggtacttgcctggaacacaattggtgatgtttggagtggctggtcaatggagatcctgctcggcgccagcttcctgatgcagcttgtgctggccttctctgccgggttccgttggcgcggggactcccccacgctacgcaatgtcatctggctcttctacgtaggcgCTCATGCCCTGTTCCACATCTGCAAGAACTCCATGGTGGACTCGTCAGTGGAGACGGAGTCGGACATCGACGGTGCTGCTGCTCAAACCAAAAAAACCCTGTTCGAACTTGCATGGAATCAGCTGCTCAGGGTGATGGAGATAGAACTCTCCCTCATGTATGACTTCCTCTACACCAAGGCCGCCATCATCCACACCTGGTACGGCTACTGCATCCGTGTGTTGTCACCACTGGCAACCGCTGTGTCGCTGGTTCTGGTCGAACTCAGCAACCAGGGTGGCCGCCACAAGCAATCGGACATCATCGTCACTCGTGTCCTGCTGGTGGCCACCTTCCTTCTTGAGTCAGCGTCGCTGCTCAGGGCGCTCAGCTCGACATGGACCGGCTTCTTGCTTCACAGCAAGCTGCCACCGGGTTGGATACGCCGTGAAGTCTTGTGCATGAGACGGTGGCATCGGTTCCATTATGTCATCATGTCCCTTGGCTGGCCCCcgccaaggcgcatgctcaccggcagtgaagagcggtcagcatcaaagaggcaatatcagttgtgggacaaggaatatcagcgatactcggggaaattcccaatcccaaaagatgtcaaggaggcgatttttgagcatgtgaggcggaagttgattacaatgaggaacaagatgaaatggaaggtggagctaacaggagtgaccacatcagcatcaatgacagacgcggagcaaatggagaagatggaggccccgttgaggacgaagaggggccagcaggtgctgctggatcacaatctgtgggaactctggtggagtctcggcaatgagctccagctgggtatcctcacatggcacattgccacggagatctacctcttgaagtccagcatggccactgatgccaaggaaggcactgccaatgtaacacggaaggtgaatgcaatcaggaagctgtccaactacatgatgtacctccttgccgtgcggccggacatgctgccaggcctggtcacccgtaagctgatcgaattgacctgtgaggatttggcccgggtttggtcggaacatcaagcaaaatcaactgctgccgacgacgttgagtcgtcgtcttctccaagcttctgtgatgtttggttcttcgcggtgaggaaattcttccagccgcacaatcagtggcgagtttctaccagggtctgtcacggcatggaggagcttgctaatgatctcctcaattattgggttaaacgggacaatggtgctgcccttaacaaatatctttctcgcggaattgaactcgccgtgaaactgctcgacctggagaggaatgacaaggcggacatggtgcaggtgatcttggaggtgtgggtggacatgctgttctacgcgagctaccggtgcagcaaggagtcacacgccaagcagctgagccagggcggcgagctcaccaccatcgtgtggctcatggcagaacacgccggtctgttccttgtcaataaaaccagaaagggtgctgaagaagaaaacaggaagaacaggaaattggctaagcagcggcagctacaacgtctgatcgatgctctagactga
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| Protein seq | MAGEGWVMDIIWHALVLAWNTIGDVWSGWSMEILLGASFLMQLVLAFSAGFRWRGDSPTLRNVIWLFYVGAHALFHICKNSMVDSSVETESDIDGAAAQTKKTLFELAWNQLLRVMEIELSLMYDFLYTKAAIIHTWYGYCIRVLSPLATAVSLVLVELSNQGGRHKQSDIIVTRVLLVATFLLESASLLRALSSTWTGFLLHSKLPPGWIRREVLCMRRWHRFHYVIMSLGWPPPRRMLTGSEERSASKRQYQLWDKEYQRYSGKFPIPKDVKEAIFEHVRRKLITMRNKMKWKVELTGVTTSASMTDAEQMEKMEAPLRTKRGQQVLLDHNLWELWWSLGNELQLGILTWHIATEIYLLKSSMATDAKEGTANVTRKVNAIRKLSNYMMYLLAVRPDMLPGLVTRKLIELTCEDLARVWSEHQAKSTAADDVESSSSPSFCDVWFFAVRKFFQPHNQWRVSTRVCHGMEELANDLLNYWVKRDNGAALNKYLSRGIELAVKLLDLERNDKADMVQVILEVWVDMLFYASYRCSKESHAKQLSQGGELTTIVWLMAEHAGLFLVNKTRKGAEEENRKNRKLAKQRQLQRLIDALD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 6.684279 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0163800 | RBH | 1.019264 | 0.614871 | 1.978794 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g08190 | SBH | 0.700436 | 0.340199 | 0.419029 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0163800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002280 | RBH | 0.0 | 0.0 | 0.937252 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002330 | RBH | 0.455620 | 0.000000 | 2.314983 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002500 | RBH | 0.038173 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002350 | RBH | 1.159287 | 0.000000 | 3.020170 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0068300 | SBH | 0 | 0.152379 | 0.0057235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002540 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0065900 | SBH | 0 | 0.126357 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002360 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002410 | SBH | 0.0 | 4.255384 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002440 | SBH | 0.0 | 0.000000 | 0.0 |
