Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0002170 | OGI:04011210 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:3400191-3407592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctgcatgctgggtgaaccagacgtccatgttcgtcaatgaatGggcgatccggatcgtggtgctgtgcagcttcgccgcccacctcgtcctcgcgctcctcgctggggtccgtcggcgcaaggccaccggcgtgcgggtgctcctcctatgggcggcgtaccagctgggcggcttcgccgggacgtacgctctcggcagcatgtccctcagccgcacgacgccgcagcagcagcagcagctggcgctctgggcgccgttcctgctcctgcacctcgctggccccgacaacatcaccgcctactccctcgacgacaccgccctcgccgggaggcaggtgctcaccgtcgcggtgcagatcgccggagcagcctatgtcctgtacaggcagatatacagcagcagcagcagcactgccggtggtggcgatggcggcagcggcttgatgtgggtctccgtcgtcatgttcgtcatcggcgttgctaagtacgtggagagggccgtggcgatgaggcaggctgacctgggaagcatgaggagctcaagcaagaagagcaagctagaaagaaggagatccttcagcgatgtcagggagctgggtaacgagcttgccttgctggttgcccacgacctgctctacatcaccaagggcgcctttgtcgatcatttggacgacgagcatcctcttgatcgtgatgccgtcagatcagagatatttcgccatggatggaaggagatgtgcgaggtggtcgagatggagctcttgttagctgctaatcacccgatcgaacactttgtgcgcacactgcacacgtccggcacggcaacagacaaaaaaagactggagaacacaggaagaaattcagaacagagaagcagagtatttcagagtttcagagaatcacgagagagaaggaatttgtgggacaattttctgggttctttcattcaactgaattgaaaaacttataaatggaaattttagctactgctacttatactccaataacAaaaaaaacgaatccaagcctacaatcacgccatcccacgatccggaactcctggatccaatgccgtgcaaaactcacgcccacaacgcacgcctgacgcggtcgtctactcctgcagctcgccacatctctcgtgcatgcataacaaactcaaaactgaattattcatccagccgttgcaactgccatcgcctggatcaccttGgggccagagctgaaataacagtcaacaaactccccgttaattctgctacggcccaaaatcacgaacacctaacaggtgccgtgctgtcgccaatctcgctgctggcaacccttttgttaacgcatccgcccgctgctcctcagtccggacgaattcaatctgaatcttcccactttcaacacactcacgaataaaatgataccgggtatcgatgtgcttacttctcccatgaaacacagggttcttcatgagtgcaattgctgatttgttatcaacatacagcttcaccggcctggcttctgcaccaatcatctcaatcaacaatcccctcagccacaaagcgtgacacgctactgcagtggctgccatgaactcagcctcacaggacgaaagtgccactgttttctgcttttgtgaactccacgagaccaaactgccgttgaagtaaaacgccatgccgctagtactccgactatcatcactgtcgccggctagatcactatctgtgaaaccagtaatctccactgcaccattgcctccagaaaacatgagtccacagttgattgtccccttgagatatctgagaatttgcttcaccgccttgaaatgcatcactgtcggtcgttccatgaatctgctcaccacgcctactgcataggacaaatccggccgagtatgcaacaagtaacgaagacaacctatcaatcgcctgtactccgtgggatcaactgtgcttccttcagcatctttgtgcaactgtgaacgatgttcaataggaattaaggtagaattgcaatctagcatcccaaactgggtcagaatcttccttgcataagcagcctgcttgatggcgatcccgtcagtgccttgcaacacttcaattcccaagtaataggtgagcagtccaagatcactcatctcaaactcccccatcatctgttgtttgaatgcagtgatctcgcttgggctttctcctgtcacgatcagatcatcaacatatactccaacaattatcccggcactccctgtacctctagtgtagactgcttgttcttgtgcacaCcggctgaaaccaagctccttcatgctccgatcaagccgtgtattccacgcccgtggcgcctgtctcagcccgtagagagctttgctcaatttgtacacaagatgttcctttcccttctcaacaaaaccttctggctgagagacatatacttcttcctcaaaatcaccattaaggaatgccgacttgacgtcaaggtgatgcacctgccaccttcgatcagctgcaactgcaagtatagctcgcaccgtgtccaaccttgcaaccggcgcaaacacttcatcaaaatccacaccttgccgctggacgtaccccttcgccaccagccgcgccttgtgtttgatcacctcaccggcagtgtttttctttagcttgaacacccacttgagccctattgccttgcgaccggctggcagcatgcacagcgaccacgtcctgttcttctcaatagcctccagttccttgttcattgcgttcacccacgccggttcgccggctgcttcacggtaggatgtcggctcctccatctctgcgagcagcgcttctgcgtcatcatcatcctccaccaggtccacccgaggtgcttcaagcatgatctccaccaagcttctgtaccgcaccggcccgtcgtcacttccggctatgcgcagtgacgcctgcacctcggcagagtgcgttgaggatgagccgagtgtaggcgtcctaggcaaggttggtgagaacctcgccgggcttgtcggaggcgttccccgttgttctgccacttctggctccttgctggctcgccttcctgccggcggcgcccggtaccacggtaccgagcctgcctgctctgccggcgccggctgctctgcgccgacgggttcttctacctcgaactcagtggaagtcacctctcctgcagcagcactccactgccaaggtgtgttttcatcaaaaacaacgtcacgacttacaatgatttgccgacgacgcggatcaaacagccgatgggccttgctcccttcttcaacgcccaggtacacgaacgggctccggtcatccagcttcttcaagtgcggtgcagtcaccttcgcgtgcgccatacacccgaacacccgcaggtggcccaggtgaggtttcttccccgtccatgcctcgaacggagtgcgatttcccatcgccttggtcggcagccgatttaggaggaatacggtgtgacgaactgcctcgccccacatcctgccgggcacggacatccccttgaggagagaccgcgccattgccatcaccgtcctattgcgacgctCcacgacgccattctgctgcggtgaatacggtgccgtcaggtggcgctcgatgacggctgcatcgcagacacgcgcgaactcgccggacaagaactcaccgccgcggtctgtccggagtgtcttgattgttcgtcctgccgtgttctccgccaacggcttgaacttctcgaaggccgcgagcgctttgtccttcgacttgatcacaaacaCccacatccaacgagaaaaatcatcaacgatcaacataaagtatcgattaccggcgaacgtcgatggagtgatcggcccacacagatccatgtggagcagctcgagcggcgcctctgctcgatagtttgccattcctgggaacggctgccgaaattgttttgccaccagacatgcttgacacagctggtttgggtggtggactgcgggcactcctgccgccatctccttgtccaccaatagcttcaatgcatggaaattcacgtgtccgagccgggcatgccacagccacgccgggtcatcgagactggccagcaggcacaccggtgacgccagctgcagctcgatgcggtacagccgatttgaggttcgccgcaccttcatcaccaatcgccaaggatttttgtcgaacacctcgaggtcatctccatccatcacgacacggtggccagtttcagttagctgccccaaactcaccatgttgcagcagaggctggggatgtagtagacgtcgtcgagcaACCactggtcaccgttcttgcatgagaaaaggatggatccctgccccattatctgcactgacgaggcgttgccgaacctgacctgccctgtcacagtctcgtccagttcccggaatttccgacgatctcctgacatatgattgctggcaccattgtccaggtaccacagatcaccagcagctgctcccttctctgccagcatcaggcgaggccacacacgctcctcgtgcacgaccagcccgcagagcgcgtcctggcgcggcgcgttctgcacaagctggcgcggcgtctcctctgtcacagcgagcaagaaagctgggccagcatcctcagtttgcgcaagatgagcttcagccttcttcttcttggggtgtggacactgcgtggagtagtggccaaactcctcacagttgaaacattttatgtggctcttgtcgcggccactgccgccaccaccagagctgccaccgctgctctgcgtcccgctgcgtccgcgacccctgccacgaccacgcccggcctggccgcggttcgccccctcaccagagggcttgttcctctgtggcgacgaggtttctCccccgcctttcttgaagcgcacctcccactcgtcctgagtgagcagaacttgcccgtcagcggtcactccgccggcggtcgacggctggatgaataattcagttttgagtttgttatgcatgcacgagagatgtggcgagctgcaggagtagacgaccgcgtcaggcgtgcgttgtgggcgtgagttttgcacggcattggatccaggagttccggatcgtgggatggcgcgattgtaggcttggattcgttttttctgttattggagtataagtagtagtagctaaaatttccatttgtaagtttttcaattcagttgaatgaaagaacccagaaaattgtcccacaaattccttctctctcgtgattctctgaaactctgaaatactctgcttctctgttctgaatttcttcctgtgttctccagtctttttttgtctgttgccgtgccggacgtgtgcagtgtgtgcacaaagtgttcgatcgggtgattagcagctaacaagtggtatcagagcttctcaggttgagggcggatctggcactatggcgttggttccagcgacggcggacccgtcgagggggagcccaggaagtgctttcctttacccacagctcacgtcaaccaactacactagttgggtaatacgtgtgcaggctatgatagaggatcaaggcgtatgggaagcaattgagccggcggccGgggtggctgtcgacccgaggaaggacaagaaggcgaagtctcatcttctccagtcgctgccggaggatctcttgatgcaggttgcaaagaaacgctcggcaaaggaggtttgggattgcctcaagacgagattcgtcggggcagatcgggtgtgcgatgcgcgcctgcagacactcaagggagagttcaccaacatggtgatggaggccGgggagacgctggaccagtacgccggccggatcaccacgatgggggtccggtactctgctctcggcgtgacgttgaacgacgccgccatggtgaagaagctgttcgacactgtcccagagaagtatgtcagcctcgtcgcagggattgagcaattttacgacgtcgacaccatgccgttcgaagaagcggtaggtcgcctcaaggtgtatgaagagcggatgcggaagaagaatcgtgtcaccggctgtcagtgccacttcgttgatgctgttttggttccacggtaaagaggggcagaGgagggctgacatcttcttcacctacatcttgatggccggcaccatcctcctcgatatcagatggcttctccgagctatggtgtcgacttggacctatgcgttcctgatcgatagaccatgttgctggcttcatcatggaataccagcaagatggcgggtgctccgtcgtttcatcctctctctcgatccgtgccggcttcttgggaaggagccaacctgcagctataggatgtggccaggaaccattgggcagtacaacttgtttcacgagtgcactcgtgacaggaggagctggatgttgatcagctcgctggtgaagaagcttgcatcggaggaggagtggatggagtacgaataccactactcaaggggcattcgtgtttcaccagatatcaggaaggtgttgttcgactgtatttgggagtatatgaagttagcatacccagttgtacaacctaaaatggagacagatgaaaagaGgaaaaagccatgctccgctcatgttgaaagcgttcgggaattagatgaagctttggcatttctcccagagtttcaagagtctgttcttatcttgcacattgCcacgagcgtcttctacggcctgtgcatcgaacctgatcaaaatgcggcatcattcaaacaactggaggcgatcaagacgttgtcagactacatggtgttcctcgtcgcagttcgccccggcatgctaccaggctcaagcttcgcagcctgtacaaagctacccagaaagctctagagaaaatatggagcgagcaaagacgttcctgcaactgcaagagaacgaaagagaggtgtcttgccgaaatcctgcgttgcctggagaagaagccaggtgaaagagtactgaagaatcatctctactgcaactggaggccaggctacagaacccggaacagggagccaggctttataagcaagctttacgactcgagtattattttgtcggatggagttaaactagccgaagtaatcctgagatggctaagtagtggttacagggacaacattctgtacatcaaatcagagggtaaatttcagccgatttttccggaattgatgaaaatcatgaaatgcaagatgtacgacgaccctacgtatgacaaaagattgagcaaactgctggaacacatcttcaaggaatgggtgcgtctcctgattaactcgtccgtcaaatgtacgagagattcgcatgccaagcagctgagccgtggtggtgagctcacgaccgtcgtttggatcctggttgaacatgctgccgtatttcacgttgaccgtgccagatttcctgcctaa
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| CDS seq | atggctgcatgctgggtgaaccagacgtccatgttcgtcaatgaatGggcgatccggatcgtggtgctgtgcagcttcgccgcccacctcgtcctcgcgctcctcgctggggtccgtcggcgcaaggccaccggcgtgcgggtgctcctcctatgggcggcgtaccagctgggcggcttcgccgggacgtacgctctcggcagcatgtccctcagccgcacgacgccgcagcagcagcagcagctggcgctctgggcgccgttcctgctcctgcacctcgctggccccgacaacatcaccgcctactccctcgacgacaccgccctcgccgggaggcaggtgctcaccgtcgcggtgcagatcgccggagcagcctatgtcctgtacaggcagatatacagcagcagcagcagcactgccggtggtggcgatggcggcagcggcttgatgtgggtctccgtcgtcatgttcgtcatcggcgttgctaagtacgtggagagggccgtggcgatgaggcaggctgacctgggaagcatgaggagctcaagcaagaagagcaagctagaaagaaggagatccttcagcgatgtcagggagctgggtaacgagcttgccttgctggttgcccacgacctgctctacatcaccaagggcgcctttgtcgatcatttggacgacgagcatcctcttgatcgtgatgccaGgagggctgacatcttcttcacctacatcttgatggccggcaccatcctcctcgatatcagatggcttctccgagctatggtgtcgacttggacctatgcgttcctgatcgatagaccatgttgctggcttcatcatggaataccagcaagatggcgggtgctccgtcgtttcatcctctctctcgatccgtgccggcttcttgggaaggagccaacctgcagctataggatgtggccaggaaccattgggcagtacaacttgtttcacgagtgcactcgtgacaggaggagctggatgttgatcagctcgctggtgaagaagcttgcatcggaggaggagtggatggagtacgaataccactactcaaggggcattcgtgtttcaccagatatcaggaaggtgttgttcgactgtatttgggagtatatgaagttagcatacccagttgtacaacctaaaatggagacagatgaaaagaGgaaaaagccatgctccgctcatgttgaaagcgttcgggaattagatgaagctttggcatttctcccagagtttcaagagtctgttcttatcttgcacattgCcacgagcgtcttctacggcctgtgcatcgaacctgatcaaaatgcggcatcattcaaacaactggaggcgatcaagacgttgtcagactacatggtgttcctcgtcgcagttcgccccggcatgctaccaggctcaagcttcgcagcctgtacaaagctacccagaaagctctag
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| Protein seq | MAACWVNQTSMFVNEWAIRIVVLCSFAAHLVLALLAGVRRRKATGVRVLLLWAAYQLGGFAGTYALGSMSLSRTTPQQQQQLALWAPFLLLHLAGPDNITAYSLDDTALAGRQVLTVAVQIAGAAYVLYRQIYSSSSSTAGGGDGGSGLMWVSVVMFVIGVAKYVERAVAMRQADLGSMRSSSKKSKLERRRSFSDVRELGNELALLVAHDLLYITKGAFVDHLDDEHPLDRDARRADIFFTYILMAGTILLDIRWLLRAMVSTWTYAFLIDRPCCWLHHGIPARWRVLRRFILSLDPCRLLGKEPTCSYRMWPGTIGQYNLFHECTRDRRSWMLISSLVKKLASEEEWMEYEYHYSRGIRVSPDIRKVLFDCIWEYMKLAYPVVQPKMETDEKRKKPCSAHVESVRELDEALAFLPEFQESVLILHIATSVFYGLCIEPDQNAASFKQLEAIKTLSDYMVFLVAVRPGMLPGSSFAACTKLPRKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0002170 | OsGoSa_04g0002170.01 | Chr04 | 3400191 | 3407035 | + | NAM | ||
| CDS seq | atggctgcatgctgggtgaaccagacgtccatgttcgtcaatgaatGggcgatccggatcgtggtgctgtgcagcttcgccgcccacctcgtcctcgcgctcctcgctggggtccgtcggcgcaaggccaccggcgtgcgggtgctcctcctatgggcggcgtaccagctgggcggcttcgccgggacgtacgctctcggcagcatgtccctcagccgcacgacgccgcagcagcagcagcagctggcgctctgggcgccgttcctgctcctgcacctcgctggccccgacaacatcaccgcctactccctcgacgacaccgccctcgccgggaggcaggtgctcaccgtcgcggtgcagatcgccggagcagcctatgtcctgtacaggcagatatacagcagcagcagcagcactgccggtggtggcgatggcggcagcggcttgatgtgggtctccgtcgtcatgttcgtcatcggcgttgctaagtacgtggagagggccgtggcgatgaggcaggctgacctgggaagcatgaggagctcaagcaagaagagcaagctagaaagaaggagatccttcagcgatgtcagggagctgggtaacgagcttgccttgctggttgcccacgacctgctctacatcaccaagggcgcctttgtcgatcatttggacgacgagcatcctcttgatcgtgatgccaGgagggctgacatcttcttcacctacatcttgatggccggcaccatcctcctcgatatcagatggcttctccgagctatggtgtcgacttggacctatgcgttcctgatcgatagaccatgttgctggcttcatcatggaataccagcaagatggcgggtgctccgtcgtttcatcctctctctcgatccgtgccggcttcttgggaaggagccaacctgcagctataggatgtggccaggaaccattgggcagtacaacttgtttcacgagtgcactcgtgacaggaggagctggatgttgatcagctcgctggtgaagaagcttgcatcggaggaggagtggatggagtacgaataccactactcaaggggcattcgtgtttcaccagatatcaggaaggtgttgttcgactgtatttgggagtatatgaagttagcatacccagttgtacaacctaaaatggagacagatgaaaagaGgaaaaagccatgctccgctcatgttgaaagcgttcgggaattagatgaagctttggcatttctcccagagtttcaagagtctgttcttatcttgcacattgCcacgagcgtcttctacggcctgtgcatcgaacctgatcaaaatgcggcatcattcaaacaactggaggcgatcaagacgttgtcagactacatggtgttcctcgtcgcagttcgccccggcatgctaccaggctcaagcttcgcagcctgtacaaagctacccagaaagctctag
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| Protein seq | MAACWVNQTSMFVNEWAIRIVVLCSFAAHLVLALLAGVRRRKATGVRVLLLWAAYQLGGFAGTYALGSMSLSRTTPQQQQQLALWAPFLLLHLAGPDNITAYSLDDTALAGRQVLTVAVQIAGAAYVLYRQIYSSSSSTAGGGDGGSGLMWVSVVMFVIGVAKYVERAVAMRQADLGSMRSSSKKSKLERRRSFSDVRELGNELALLVAHDLLYITKGAFVDHLDDEHPLDRDARRADIFFTYILMAGTILLDIRWLLRAMVSTWTYAFLIDRPCCWLHHGIPARWRVLRRFILSLDPCRLLGKEPTCSYRMWPGTIGQYNLFHECTRDRRSWMLISSLVKKLASEEEWMEYEYHYSRGIRVSPDIRKVLFDCIWEYMKLAYPVVQPKMETDEKRKKPCSAHVESVRELDEALAFLPEFQESVLILHIATSVFYGLCIEPDQNAASFKQLEAIKTLSDYMVFLVAVRPGMLPGSSFAACTKLPRKL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0002170 | OsGoSa_04g0002170.02 | Chr04 | 3407043 | 3407592 | + | NAM | ||
| CDS seq | atggagcgagcaaagacgttcctgcaactgcaagagaacgaaagagaggtgtcttgccgaaatcctgcgttgcctggagaagaagccagagtactgaagaatcatctctactgcaactggaggccaggctacagaacccggaacagggagccaggctttataagcaagctttacgactcgagtattattttgtcggatggagttaaactagccgaagtaatcctgagatggctaagtagtggttacagggacaacattctgtacatcaaatcagagggtaaatttcagccgatttttccggaattgatgaaaatcatgaaatgcaagatgtacgacgaccctacgtatgacaaaagattgagcaaactgctggaacacatcttcaaggaatgggtgcgtctcctgattaactcgtccgtcaaatgtacgagagattcgcatgccaagcagctgagccgtggtggtgagctcacgaccgtcgtttggatcctggttgaacatgctgccgtatttcacgttgaccgtgccagatttcctgcctaa
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| Protein seq | MERAKTFLQLQENEREVSCRNPALPGEEARVLKNHLYCNWRPGYRTRNREPGFISKLYDSSIILSDGVKLAEVILRWLSSGYRDNILYIKSEGKFQPIFPELMKIMKCKMYDDPTYDKRLSKLLEHIFKEWVRLLINSSVKCTRDSHAKQLSRGGELTTVVWILVEHAAVFHVDRARFPA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0150300 | SBH | 0.000000 | 0.202303 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g06050 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0150300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001900 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002170 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002050 | RBH | 0.0 | 0.0 | 0.327934 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002070 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0054100 | RBH | 0 | 0.0109245 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0055400 | SBH | 0.0197905 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002100 | SBH | 0.387877 | 5.118492 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002000 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002100 | RBH | 0.0 | 0.0 | 0.0 |
