Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_04g0000580 | OGI:04006480 | 1/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr04:772166-772612 | ||||||||
| Gene Symbol | PIC22, RGA3 | ||||||||||
| DNA seq | tcagacgttgcttcttgggcagttcagcgttgcttcctcaatgctttggacattgttaaggtcttttaagcaaagtcgtccatgtagattgttgagatacctcagctcttctatgttactcttgtctccttgccctttccttacaacaaattcgttcaactcctgaagagcagtgaggcgcccaatttctgggatcgttgccaagtgcttggtctccacatgaagatgtcgcaggttagtcaacatctttatgtcggcaggaagctctttgagagaactgcctggtggcaaaaccagagattggagaaacagcaggttggccgtcgctgggagtctctcagtgccagtgttcaatgctaggtagcggagatgagttagctcactgatggtggctgggagttgtgctgcttggaagcttgagacatcgagcacacggatcctcttcat
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| CDS seq | atgaagaggatccgtgtgctcgatgtctcaagcttccaagcagcacaactcccagccaccatcagtgagctaactcatctccgctacctagcattgaacactggcactgagagactcccagcgacggccaacctgctgtttctccaatctctggttttgccaccaggcagttctctcaaagagcttcctgccgacataaagatgttgactaacctgcgacatcttcatgtggagaccaagcacttggcaacgatcccagaaattgggcgcctcactgctcttcaggagttgaacgaatttgttgtaaggaaagggcaaggagacaagagtaacatagaagagctgaggtatctcaacaatctacatggacgactttgcttaaaagaccttaacaatgtccaaagcattgaggaagcaacgctgaactgcccaagaagcaacgtctga
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| Protein seq | MKRIRVLDVSSFQAAQLPATISELTHLRYLALNTGTERLPATANLLFLQSLVLPPGSSLKELPADIKMLTNLRHLHVETKHLATIPEIGRLTALQELNEFVVRKGQGDKSNIEELRYLNNLHGRLCLKDLNNVQSIEEATLNCPRSNV |
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| Function | Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_04g0000580 | OsGoSa_04g0000580.01 | Chr04 | 772166 | 772612 | - | NAM | ||
| CDS seq | atgaagaggatccgtgtgctcgatgtctcaagcttccaagcagcacaactcccagccaccatcagtgagctaactcatctccgctacctagcattgaacactggcactgagagactcccagcgacggccaacctgctgtttctccaatctctggttttgccaccaggcagttctctcaaagagcttcctgccgacataaagatgttgactaacctgcgacatcttcatgtggagaccaagcacttggcaacgatcccagaaattgggcgcctcactgctcttcaggagttgaacgaatttgttgtaaggaaagggcaaggagacaagagtaacatagaagagctgaggtatctcaacaatctacatggacgactttgcttaaaagaccttaacaatgtccaaagcattgaggaagcaacgctgaactgcccaagaagcaacgtctga
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| Protein seq | MKRIRVLDVSSFQAAQLPATISELTHLRYLALNTGTERLPATANLLFLQSLVLPPGSSLKELPADIKMLTNLRHLHVETKHLATIPEIGRLTALQELNEFVVRKGQGDKSNIEELRYLNNLHGRLCLKDLNNVQSIEEATLNCPRSNV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 14.125829 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0111900 | SBH | 1.532223 | 1.220000 | 2.098635 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02110 | SBH | 1.036551 | 0.815102 | 0.537016 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0111900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000570 | SBH | 0.985964 | 7.993555 | 4.514219 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000570 | SBH | 1.348011 | 6.205522 | 8.279403 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000640 | SBH | 0.266413 | 0.149444 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000560 | SBH | 6.325290 | 12.497247 | 15.568901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0008800 | SBH | 0.012389 | 11.695101 | 0.0112365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000580 | SBH | 0.285881 | 0.302037 | 0.955804 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0012700 | SBH | 5.705733 | 16.698941 | 12.295103 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008020 | SBH | 0.0 | 0.097886 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000580 | SBH | 0.212127 | 8.419293 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000590 | RBH | 8.402252 | 9.379689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000550 | SBH | 0.728421 | 1.353761 | 1.336951 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008540 | SBH | 0.0 | 2.071673 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000720 | SBH | 0.0 | 0.0 | 0.217777 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000550 | SBH | 1.858391 | 20.453176 | 9.299323 |
