Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0040670 | OGI:03098280 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:38233283-38238604 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggcgaaatgcaaggtttctgcctttctggtatttggagcaagactttttttgctccgagaatactgctcaaaactagtcgatagttggacctaaactatgctaacctttggtatgtcaaatgcacgtacgttagtctacaggctttgaaaaaaatggcctacctaaaacacaattacacaaactaaagcctgtggtagtgacagtctcctcaaggtaactgtctcttcacgaactcccgatatatcatatcgatgaattcatcattctgccagaagcaaatttcacccgtgagtaaaatttcttagttaagaatggagtgtgagcaaaattttggatacataagcgtttttgaggaaatgcattggaaaaacaaaccatgttagagaagtctaacgcaaaactatgcaagcaaaaaactatggttgacacttgacaccataaaatcatttagaggataaagcacaccagaatcatgtggacccagtaaaggttgagcgaaaatcggcgccaatttacacggctaaataaacaaaaggattcaagaacatacctgacaaagactcagtagcacatccttcagttggtctcttgtgatcactgggcggccataagacactcccgaggtaagaaatggggaagggttgggcggtggaaatggctgcagtaatggcatgccatatggtggtggaatggacgatgcagtcggtagggagaagggctggtgcaagggagcactttgaagctgctgaacggtaatGggaggatgaagaggagcagcagaacacaatgacgaagcagcatgagaagctgtctgcaaagatggcatcggaggaaagaacaacggatttgctagacttgtaggctggatggtagaagtgctactagatctatgagcatcatggggcatcacaggaactgatgaaatttgagaaggatgcagaccatgcaaagcaggagattgtggtggaatagcaagatgcgatgcatgagtaagtgaatgaatcatcccaacagatttatttgactgtactgcaggagattgtggtgggatatcaaaaGgtgatgcatgagtagatgaatgaatcatcccaacagatttgtttgaccttactgcaggagattgtggtggaatagcaagaggtgcctgagtagatgaatgaaccatcccgaaagatttatttgactgtattgcaggagattgtggtggaatagcatgaggtgacgcatgagtagatgaatgaaccatcccaacagatttgtttgactgtactgcacttgcttcgtccatggtagcaccaacacatgcagcaccctgatcaaagagttttcaatattcacacataaaatctattttctcaggaaaattgcaaaatgatcctagattgctaagcatcagataaatacgaacaaggtcaataagagatgtcaattttcctcacctttagcaaagccgacaagaaatcatacttcgcattatccagcaccatgatagatgacgttggctgttttagagtatcctcattcgaaggaacagcaggcactacttccggcttttcatactcactgaaaggagcaaaacaaaagagaatttcactataattgacagcctcagttcctcattgattttgggtaacattgttctgaatcgaagggatcaattcgacccaactagataccacagtgaatctgcatttccttcttgttccctacaatttactgaactaactcatttttcctttgaatcatccagtagcagttcacatggagcatcacctgctcaaaattttattcctgcaatttttaagcttgtgatctaaaaaggccctcatattgcaaactaggaaaaaactcttttcaactaggatattggtaaataacactcttcaatgatttttttttcttttaggaatgaattttgttcaggttagaattacattagatgagaaaacaactataataggtccgtacaacattgatctgtgagcaatgaccatatacgaaatagatatttaatcttaataaggaagtgatttctaaataacaaataatataatgtctgaagcaaataacaataattcattatcacctcatgtctaagcaattggtacaagttacatccacttgcaaaggtgaacaggaaagaaaatgcatgacagtttcaaatacctttcagttacagaaaccttggcctttggggacaccctggaaaatgccttctgtatcctgtaccattgcaaatgaggtgtatagttcagcaggcatggggggagaacacacagaagagttacaaaaaaatgatgccttgcccttcataatgttttgtattgccaagccagtggacgcaagcaacaaactaccagtcagtcagtagagtaagattttatatagaaatattatgaatattgactaaacaactgtgtgacttactacagccacaattttaaataacaaaacagcttgttcaaacttcaaagccaaaaacaaagacagctgaaagtatgagccggtagtggtttatcttgctacacattttgttatattagaaatcatgttttacatatttggcaccaaggcaccaaatttagttgtgatgtgacaagtgagacaactccttctaagagaaattctttcggagcagacctccagtattactgagatgcatgcttacagagaattggagagttaaaacttgaaaaactgaataacattatatacggaaactgcacaagatagcatgtactaaaggcctaaagtggtgcagtagtagggtggatagaacagcaggccattgcatgatcagagaaaacaacacagttcttatggatgccagatacacgggaagtatcatgcagcccagcaggcttacaacttgatggtttggcagcattgctttcctgaaagataccatgactcacagagcactgaaaacctcaacacgtctcctaaaaaccacattgctacactaggctttagtgggctttacagtgaatgataatagagaagggccatatcagtgtgcacataattgtaatttagcgggtcatatcagtgtattgataattgcaatatattagttcagtaactccagttttcgacaggcagataccttatcaaacatggaatgccaaatagaccaatataaaatcagttctcttgtttatgttgaaaaaacgcctaccctgagaagcaagacatctgaaacaagcctactaatgatctccacagatcaaaacaatgctattgatgaaatttagtgacatatgaaagagaaaatgattacctactgaaaagatatccaacttgttcacattcctgaggatcatagaaccaaattcctgtgatttcgtctgcagcattgtggtacatgatgtaagggacttgtacttgatattcaaaaccccccaagagatcttcggtcagattttctgttcataggaggaaatggggaggacagcataatctacataatcaatctccatactagcatacaaagtaagcagaaatcggaaaccacaaaatcacttaactaggatatggaagttagtgttttgagaccaaaagcatgattccgtaagatgaaagtgagtgagctagctttgtactgatgttacggccttacaggatgcaccaatttttaacaatttattcaagtccatacaagtgttttctatcatggatatgtgcttcaaaacaatacatagtttagtcgtccaagggactacaagcaaaaacatttgattacacactgatatggcataacagaaatgaacaggaagcattagtttcatcattttacattgtaattagagtagacagtgattcaaagaacagatagcttcgattttaggatgccttaggttcgggacttaaggttatatcagatgatactgccggagcatgccgatgtagatatattacctgtatttttacgattcatgacaataaactggaatctgggttgggtgttcctgaaagaagaaaattttggtgttaaaaaacaatgagcaattttagacaaccagcagatgcaaacacgtcagggttcacagacccaaaagttaagggacttctggccttaagtattacttattaaacatagagtgtcaatagtagtgggtgacaaaaattgtcagcacgatacttgcataaaaattggatccttctgtgttgaatattgatatttataagaaaaatgttttcctgaacctgctgtccaattccaaagtattctatattagctgtatgttatgaataggcactccctctgattcagaaacatgcatcactgtatctacaggtaatcagcagaaagaaatgatccaatgtaggcatgtactattcagatcgactagaaattcgtaaaagcatctaaaaccaccaatactaatcagcttgtgaatataaacaccaaaataaaacctacccccaaaactagtgaatggtactgcaaatgccacatcaatatgcacatcaacatttaacaatgcaatgtcccatcttatagttacttgattcaattctttaggaatggcacgtgtatcagaaacaacaataagtaacgacagttcacactacccctggcaatcagattctaatactctttgttatgcaggaaattgctgaatcacacaacaaaacacaatataagaaccgaaccatgatgccgttattttccagaagttcattacgatgcccttttcagaaattccaaaaacatcggcattattgatcagatcggcagtgagcaactagttcatgggaatcatgcaaagcgtgtccgcagaaaaaaaaaatcccaaccacgctaatccacaacagcaacagaccataatcagctagaaccaaatccaccagctagggtgagcgcgaaacctcttgacgacgaagagcgacccctccacaggcctccggctctgcagaaaacgcgcgcgcgtgcgccgagagccacaaaaacgaatcagagtcggggctttggcgcggcgggaacgtagggttagcaccagagttatacccattggtggatgttgtcgtcgaagctgtagaggacgacgtgcgcggcgatgatgaggatgtcggcgacggcggggtcgaggcgacgcagcaccgtgaggttgagcgtccgcgtgccctcctggtcgctcgccaggtcgggcctcacattcagtctcctccacctcccgcctccgctcccgccgcgcgccatggccgcgcccgcccccctcgacctcctcgccggaaaccctagcggccgcgcggcgcgggattttttttccttctttccgcgctggattatggagccaggaggggaggttttgatcac
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| CDS seq | atggcgcgcggcgggagcggaggcgggaggtggaggagactgaatgtgaggcccgacctggcgagcgaccaggagggcacgcggacgctcaacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcgcacgtcgtcctctacagcttcgacgacaacatccaccaatggtttattgtcatgaatcgtaaaaatacagaaaatctgaccgaagatctcttggggggttttgaatatcaagtacaagtcccttacatcatgtaccacaatgctgcagacgaaatcacaggaatttggttctatgatcctcaggaatgtgaacaagttggatatcttttcagtaggatacagaaggcattttccagggtgtccccaaaggccaaggtttctgtaactgaaagtgagtatgaaaagccggaagtagtgcctgctgttccttcgaatgaggatactctaaaacagccaacgtcatctatcatggtgctggataatgcgaagtatgatttcttgtcggctttgctaaagggtgctgcatgtgttggtgctaccatggacgaagcaagtgcagtacagtcaaacaaatctgttgggatggttcattcatctactcatgcgtcacctcatgctattccaccacaatctcctgcaatacagtcaaataaatctttcgggatggttcattcatctactcaggcacctcttgctattccaccacaatctcctgcagtaaggtcaaacaaatctgttgggatgattcattcatctactcatgcatcacCttttgatatcccaccacaatctcctgcagtacagtcaaataaatctgttgggatgattcattcacttactcatgcatcgcatcttgctattccaccacaatctcctgctttgcatggtctgcatccttctcaaatttcatcagttcctgtgatgccccatgatgctcatagatctagtagcacttctaccatccagcctacaagtctagcaaatccgttgttctttcctccgatgccatctttgcagacagcttctcatgctgcttcgtcattgtgttctgctgctcctcttcatcctccCattaccgttcagcagcttcaaagtgctcccttgcaccagcccttctccctaccgactgcatcgtccattccaccaccatatggcatgccattactgcagccatttccaccgcccaacccttccccatttcttacctcgggagtgtcttatggccgcccagtgatcacaagagaccaactgaaggatgtgctactgagtctttgtcagaatgatgaattcatcgatatgatatatcgggagttcgtgaagagacagttaccttga
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| Protein seq | MARGGSGGGRWRRLNVRPDLASDQEGTRTLNLTVLRRLDPAVADILIIAAHVVLYSFDDNIHQWFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYLFSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIMVLDNAKYDFLSALLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPPQSPAIQSNKSFGMVHSSTQAPLAIPPQSPAVRSNKSVGMIHSSTHASPFDIPPQSPAVQSNKSVGMIHSLTHASHLAIPPQSPALHGLHPSQISSVPVMPHDAHRSSSTSTIQPTSLANPLFFPPMPSLQTASHAASSLCSAAPLHPPITVQQLQSAPLHQPFSLPTASSIPPPYGMPLLQPFPPPNPSPFLTSGVSYGRPVITRDQLKDVLLSLCQNDEFIDMIYREFVKRQLP |
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| Function | mRNA-decapping enzyme-like protein [UniProtKB/Swiss-Prot:Q9SJF3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0040670 | OsGoSa_03g0040670.01 | Chr03 | 38233283 | 38238604 | - | NAM | ||
| CDS seq | atggcgcgcggcgggagcggaggcgggaggtggaggagactgaatgtgaggcccgacctggcgagcgaccaggagggcacgcggacgctcaacctcacggtgctgcgtcgcctcgaccccgccgtcgccgacatcctcatcatcgccgcgcacgtcgtcctctacagcttcgacgacaacatccaccaatggtttattgtcatgaatcgtaaaaatacagaaaatctgaccgaagatctcttggggggttttgaatatcaagtacaagtcccttacatcatgtaccacaatgctgcagacgaaatcacaggaatttggttctatgatcctcaggaatgtgaacaagttggatatcttttcagtaggatacagaaggcattttccagggtgtccccaaaggccaaggtttctgtaactgaaagtgagtatgaaaagccggaagtagtgcctgctgttccttcgaatgaggatactctaaaacagccaacgtcatctatcatggtgctggataatgcgaagtatgatttcttgtcggctttgctaaagggtgctgcatgtgttggtgctaccatggacgaagcaagtgcagtacagtcaaacaaatctgttgggatggttcattcatctactcatgcgtcacctcatgctattccaccacaatctcctgcaatacagtcaaataaatctttcgggatggttcattcatctactcaggcacctcttgctattccaccacaatctcctgcagtaaggtcaaacaaatctgttgggatgattcattcatctactcatgcatcacCttttgatatcccaccacaatctcctgcagtacagtcaaataaatctgttgggatgattcattcacttactcatgcatcgcatcttgctattccaccacaatctcctgctttgcatggtctgcatccttctcaaatttcatcagttcctgtgatgccccatgatgctcatagatctagtagcacttctaccatccagcctacaagtctagcaaatccgttgttctttcctccgatgccatctttgcagacagcttctcatgctgcttcgtcattgtgttctgctgctcctcttcatcctccCattaccgttcagcagcttcaaagtgctcccttgcaccagcccttctccctaccgactgcatcgtccattccaccaccatatggcatgccattactgcagccatttccaccgcccaacccttccccatttcttacctcgggagtgtcttatggccgcccagtgatcacaagagaccaactgaaggatgtgctactgagtctttgtcagaatgatgaattcatcgatatgatatatcgggagttcgtgaagagacagttaccttga
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| Protein seq | MARGGSGGGRWRRLNVRPDLASDQEGTRTLNLTVLRRLDPAVADILIIAAHVVLYSFDDNIHQWFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYLFSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIMVLDNAKYDFLSALLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPPQSPAIQSNKSFGMVHSSTQAPLAIPPQSPAVRSNKSVGMIHSSTHASPFDIPPQSPAVQSNKSVGMIHSLTHASHLAIPPQSPALHGLHPSQISSVPVMPHDAHRSSSTSTIQPTSLANPLFFPPMPSLQTASHAASSLCSAAPLHPPITVQQLQSAPLHQPFSLPTASSIPPPYGMPLLQPFPPPNPSPFLTSGVSYGRPVITRDQLKDVLLSLCQNDEFIDMIYREFVKRQLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0837000 | RBH | 0.000000 | 0.000000 | 1.115197 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g62080 | RBH | 0.000000 | 0.000000 | 0.130291 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0837000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041260 | RBH | 0.000000 | 0.000000 | 0.560669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0040930 | RBH | 0.068561 | 0.000000 | 0.496649 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041000 | RBH | 0.000000 | 0.000000 | 2.337782 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041230 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040740 | RBH | 0.000000 | 0.0 | 3.801205 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0600500 | RBH | 0.1304525 | 0.4547495 | 1.658802 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040500 | RBH | 0.0 | 0.0 | 0.319750 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0602900 | RBH | 0.007102 | 0.361656 | 1.815961 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041070 | RBH | 0.0 | 0.071772 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0040980 | RBH | 0.107382 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0008880 | RBH | 4.896113 | 3.749555 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040730 | RBH | 0.000000 | 0.000000 | 0.539725 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040780 | RBH | 0.0 | 0.816348 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040560 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040270 | RBH | 0.0 | 0.0 | 0.399631 |
