Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0038600 | OGI:03094560 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:36953351-36957650 | ||||||||
| Gene Symbol | CDPK8, OsCDPK8, OsCPK8 | ||||||||||
| DNA seq | gactcactcatctctagaagaagcaaacaaacaccaactactcctccatctttctgtaccggattatcctaatcgcgtttactaaactccgctaaaatctcttgtattcccacaaaatttccccaaaaTtttttactaaaacttttttctcaaagatagaaaaaactatatatccttttggtttgcaaaggttttactaggttatttgcccccctcttctagaacgcatccagaattcgtggactctgcgacccaactcacacggcgaagcacacagaaatttttttcccaaatccatttattttcctctcttctctctctcgaatcgaatcgaatcgcctcgcctcctttgttgaattgaatccaagctcgattcgccgccgccgcacgccgccatgggcaactgctgcggcacgccggcgacggcggaggagggcgggaagaggaggaggagggggaagcagaagaaggcgaaccccttcaccgtcgcgtacaaccgcgcgccgtcgtcggcgggggcggcggcggggaggcccgggctgatggtgctgcgggacccgacggggcgggacctcggcgcgcggtacgagctcggcggcgagctGgggcgcggcgagttcgggatcacgtacctgtgcacggaggcggagacgggggacaggtacgcgtgcaagtcgatatcgaagcggaagctgcggacgccggtggacgtggaggacgtgcggcgcgaggtggagatcatgcgccacatgccgtcgcatccgaacatcgtcagcctccgcgccgcctacgaggacgaggacaacgtgcacctcgtcatggagctctgcgagggcggcgagctcttcgacaggatcgtcgcgcggggccactacaccgagcgcgccgccgccgccgtcacgcgcaccatcgtcgaggtggttcaggtgagcgcgtgtctccgtgtggactgtggactggacagagtcctgttctatttttttttaccttgttatttgcttaattaatttctagcatctgttgttatgttcgtaaataaatttggttcagatgagagaaattggtggttatgcctcaaataggataattgctactactagctgttatgttcatgaattggccatgatctggtcttttatgtagtgaggaattagaaatcatggtagcatccaactgggtatctggtaagattctgagcaaaatttaattgttgaaTttgctagggttcaacagtctgttaaaccttggtgcttgttagagtcacccatcattgtttagccagagtgataatgtattgacaaaggagtccatgtactagtgaagcgcattttgtactgcgagtatggtatattttggcagcagttctatttgtaaacgtataatcacgctgattctagaatgtgtgctagcagttcttcatcatgtgcttttcatattaagttcttgctatattggacttgcttttgtgacatctgacatgtattgttgtcctctctactgaacagatgtgccacaggcatggtgtcatgcaccgcgaccttaaaccagaaaacttcctatatgctaacaagaaggatagttctcctctgaaggcaattgattttgggctatctgtgttcttcaggcctggtatgctctgcagactgatgctcaagtacataacttcagaataaatggaactgaatctattgtacttggacaaaacaagtagaagaagagcaaatgggattgccccattgtactttgcttcaattcactgcaaatggagcttacttcataggcacatgcagcattcttttcagcaaaactgaatgcttgttgatttctaatgatggattcaatatgcaggtgagcggttcactgaaattgtaggcagtccatattacatggctccagaggttttaaagcgacactatggccctgaagttgatgtctggagtgcaggagtgatactttacatacttctttgcggtgtaccaccattttgggcaggtgtgttctttctcttgactagactgcatgtgttgcggggaagttatagaacaccattcttatcatattattgtggtgccatgcagaaaccgagcagggagtagcgcaggcaattatacgctctgtggtagatttcaaaagagaaccatggcccagggtatctgagccagctaaagatcttgttaagcggatgttggacccaaatcccatgacaaggcttactgcagaacaagtacttggtaagcatcgccaatcacctgtcctaacgcgtagcagcatacataatgctatctcactcctgctttagtggaatatatgaaggatatgtctgtactatatattatctatgatgtgattgatgagtaatgaactcacattattataagaagatttaaaattagcccagggctatttattattcagggaccatcatgcagggctaatctcagaaaagttctccgaaaaatggctagctgtacccttttttttactgtgtttttatccagaatgttttttaatggcaccatgattaacatttttcatggctcagacatttttttctcattgtttttctctgattttcgttgcatgtacagaacatccatggttacatgattctaaaaagatgcctgacattcctcttggtgatgctgtccgagctagactgcagcaatttgctgcgatgaacaagttaaagaagaaagcccttaaggtagcatttataatatgttagcaccaaaatagattattattcttattgaataaaaacttctacatagagatcacatataatttgcttcctaaattctaaacacgagatgtgcataaggatttttctccttttcttgtagttagcttatttgtgcttaattgcaggtcattgctgagcatttgtctgcagaggaagcagctgacataaaggacatgtttgataaaatggatgtgagcaagaatggccagctgacctttgaggatttcaaggctggcatacgtaaacttgggaatcagatgcctgattcagatcttaagatattgatggatgctgtgagttatcattaaaaatggtctaaactagaataaaaaggactggttctggttcttggcgatacatattgatgttcgctcattgctttgcaggctgatattgacaaaaatgggatcctggactatcaagaatttgttgctgtgtctatccatgtgaggaaaataggcaatgatgaacatatccagaaggctttctcatattttgaccaaaataagagtggttacatagaaattgaagagcttagagaggccttggttgatgaaatagatggcaatgatgaagacattattaatagcatcatccgtgatgtagatacagacaaggtcagcttaatctttccttagcaggccattatattgcatgacattgttcttggtatctatgcaatgacttcaattatataaaagttataagcccacagctagtgaaatctatgaatatcatttgctagaagctgaatagtgccacatacttgattacctggtagccagggttcaaatgtttctacctttggctgcaaggcagggtttatttaattaaagggttggtgaatgttatcattgacctatactatcatataataagttgtaaccggatggacaaggatagtctaattagacgacataaaacaaatgacataacaaacaaacaactggggtaggcttactggagatgattctagtgcaattgttagttgaaagtaacattagcaaagtatgacctgttcaaattccgtgtgattgaacttgtcgatatggtcatcctaacaacaatgcaatgttttcttttcatttattcttttctcaggatgggaaaataagctacgacgagtttgccgtcatgatgaaggccggcactgactggaggaaggcatctaggcagtactcaagacaaaggttcagtaacctcagtctgaagcttcaaaaggacggatccatcagtgacgacacgcaatagactggacagagaaaaaaactacgcttacgttttttctttgctgtgtgctggctgttacattattttttcacacagtaacttagtggctttgtatagatagcatttgtggttttgtgcttaccagcagcgattatatttgtcagtcaggcggcagatatgtatgtacccaaaagagggcgggatggggaagcagatggtgtgcttacagtttactagaccagaattgttggtacaattgtttgtagttttgtacgtaccataatacaagcggcgtgaaattctcaactcgttcatcctgttggcatc
More
|
||||||||||
| CDS seq | atgggcaactgctgcggcacgccggcgacggcggaggagggcgggaagaggaggaggagggggaagcagaagaaggcgaaccccttcaccgtcgcgtacaaccgcgcgccgtcgtcggcgggggcggcggcggggaggcccgggctgatggtgctgcgggacccgacggggcgggacctcggcgcgcggtacgagctcggcggcgagctGgggcgcggcgagttcgggatcacgtacctgtgcacggaggcggagacgggggacaggtacgcgtgcaagtcgatatcgaagcggaagctgcggacgccggtggacgtggaggacgtgcggcgcgaggtggagatcatgcgccacatgccgtcgcatccgaacatcgtcagcctccgcgccgcctacgaggacgaggacaacgtgcacctcgtcatggagctctgcgagggcggcgagctcttcgacaggatcgtcgcgcggggccactacaccgagcgcgccgccgccgccgtcacgcgcaccatcgtcgaggtggttcagatgtgccacaggcatggtgtcatgcaccgcgaccttaaaccagaaaacttcctatatgctaacaagaaggatagttctcctctgaaggcaattgattttgggctatctgtgttcttcaggcctggtgagcggttcactgaaattgtaggcagtccatattacatggctccagaggttttaaagcgacactatggccctgaagttgatgtctggagtgcaggagtgatactttacatacttctttgcggtgtaccaccattttgggcagaaaccgagcagggagtagcgcaggcaattatacgctctgtggtagatttcaaaagagaaccatggcccagggtatctgagccagctaaagatcttgttaagcggatgttggacccaaatcccatgacaaggcttactgcagaacaagtacttgaacatccatggttacatgattctaaaaagatgcctgacattcctcttggtgatgctgtccgagctagactgcagcaatttgctgcgatgaacaagttaaagaagaaagcccttaaggtcattgctgagcatttgtctgcagaggaagcagctgacataaaggacatgtttgataaaatggatgtgagcaagaatggccagctgacctttgaggatttcaaggctggcatacgtaaacttgggaatcagatgcctgattcagatcttaagatattgatggatgctgctgatattgacaaaaatgggatcctggactatcaagaatttgttgctgtgtctatccatgtgaggaaaataggcaatgatgaacatatccagaaggctttctcatattttgaccaaaataagagtggttacatagaaattgaagagcttagagaggccttggttgatgaaatagatggcaatgatgaagacattattaatagcatcatccgtgatgtagatacagacaaggatgggaaaataagctacgacgagtttgccgtcatgatgaaggccggcactgactggaggaaggcatctaggcagtactcaagacaaaggttcagtaacctcagtctgaagcttcaaaaggacggatccatcagtgacgacacgcaatag
More
|
||||||||||
| Protein seq | MGNCCGTPATAEEGGKRRRRGKQKKANPFTVAYNRAPSSAGAAAGRPGLMVLRDPTGRDLGARYELGGELGRGEFGITYLCTEAETGDRYACKSISKRKLRTPVDVEDVRREVEIMRHMPSHPNIVSLRAAYEDEDNVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQMCHRHGVMHRDLKPENFLYANKKDSSPLKAIDFGLSVFFRPGERFTEIVGSPYYMAPEVLKRHYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWPRVSEPAKDLVKRMLDPNPMTRLTAEQVLEHPWLHDSKKMPDIPLGDAVRARLQQFAAMNKLKKKALKVIAEHLSAEEAADIKDMFDKMDVSKNGQLTFEDFKAGIRKLGNQMPDSDLKILMDAADIDKNGILDYQEFVAVSIHVRKIGNDEHIQKAFSYFDQNKSGYIEIEELREALVDEIDGNDEDIINSIIRDVDTDKDGKISYDEFAVMMKAGTDWRKASRQYSRQRFSNLSLKLQKDGSISDDTQ |
||||||||||
| Function | Calcium-dependent protein kinase 8 [UniProtKB/Swiss-Prot:Q75GE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0038600 | OsGoSa_03g0038600.01 | Chr03 | 36953351 | 36957650 | + | NAM | ||
| CDS seq | atgggcaactgctgcggcacgccggcgacggcggaggagggcgggaagaggaggaggagggggaagcagaagaaggcgaaccccttcaccgtcgcgtacaaccgcgcgccgtcgtcggcgggggcggcggcggggaggcccgggctgatggtgctgcgggacccgacggggcgggacctcggcgcgcggtacgagctcggcggcgagctGgggcgcggcgagttcgggatcacgtacctgtgcacggaggcggagacgggggacaggtacgcgtgcaagtcgatatcgaagcggaagctgcggacgccggtggacgtggaggacgtgcggcgcgaggtggagatcatgcgccacatgccgtcgcatccgaacatcgtcagcctccgcgccgcctacgaggacgaggacaacgtgcacctcgtcatggagctctgcgagggcggcgagctcttcgacaggatcgtcgcgcggggccactacaccgagcgcgccgccgccgccgtcacgcgcaccatcgtcgaggtggttcagatgtgccacaggcatggtgtcatgcaccgcgaccttaaaccagaaaacttcctatatgctaacaagaaggatagttctcctctgaaggcaattgattttgggctatctgtgttcttcaggcctggtgagcggttcactgaaattgtaggcagtccatattacatggctccagaggttttaaagcgacactatggccctgaagttgatgtctggagtgcaggagtgatactttacatacttctttgcggtgtaccaccattttgggcagaaaccgagcagggagtagcgcaggcaattatacgctctgtggtagatttcaaaagagaaccatggcccagggtatctgagccagctaaagatcttgttaagcggatgttggacccaaatcccatgacaaggcttactgcagaacaagtacttgaacatccatggttacatgattctaaaaagatgcctgacattcctcttggtgatgctgtccgagctagactgcagcaatttgctgcgatgaacaagttaaagaagaaagcccttaaggtcattgctgagcatttgtctgcagaggaagcagctgacataaaggacatgtttgataaaatggatgtgagcaagaatggccagctgacctttgaggatttcaaggctggcatacgtaaacttgggaatcagatgcctgattcagatcttaagatattgatggatgctgctgatattgacaaaaatgggatcctggactatcaagaatttgttgctgtgtctatccatgtgaggaaaataggcaatgatgaacatatccagaaggctttctcatattttgaccaaaataagagtggttacatagaaattgaagagcttagagaggccttggttgatgaaatagatggcaatgatgaagacattattaatagcatcatccgtgatgtagatacagacaaggatgggaaaataagctacgacgagtttgccgtcatgatgaaggccggcactgactggaggaaggcatctaggcagtactcaagacaaaggttcagtaacctcagtctgaagcttcaaaaggacggatccatcagtgacgacacgcaatag
More
|
|||||||
| Protein seq | MGNCCGTPATAEEGGKRRRRGKQKKANPFTVAYNRAPSSAGAAAGRPGLMVLRDPTGRDLGARYELGGELGRGEFGITYLCTEAETGDRYACKSISKRKLRTPVDVEDVRREVEIMRHMPSHPNIVSLRAAYEDEDNVHLVMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQMCHRHGVMHRDLKPENFLYANKKDSSPLKAIDFGLSVFFRPGERFTEIVGSPYYMAPEVLKRHYGPEVDVWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKREPWPRVSEPAKDLVKRMLDPNPMTRLTAEQVLEHPWLHDSKKMPDIPLGDAVRARLQQFAAMNKLKKKALKVIAEHLSAEEAADIKDMFDKMDVSKNGQLTFEDFKAGIRKLGNQMPDSDLKILMDAADIDKNGILDYQEFVAVSIHVRKIGNDEHIQKAFSYFDQNKSGYIEIEELREALVDEIDGNDEDIINSIIRDVDTDKDGKISYDEFAVMMKAGTDWRKASRQYSRQRFSNLSLKLQKDGSISDDTQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.120127 | 11.942332 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0808600 | RBH | 4.795917 | 4.009508 | 6.818598 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g59390 | RBH | 3.265995 | 2.641371 | 1.704506 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0808600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039090 | RBH | 1.368737 | 24.323870 | 8.175696 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0038760 | RBH | 0.674716 | 2.660822 | 2.694695 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0038820 | RBH | 1.752047 | 23.719481 | 7.341478 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039110 | RBH | 0.311523 | 0.279582 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0038670 | RBH | 11.318284 | 8.946092 | 21.300575 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0577200 | RBH | 9.7007625 | 18.652525 | 6.604109 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038430 | RBH | 0.695637 | 1.724185 | 1.252280 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0579700 | RBH | 12.2245065 | 16.635748 | 6.607231 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039010 | RBH | 0.158393 | 0.102886 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0038970 | RBH | 1.289351 | 11.820282 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0019720 | RBH | 6.761291 | 33.148022 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038640 | RBH | 1.482407 | 1.615389 | 1.801866 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0038690 | RBH | 0.279008 | 5.566040 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G038460 | RBH | 0.966725 | 3.149316 | 4.417534 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038230 | RBH | 2.114511 | 17.131697 | 9.507391 |
