Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0028640 | OGI:03074110 | 11/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:28928523-28930905 | ||||||||
| Gene Symbol | OsLP, PR-5, 14b, TLP, PR5, OsTLP, OsPR5 | ||||||||||
| DNA seq | gacagatcataagtgacaagatttatccatttattttcattatcccaaacaagtgattcactcagtgcgaggttttatttaccaccatatacaagtacaggaactaagatagttattactgtccctgtacgagaccaagctcatcatgggcagaagacgatctggtagtcggtgccggcggggcaggtgaaggtggtgccttggccgtcccgggcgtaggtgaccgtctccgggcacagcttcttgaagaactccgtgtccttggtcggcccgcacgtgctgttccccctgcacgggttgctgcacccggccttggcgcgcagctcgccggggcactgcagcgtgatctccgccgcgcaccgaggcccgccgcgggggcaccgccgcccgcccgccgccgccggcacgatggccattggcgcgttgaacccatccacgagcgagatgtcgaagtagtcgtccttgctcgcctggcccagcgagaactcggccaccgtgacgggcggcgcgccgacggccgcgcaccgcagcgtgccgccgcagtcgcccgtctggcactgccctaggctgccgccggagatgaagccgcagcccgtgcgcccccacacgcgcgcgcccttggtgcccgccggcacgtacacggcccagctctgccccgggtcgagctgattgccgtcgcccgacggcagcgccgccggccacacggtgtacccgcacttgttgacgatggtgaacgtcaccgcatcggcggcggcggcgagcaccacgacgaggaggaggaggtggacagaagagttggcgagggacgccattattggtgacgtgttagtgtttctgttgctcaaattgagctgagcaagaatgcaagctaggggtgtggatttttatagcggtccggctaatggataatgtggaataatggaattcaacttttgcagctttgcgtgtgcgaatttcgttacgaaatcccaagagagtttggtggggaaaccagctgatggtttgataggagtccagctggttgtattaatttggcagaatcgtctagaaatggatgtgaatgatttggtcaaatatcgtgccaagattttgcgtgataatataaagttgtactatcttaatttatatctgaattgtcaattgatcttgacttggatgatacaaaatccaaaaatatggtagggacaaattttactctatatattatccatcgctattatcctgaagatataaaatacagagctctgccaagaacaaagaccgttcaacccaggataagaaaggagctaggtcgatgaatcgtcgatcacattctgggttcaaaaatcctcgatcacagttcacaagcacggttcataaggtttggaacgaatagagaacgtgtcatccacgcatacaaaaaacgttgttcagttctcacttgtacatcgtagtgatgctaaagtgctaaactacccgtcaaacccccctggAaaaaataatagaatttgaacggattcgttcatgcctgtgtaattaaccaaactacaagtgaaaaaccacttcagttttgaatggtttactttattacagagtaacttttctcttcatgattctgatacaaactcgcataaaaagtatgcatgcttgtttattgtgtatacatctaaccaagatcacatcgatcagatgccagctaacaagtcatcgtccctcatgggcagaagacgacctggtagttggtgccggccgggcaagtgaaggtgctcgtctggtcgtccttggggtagctgtaggcgtccgggcagagccccttgaagaactgcgagtagttggtcgggccgcagttgttcgccgccgagccggtgcagcagtactggtcctgcttgaacaccgtgcacgcgttgttgcacccgccgggcgccctcagctcgctcgggcactgccccgccacgtccgcctcgcaccgcggcccgcccttggcgcaCccggcgccgtcgccggcggggaggaagtccatgggcacgttgaatccgtcgatgagggagatgtcgaagaagtcgaggttgctgaactggttcagcgcgaactccgccagcgtgttgggcggctgcccgtacgccgcgcaccgcagcacgccgccgcagtcgcccgtctggcaccgcccgttgccgctgccgtcgaagctgcagcccgtgcgcgcccacacgcgcccgCccgtcgtgccggccggcacgtcgatcacccactgctgccccgggtccagctgctgcccgccgccggacggcacggctgccgcccacacggtgatctggcacttgttggtgatggtgaacgtggcggcgttcgcggcggcggcgaggaggagaagagggaggaggcggaggatggcgggagctgccat
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| CDS seq | atggcagctcccgccatcctccgcctcctccctcttctcctcctcgccgccgccgcgaacgccgccacgttcaccatcaccaacaagtgccagatcaccgtgtgggcggcagccgtgccgtccggcggcgggcagcagctggacccggggcagcagtgggtgatcgacgtgccggccggcacgacggGcgggcgcgtgtgggcgcgcacgggctgcagcttcgacggcagcggcaacgggcggtgccagacgggcgactgcggcggcgtgctgcggtgcgcggcgtacgggcagccgcccaacacgctggcggagttcgcgctgaaccagttcagcaacctcgacttcttcgacatctccctcatcgacggattcaacgtgcccatggacttcctccccgccggcgacggcgccggGtgcgccaagggcgggccgcggtgcgaggcggacgtggcggggcagtgcccgagcgagctgagggcgcccggcgggtgcaacaacgcgtgcacggtgttcaagcaggaccagtactgctgcaccggctcggcggcgaacaactgcggcccgaccaactactcgcagttcttcaaggggctctgcccggacgcctacagctaccccaaggacgaccagacgagcaccttcacttgcccggccggcaccaactaccagctcaatttgagcaacagaaacactaacacgtcaccaataatggcgtccctcgccaactcttctgtccacctcctcctcctcgtcgtggtgctcgccgccgccgccgatgcggtgacgttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcgctgccgtcgggcgacggcaatcagctcgacccggggcagagctgggccgtgtacgtgccggcgggcaccaagggcgcgcgcgtgtgggggcgcacgggctgcggcttcatctccggcggcagcctagggcagtgccagacgggcgactgcggcggcacgctgcggtgcgcggccgtcggcgcgccgcccgtcacggtggccgagttctcgctgggccaggcgagcaaggacgactacttcgacatctcgctcgtggatgggttcaacgcgccaatggccatcgtgccggcggcggcgggcgggcggcggtgcccccgcggcgggcctcggtgcgcggcggagatcacgctgcagtgccccggcgagctgcgcgccaaggccgggtgcagcaacccgtgcagggggaacagcacgtgcgggccgaccaaggacacggagttcttcaagaagctgtgcccggagacggtcacctacgcccgggacggccaaggcaccaccttcacctgccccgccggcaccgactaccagatcgtcttctgcccatga
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| Protein seq | MAAPAILRLLPLLLLAAAANAATFTITNKCQITVWAAAVPSGGGQQLDPGQQWVIDVPAGTTGGRVWARTGCSFDGSGNGRCQTGDCGGVLRCAAYGQPPNTLAEFALNQFSNLDFFDISLIDGFNVPMDFLPAGDGAGCAKGGPRCEADVAGQCPSELRAPGGCNNACTVFKQDQYCCTGSAANNCGPTNYSQFFKGLCPDAYSYPKDDQTSTFTCPAGTNYQLNLSNRNTNTSPIMASLANSSVHLLLLVVVLAAAADAVTFTIVNKCGYTVWPAALPSGDGNQLDPGQSWAVYVPAGTKGARVWGRTGCGFISGGSLGQCQTGDCGGTLRCAAVGAPPVTVAEFSLGQASKDDYFDISLVDGFNAPMAIVPAAAGGRRCPRGGPRCAAEITLQCPGELRAKAGCSNPCRGNSTCGPTKDTEFFKKLCPETVTYARDGQGTTFTCPAGTDYQIVFCP |
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| Function | Zeamatin [UniProtKB/Swiss-Prot:P33679] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0028640 | OsGoSa_03g0028640.01 | Chr03 | 28928523 | 28930905 | - | NAM | ||
| CDS seq | atggcagctcccgccatcctccgcctcctccctcttctcctcctcgccgccgccgcgaacgccgccacgttcaccatcaccaacaagtgccagatcaccgtgtgggcggcagccgtgccgtccggcggcgggcagcagctggacccggggcagcagtgggtgatcgacgtgccggccggcacgacggGcgggcgcgtgtgggcgcgcacgggctgcagcttcgacggcagcggcaacgggcggtgccagacgggcgactgcggcggcgtgctgcggtgcgcggcgtacgggcagccgcccaacacgctggcggagttcgcgctgaaccagttcagcaacctcgacttcttcgacatctccctcatcgacggattcaacgtgcccatggacttcctccccgccggcgacggcgccggGtgcgccaagggcgggccgcggtgcgaggcggacgtggcggggcagtgcccgagcgagctgagggcgcccggcgggtgcaacaacgcgtgcacggtgttcaagcaggaccagtactgctgcaccggctcggcggcgaacaactgcggcccgaccaactactcgcagttcttcaaggggctctgcccggacgcctacagctaccccaaggacgaccagacgagcaccttcacttgcccggccggcaccaactaccagctcaatttgagcaacagaaacactaacacgtcaccaataatggcgtccctcgccaactcttctgtccacctcctcctcctcgtcgtggtgctcgccgccgccgccgatgcggtgacgttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcgctgccgtcgggcgacggcaatcagctcgacccggggcagagctgggccgtgtacgtgccggcgggcaccaagggcgcgcgcgtgtgggggcgcacgggctgcggcttcatctccggcggcagcctagggcagtgccagacgggcgactgcggcggcacgctgcggtgcgcggccgtcggcgcgccgcccgtcacggtggccgagttctcgctgggccaggcgagcaaggacgactacttcgacatctcgctcgtggatgggttcaacgcgccaatggccatcgtgccggcggcggcgggcgggcggcggtgcccccgcggcgggcctcggtgcgcggcggagatcacgctgcagtgccccggcgagctgcgcgccaaggccgggtgcagcaacccgtgcagggggaacagcacgtgcgggccgaccaaggacacggagttcttcaagaagctgtgcccggagacggtcacctacgcccgggacggccaaggcaccaccttcacctgccccgccggcaccgactaccagatcgtcttctgcccatga
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| Protein seq | MAAPAILRLLPLLLLAAAANAATFTITNKCQITVWAAAVPSGGGQQLDPGQQWVIDVPAGTTGGRVWARTGCSFDGSGNGRCQTGDCGGVLRCAAYGQPPNTLAEFALNQFSNLDFFDISLIDGFNVPMDFLPAGDGAGCAKGGPRCEADVAGQCPSELRAPGGCNNACTVFKQDQYCCTGSAANNCGPTNYSQFFKGLCPDAYSYPKDDQTSTFTCPAGTNYQLNLSNRNTNTSPIMASLANSSVHLLLLVVVLAAAADAVTFTIVNKCGYTVWPAALPSGDGNQLDPGQSWAVYVPAGTKGARVWGRTGCGFISGGSLGQCQTGDCGGTLRCAAVGAPPVTVAEFSLGQASKDDYFDISLVDGFNAPMAIVPAAAGGRRCPRGGPRCAAEITLQCPGELRAKAGCSNPCRGNSTCGPTKDTEFFKKLCPETVTYARDGQGTTFTCPAGTDYQIVFCP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0028640 | OsGoSa_03g0028640.02 | Chr03 | 28928560 | 28929379 | - | IsoSeq | ||
| CDS seq | atgggttcaacgcgccaatggccatcgtgccggcggcggcgggcgggcggcggtgcccccgcggcgggcctcggtgcgcggcggagatcacgctgcagtgccccggcgagctgcgcgccaaggccgggtgcagcaacccgtgcagggggaacagcacgtgcgggccgaccaaggacacggagttcttcaagaagctgtgcccggagacggtcacctacgcccgggacggccaaggcaccaccttcacctgccccgccggcaccgactaccagatcgtcttctgcccatgatgagcttggtctcgtacaggga
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| Protein seq | MGSTRQWPSCRRRRAGGGAPAAGLGARRRSRCSAPASCAPRPGAATRAGGTARAGRPRTRSSSRSCARRRSPTPGTAKAPPSPAPPAPTTRSSSAHDELGLVQG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.745682 | 113.847160 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0663500 | RBH | 8.673384 | 7.233532 | 5.470709 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46070 | RBH | 19.543270 | 16.820456 | 2.633747 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0663500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028960 | RBH | 0.407673 | 144.300323 | 3.735499 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028660 | RBH | 0.0 | 6.111347 | 7.469976 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028740 | RBH | 6.177154 | 80.596992 | 9.077213 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028840 | RBH | 0.169714 | 1.565283 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0028500 | RBH | 1.148088 | 60.875351 | 15.732471 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0451300 | RBH | 6.894785 | 7.059819 | 16.244072 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028200 | RBH | 0.122475 | 3.736986 | 0.764325 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0452000 | RBH | 3.0228905 | 9.1228495 | 0.204373 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028580 | RBH | 0.054396 | 0.361876 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028630 | RBH | 0.0 | 46.871475 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028560 | RBH | 0.0 | 17.584049 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0028410 | RBH | 0.217879 | 5.316409 | 3.299245 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028370 | RBH | 0.000000 | 14.492387 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G028340 | RBH | 0.000000 | 1.166060 | 3.096458 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0028360 | RBH | 0.0 | 72.671654 | 8.641653 |
