Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0020680 | OGI:03043240 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:17244468-17250529 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agaaccatatatacctgaatgaatcaggcatcatttgttttccactttcactcttttcatgtaagaaaaccagaatgtataaagcatcaccaccagggcaggggttgccattgttattcacaaacaaaaacagagtttggcagtccaaaggcatacttttacaggttacatgacaacggcttatcagtactacaaatcactgtgtagctgagcaaactgcaacatctgtaacttctgtagctgtcacaaaaaactactgacaaaaacatgcaagcatttttttttctttttcaccctagaatgtgtagtcaccggagtcgtcgtatcgtcgcgaaatgctctcgccaccactgaggactgaccccatgcttgacctctgcacgagccggactaaggactggacgacctccgacatcggtggcctgaattccggctcaggctgttgaaagttggagatgatcagagattagcaacagtgcagtgagattggggaaggaaggagaatagaattgctacaatggtggtagtatttatacctggacacagagcgcgattgcgtcggcgaatcgagagagggattttgcagggtacagtccttccagtgctggatctaccatctgatctaacgcatcgatgtcatgaagctgcggagaagcccatcggactagcgactgctgtggccatggttgggatctgcaatagtttcagacaacaattggtttctgttactgtaaggactcattgtcttctcaattcagtcatttcagaggaatttgagtgtagattcaagggaaatgttggtatggacagctgacttttcacctgtcaaatgctttcctgccagtcaggagctctagcatgacgactccaaaactgtacacatcactcttttgagagtactgtccagacatggtcacctcgggagctctatatcctgagttctcatctgattcctgaagtttccattatataaggatttatgaggagaaaaattatatcatatgaaggttgctttttcagaaagttttttgttaacatctgtacggctcacttcagattgcacaaagtaaaataaaagaaatacacagatgatgcttgaagttaaaaagaacaaaaatatccagctctgaaggcgttcatatcagactgctagaaactatgttctgaacttctgattgactaggtgctctatgtactgcagctatgttccataaccataattatcatacataataggatcatttctaaattagcagaacacttgaggaagatcttaatatgttattgttacttcagatgacctcaagatatcctccaattcacaaaaaactatgttagtgtttcttaaggttcagagcatgcagtctgtaaagttgtaacttgtaagtggacagagcaggctatcaaatatcaaatggtacattgttcagcactatcacctggagttcctggttgggaataagctctgcaaacccacaatctgaaacatgggggttaagctcattatccaacagtatgttagatgacttgaaattcttgtggatgatagacggtgagcaagtttcgtgcatatacctgaaaagaaaaatacatattcagttacagaacaaatgtaccagttgatgaatctttctcacttactctaatgcccttgcagatcctaatgcaatcttgacacggctattccaagacagtggtttgctgtatccatcagacaggtgaaggaagtcatgaagagaaccgtttctgtaaaattcatatgccagcaaatactgtccatgctccaagcagtagccgtcaagctctgagaggtttggatggtttaattttgaaatctttgctaccaaatcaataaagaaatcggatggtttgcttggaaaggcagatacattgattttcttcacagccagtacctggaaagtagaaattgacatgaatataaaatgatgaaaattaaaaaatataatcatagcatttgcaatgaagtgttgtttgaagttcctgtcctccatacgagtagattatagattttgacatacaggaatgaaactaccaatatgactacgctactacagcctatatgagcttaaggtgttcgattattattgtatatgcagctattttcttactaattactgtaaaagtaaaaggagatactatagaagtaaaaggattatcctttccaataaaaataaaaataaaaggattaaagaacagttgatcttgacatccatagaatgaactgaatgtacttttgcagatgatgcgtttttgcatttggaaacaaaatataagaaaatatcacagcttacagtgacaaaccttatgatctgactcatctgagatctctgctctgtaaacccggccaaaagagccttcaccgataagattgtcagcactgaagctctccgttgccatctgcaggtctgccacagtgtacgcagttgctctgatggaagaaaggtctacattctttgccaaaacaggcttgtttgtgagatcattttcgtcaaaggacttgtgcaaatcgattttcgatggcggtttcaggttcattgagacagtcttctgcaatccttcctttgcagttggtgatatgatgcttattgttctcagctctgaacatcaagaaatttgtttagaattcagaaattacttcaaaattaacagctcaaggacagtaatgctgaatagttgttctaggattcaaggttccagctaacttacgattgaattttcctgaagcaattggtctaagagtgagaggttcattcttctcaggatctcctccacgttgatgcctcgttgactttctcttgaacacaaagaatccaaccattgctccaagaaccaccaaagatatgacaatcccagcaacagccccacctcctatcttagaacttctgcctccactgtcaccgccactgccatcgccattgccaccgttatcaccattgcttccaattggtggatttctgttacggttacgaggatttctggtagaaggctgtcgcggcggggattgtgaagtagtggatggtggagatgatggtgcaggactgactggactgttgctaaaggagttcccacttatcctgaattacaatatccatcacataaatattggaaccgtgatagactaggttcacaattttggaatgaatttctgaaattttgggtcttacggcagcaggtctgtaccaatgcctctccagctcaaaattccgaatttatttaaatttaactaagaatatcaaattctacgaaaatctgagaaatgttttcattaggaatttggtcttcttttgttttttcattccaaagttgtgaaccctgtgatagactgacaaggtggcgaaaaaaaacttactgcagattacttatgccttttagcttatcaggaattgctccacttaattgattgttttgaacgttgctgcaagaggaagttgtcttggatcacaaggagatatagagatgaatattagtaggtgaacagtgtaccaacttacaggtcagttagagggagatcagataggacatctatggtaccggtaaaccgattatcctgcaaatgactgaagagggaaacatatcattttacgtagtacaagattttgtttgcttgtttcaacaagatatccatatcaaaggatatgaaaatatgtcctcacagcatggtcagacttgtcaagttgctgaagctgtctggcagagtgccagagaaggtgttgtcagagaggtccctacaagaattagtttcagtttaccaataatttgtcagtattaagcgtatcaagaaaatggttgtttagatataaaaataaaataacactcacaatgtagccaagttggtgagttggttgaacataacattgatgcttgaaagctgattatgtccaagatttctacatcaaggagagtgacatggtttggtcagatgcaatcagagaggcttggagaaggtggcaaattgtgatacgataaagtgacttacagatacttcagtgaggccatttgggaaatggagtaaggcaaagtcccagtgaagctattgttctcaagatttctgcaagtcagattatctgtcagaactaacagaatgaaaacaaggacaaaattgttcttccagtttccagtcaaaatcacaacttacagcctctcaagatttggagggagattataagggatatcacctcctccaagattgttattgctagcatcactacaaagcaacaaaaacaaaaacttggtcaaaattttcaaccatcatcagtaaagactgtaagtagtaaaaaccatctgaaatagatttcactaacagctcaaccagtgcagtcatgacgttcatgttgtaccccaaggtccccttgagccccataccgggtaattttctgcccacagttcatttacgaagacatgaaaacacatcagaacaattggcagttagcaaatgtctcatccctgaagcgtgcccactaagtgtcacctcacattgttatcacccttgatccagagcaagtgatcccaagccaagactggccacaagggtcgccgttctgcgccacccagtttgtcagctgcgagggcgagttcagacttgtgtagaacgtgtttagggcagtcactgaacatgaacccaaaaaaaagaaaagatattgtcaagtgaacttacacttggctggaacaatggaaggtttagagttgcctagtttaatataatttggtactaagaaaagtagtcagaatattagttgtatataactcccataatctcaaaaccccaaatttgcattaaaaaaacagcacttttaaaactataagtcaaactgaaacatactatacagagaacctaactttttagcaatccaatgagaaaaggctgcgttgatatgtaaaaattatggagccagtcatggaaggaagagtggagaaatgaataaaaagaagcataggcacatctttcctgcccggttatccggacaggacaaacgatggcaccagaatgatgatgacaaagtggagccaccctgccaaactaatggcatttgctatcggccttaaccttgaaatcacaatcaatcacagtatgatgaagccaaatatgagaaaatttgaccagttgaagtaagaaaagtcaaaaaaaagaaaaagaaaaagaagggaaaatagcttgaggaagtgaagatgccagcagcaacttagcaattaacaccatggtgactgattggttaaagaaacttgcagaacaattatacttaaatctggcatctgatcaccccccagaaccagaattataagctccttaattacagtataatggagatgtcccaaaagaagcagcaaacagaaagaaacagctaaataattacaagttcctgcttgtggctaagtggattcacaagcaatttccataggattcatcaaaagaaaaggttccactgcaaaagaaacatttctttctctaagaagtctgaccaagaaacagaaggggaggaaaggaagaaccaagagcagaaaatcccccattgatttctgaaacaagaacacagaaaactgaactgaacaaaacaaaacaagctggaaatgcagagttcttgagaaaccaaaccgaaaccgtgctcgagctgaagaaaaatggacgcaaatgcgagattaagaggagctaaccgtcgtctgagctagtgtcggcagtgacccccaagaacgctgtggccatgagcagcatcgccaccactccagtgaagcccaccgacgccatgcccgagcctgaagctgctctgaaccagctcgagctcggcttccccattgcggtaatgcttctctgcttcttggagaactcctccaggaaagaaggtgatggacagaaaataaaaaaaaaatcccccctttttgttcacttcctgctactatacacaacaaaagctcattctcctctctctctctctctctctctctctctctcactatatgtcagcgagcgagtggtgttttcttttttctcggagagctatatatttttctgttgccaaaaagcttatagctgtaggtttagggaaggt
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| CDS seq | atggggaagccgagctcgagctggttcagagcagcttcaggctcgggcatggcgtcggtgggcttcactggagtggtggcgatgctgctcatggccacagcgttcttgggggtcactgccgacactagctcagacgacgtgactgccctaaacacgttctacacaagtctgaactcgccctcgcagctgacaaactgggtggcgcagaacggcgacccttgtggccagtcttggcttgggatcacttgctctggatcaagggtgataacaataaaattacccggtatggggctcaaggggaccttggggtacaacatgaacgtcatgactgcactggttgagcttgatgctagcaataacaatcttggaggaggtgatatcccttataatctccctccaaatcttgagaggctaaatcttgagaacaatagcttcactgggactttgccttactccatttcccaaatggcctcactgaagtatctaaatcttggacataatcagctttcaagcatcaatgttatgttcaaccaactcaccaacttggctacattggacctctctgacaacaccttctctggcactctgccagacagcttcagcaacttgacaagtctgaccatgcttcatttgcaggataatcggtttaccggtaccatagatgtcctatctgatctccctctaactgacctcaacgttcaaaacaatcaattaagtggagcaattcctgataagctaaaaggcataagtaatctgcaaaatcctcgtaaccgtaacagaaatccaccaattggaagcaatggtgataacggtggcaatggcgatggcagtggcggtgacagtggaggcagaagttctaagataggaggtggggctgttgctgggattgtcatatctttggtggttcttggagcaatggttggattctttgtgttcaagagaaagtcaacgaggcatcaacgtggaggagatcctgagaagaatgaacctctcactcttagaccaattgcttcaggaaaattcaatcagctgagaacaataagcatcatatcaccaactgcaaaggaaggattgcagaagactgtctcaatgaacctgaaaccgccatcgaaaatcgatttgcacaagtcctttgacgaaaatgatctcacaaacaagcctgttttggcaaagaatgtagacctttcttccatcagagcaactgcgtacactgtggcagacctgcagatggcaacggagagcttcagtgctgacaatcttatcggtgaaggctcttttggccgggtttacagagcagagatctcagatgagtcagatcataaggtactggctgtgaagaaaatcaatgtatctgcctttccaagcaaaccatccgatttctttattgatttggtagcaaagatttcaaaattaaaccatccaaacctctcagagcttgacggctactgcttggagcatggacagtatttgctggcatatgaattttacagaaacggttctcttcatgacttccttcacctgtctgatggatacagcaaaccactgtcttggaatagccgtgtcaagattgcattaggatctgcaagggcattagagtatatgcacgaaacttgctcaccgtctatcatccacaagaatttcaagtcatctaacatactgttggataatgagcttaacccccatgtttcagattgtgggtttgcagagcttattcccaaccaggaactccaggaatcagatgagaactcaggatatagagctcccgaggtgaccatgtctggacagtactctcaaaagagtgatgtgtacagttttggagtcgtcatgctagagctcctgactggcaggaaagcatttgacagatcccaaccatggccacagcagtcgctagtccgatgggcttctccgcagcttcatgacatcgatgcgttagatcagatggtagatccagcactggaaggactgtaccctgcaaaatccctctctcgattcgccgacgcaatcgcgctctgtgtccagcctgagccggaattcaggccaccgatgtcggaggtcgtccagtccttagtccggctcgtgcagaggtcaagcatggggtcagtcctcagtggtggcgagagcatttcgcgacgatacgacgactccggtgactacacattctag
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| Protein seq | MGKPSSSWFRAASGSGMASVGFTGVVAMLLMATAFLGVTADTSSDDVTALNTFYTSLNSPSQLTNWVAQNGDPCGQSWLGITCSGSRVITIKLPGMGLKGTLGYNMNVMTALVELDASNNNLGGGDIPYNLPPNLERLNLENNSFTGTLPYSISQMASLKYLNLGHNQLSSINVMFNQLTNLATLDLSDNTFSGTLPDSFSNLTSLTMLHLQDNRFTGTIDVLSDLPLTDLNVQNNQLSGAIPDKLKGISNLQNPRNRNRNPPIGSNGDNGGNGDGSGGDSGGRSSKIGGGAVAGIVISLVVLGAMVGFFVFKRKSTRHQRGGDPEKNEPLTLRPIASGKFNQLRTISIISPTAKEGLQKTVSMNLKPPSKIDLHKSFDENDLTNKPVLAKNVDLSSIRATAYTVADLQMATESFSADNLIGEGSFGRVYRAEISDESDHKVLAVKKINVSAFPSKPSDFFIDLVAKISKLNHPNLSELDGYCLEHGQYLLAYEFYRNGSLHDFLHLSDGYSKPLSWNSRVKIALGSARALEYMHETCSPSIIHKNFKSSNILLDNELNPHVSDCGFAELIPNQELQESDENSGYRAPEVTMSGQYSQKSDVYSFGVVMLELLTGRKAFDRSQPWPQQSLVRWASPQLHDIDALDQMVDPALEGLYPAKSLSRFADAIALCVQPEPEFRPPMSEVVQSLVRLVQRSSMGSVLSGGESISRRYDDSGDYTF |
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| Function | Protein STRUBBELIG-RECEPTOR FAMILY 7 [UniProtKB/Swiss-Prot:Q9LUL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0020680 | OsGoSa_03g0020680.01 | Chr03 | 17244468 | 17250529 | - | NAM | ||
| CDS seq | atggggaagccgagctcgagctggttcagagcagcttcaggctcgggcatggcgtcggtgggcttcactggagtggtggcgatgctgctcatggccacagcgttcttgggggtcactgccgacactagctcagacgacgtgactgccctaaacacgttctacacaagtctgaactcgccctcgcagctgacaaactgggtggcgcagaacggcgacccttgtggccagtcttggcttgggatcacttgctctggatcaagggtgataacaataaaattacccggtatggggctcaaggggaccttggggtacaacatgaacgtcatgactgcactggttgagcttgatgctagcaataacaatcttggaggaggtgatatcccttataatctccctccaaatcttgagaggctaaatcttgagaacaatagcttcactgggactttgccttactccatttcccaaatggcctcactgaagtatctaaatcttggacataatcagctttcaagcatcaatgttatgttcaaccaactcaccaacttggctacattggacctctctgacaacaccttctctggcactctgccagacagcttcagcaacttgacaagtctgaccatgcttcatttgcaggataatcggtttaccggtaccatagatgtcctatctgatctccctctaactgacctcaacgttcaaaacaatcaattaagtggagcaattcctgataagctaaaaggcataagtaatctgcaaaatcctcgtaaccgtaacagaaatccaccaattggaagcaatggtgataacggtggcaatggcgatggcagtggcggtgacagtggaggcagaagttctaagataggaggtggggctgttgctgggattgtcatatctttggtggttcttggagcaatggttggattctttgtgttcaagagaaagtcaacgaggcatcaacgtggaggagatcctgagaagaatgaacctctcactcttagaccaattgcttcaggaaaattcaatcagctgagaacaataagcatcatatcaccaactgcaaaggaaggattgcagaagactgtctcaatgaacctgaaaccgccatcgaaaatcgatttgcacaagtcctttgacgaaaatgatctcacaaacaagcctgttttggcaaagaatgtagacctttcttccatcagagcaactgcgtacactgtggcagacctgcagatggcaacggagagcttcagtgctgacaatcttatcggtgaaggctcttttggccgggtttacagagcagagatctcagatgagtcagatcataaggtactggctgtgaagaaaatcaatgtatctgcctttccaagcaaaccatccgatttctttattgatttggtagcaaagatttcaaaattaaaccatccaaacctctcagagcttgacggctactgcttggagcatggacagtatttgctggcatatgaattttacagaaacggttctcttcatgacttccttcacctgtctgatggatacagcaaaccactgtcttggaatagccgtgtcaagattgcattaggatctgcaagggcattagagtatatgcacgaaacttgctcaccgtctatcatccacaagaatttcaagtcatctaacatactgttggataatgagcttaacccccatgtttcagattgtgggtttgcagagcttattcccaaccaggaactccaggaatcagatgagaactcaggatatagagctcccgaggtgaccatgtctggacagtactctcaaaagagtgatgtgtacagttttggagtcgtcatgctagagctcctgactggcaggaaagcatttgacagatcccaaccatggccacagcagtcgctagtccgatgggcttctccgcagcttcatgacatcgatgcgttagatcagatggtagatccagcactggaaggactgtaccctgcaaaatccctctctcgattcgccgacgcaatcgcgctctgtgtccagcctgagccggaattcaggccaccgatgtcggaggtcgtccagtccttagtccggctcgtgcagaggtcaagcatggggtcagtcctcagtggtggcgagagcatttcgcgacgatacgacgactccggtgactacacattctag
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| Protein seq | MGKPSSSWFRAASGSGMASVGFTGVVAMLLMATAFLGVTADTSSDDVTALNTFYTSLNSPSQLTNWVAQNGDPCGQSWLGITCSGSRVITIKLPGMGLKGTLGYNMNVMTALVELDASNNNLGGGDIPYNLPPNLERLNLENNSFTGTLPYSISQMASLKYLNLGHNQLSSINVMFNQLTNLATLDLSDNTFSGTLPDSFSNLTSLTMLHLQDNRFTGTIDVLSDLPLTDLNVQNNQLSGAIPDKLKGISNLQNPRNRNRNPPIGSNGDNGGNGDGSGGDSGGRSSKIGGGAVAGIVISLVVLGAMVGFFVFKRKSTRHQRGGDPEKNEPLTLRPIASGKFNQLRTISIISPTAKEGLQKTVSMNLKPPSKIDLHKSFDENDLTNKPVLAKNVDLSSIRATAYTVADLQMATESFSADNLIGEGSFGRVYRAEISDESDHKVLAVKKINVSAFPSKPSDFFIDLVAKISKLNHPNLSELDGYCLEHGQYLLAYEFYRNGSLHDFLHLSDGYSKPLSWNSRVKIALGSARALEYMHETCSPSIIHKNFKSSNILLDNELNPHVSDCGFAELIPNQELQESDENSGYRAPEVTMSGQYSQKSDVYSFGVVMLELLTGRKAFDRSQPWPQQSLVRWASPQLHDIDALDQMVDPALEGLYPAKSLSRFADAIALCVQPEPEFRPPMSEVVQSLVRLVQRSSMGSVLSGGESISRRYDDSGDYTF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 2.172331 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0397700 | RBH | 3.684311 | 1.420474 | 8.815412 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27990 | RBH | 1.825642 | 0.908518 | 2.191742 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0397700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020870 | RBH | 0.459321 | 14.281050 | 26.324804 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020740 | RBH | 0.704622 | 5.753380 | 6.300334 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020760 | RBH | 0.927698 | 15.055186 | 34.471134 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020760 | RBH | 0.113453 | 0.260607 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020590 | RBH | 0.000000 | 5.396091 | 51.967350 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0265500 | RBH | 13.0942975 | 6.089781 | 0.9812205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020360 | RBH | 0.000000 | 0.747992 | 2.314037 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0268000 | RBH | 8.2019025 | 2.13598 | 4.875886 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0020580 | RBH | 0.081510 | 0.042977 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020590 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023210 | RBH | 1.551350 | 11.241179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020590 | RBH | 0.482438 | 0.615027 | 3.003850 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020440 | RBH | 0.172632 | 4.392639 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020430 | RBH | 0.156431 | 2.621918 | 4.963098 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020280 | RBH | 0.000000 | 7.174734 | 20.620096 |
