Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0020530 | OGI:01033530 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:17132220-17134124 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtggtcgtgctcgccctcctctccaccggtctctccctctccttctcccgcgcggacctcgcggccgtcgtcgtcgccgagccgcggctgctctacgcaaaggccgacaccatcgccgccagcgctcggttgggtcatcccgtcagtcgtcgtcgccgagcccaccgccgccgacgtcgcccgagcccgccgccgccgctgtcgcccaagccgtctaccaccgccgtcgccgagccccccacagccgctcatcgacgccatcaaggaggccggcggcgaccacgtctggaggtgagggcagaggcggcgtcggccatggttgttgcaaacggcgttgtcggtggttgtaaacggcgctcatcccatccctccctcgttccttgaaccaaacaaaaaactgggatcatcctattctacaaaccaaacacccgaatggaatcatcccaatcctcaaatcagggatggtttcatcctatcccacctagtcccagaaccaaacacacgcttatattatgggacggtgagagtgtctgacagctagccaagtctgctctctatctctcagctagctagcccaagtctgctctctatctctcaagctctcacagcaggaggaaagtttgattttttttcactgacaaataggggtccatacgttagtgataggagtggtggaccactaccaatatttatttaaagtagaatagacaaatagggatccacgtgtcagtgataggagtggtggtgacagattcactgtcaccattactaccactatttaaagtagtatagatgtggactggtatcatagttatacgatattctcatgaaaatctatatatagtacactaaagtaggatttcaaaatttgttattaatcgattaattgatatttttaagatagaaatttgcgaccaagtgtcaaacaatgtgtaatattagttccttctcaagtttaaccataaaccatattcttgaaacaatgccttttaatttgttgggtgatttctataaaatcaacccataaaatcaaaattaagctagatgggaggtgcgtggttttaccactaccacaattaggcttcgttcgaaccaactgttctgctgggattttttgacggcatacaaaacgagataggacattagtatatggttaatcgagtatcaattattaaaaattttaagaatggatttattatttttaagaaacttatttataaaatttttttacatgggacacaccgtttagctgttaaaaaagtgtgatcgcggagaacgatgaaatagttgtttcgaatatagttgcctagaacttagtcttagaagccagggtggccaagggaaaaatacggatcatgaccttagggcaagggcaatatataatgtggatacacattttaaggtggaacctataaataattagccattgttatggtatgatgcacaatgtatatggggtgtgtttggaaggtcggtttgcggctgcggctgcagccgcacgttacattgatacttacagacccatggtctttaacatgggccccactataaaataaaggtataagatagctgccaacttttttgagatagtgggggagagagagagtaagtagtggagaaaaaaatattggtttattcactgtggctaattgtaatcttgaggtgcaccaaaTttttttttcctattgctaacttgcacaatatataaggtacacctcaacaatatatttattcattaaggttacttttagcacactatggttgcccttataccatcgaatatcaccttctgcaaaaatgtgacaaagcaaattaaatcatatcgaattgacagcatgcttccacgggcgtgtgcggctgccaagagcacaaaagagctcttgcacccttcttacttactga
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| CDS seq | atggtggtcgtgctcgccctcctctccaccggtctctccctctccttctcccgcgcggacctcgcggccgtcgtcgtcgccgagccgcggctgctctacgcaaaggccgacaccatcgccgccagcgctcggttggcatgcttccacgggcgtgtgcggctgccaagagcacaaaagagctcttgcacccttcttacttactga |
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| Protein seq | MVVVLALLSTGLSLSFSRADLAAVVVAEPRLLYAKADTIAASARLACFHGRVRLPRAQKSSCTLLTY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0020530 | OsGoSa_03g0020530.01 | Chr03 | 17132220 | 17134124 | + | NAM | ||
| CDS seq | atggtggtcgtgctcgccctcctctccaccggtctctccctctccttctcccgcgcggacctcgcggccgtcgtcgtcgccgagccgcggctgctctacgcaaaggccgacaccatcgccgccagcgctcggttggcatgcttccacgggcgtgtgcggctgccaagagcacaaaagagctcttgcacccttcttacttactga
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| Protein seq | MVVVLALLSTGLSLSFSRADLAAVVVAEPRLLYAKADTIAASARLACFHGRVRLPRAQKSSCTLLTY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g10960 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007900 | SBH | 0.000000 | 0.000000 | 1.625743 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007870 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007950 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013260 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013380 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0116700 | RBH | 0.013692 | 0.0357405 | 0.0188045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013300 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0114200 | RBH | 0 | 0.160775 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0042650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019420 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013460 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042670 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020290 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013230 | SBH | 0.0 | 0.0 | 0.0 |
