Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0016120 | OGI:03032000 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:12597165-12599435 | ||||||||
| Gene Symbol | EULD1B, OsEULD1b, EULD1b, Osr40c1, r40c1 | ||||||||||
| DNA seq | tcctcaaagattcaccagagcacctccgaacgagcaacgagcatcagacagcaatcaaatccttaatcctccaagacggattgagatcaaatgcagttgctattgtaactgcacaatagcaactgcactcaatcatggccatccgttttcagatccagtggctctagatgactgctacagtacaggtataatagtacatctctgctacagtaccacttcacatcctggccttccattctagatcatgtgatgcacatgtaactgcttaagttacagttacaataacaactgcacaggatcttgatcctcaaagacaaaccaaagccacttcaaaggatgcatattgatcgaactagacacatggctgataaatgataaagcagggtactcatcaaaaggtctgaaactccgaacatctgaagaacaagctgcaaggccaaacgccttcgagatagttcacggaaacgacacctctcctctcacccccattctgtcacaaaagcaggactcgagaaaacgactaaaagcattacacacggacacagacacaacaccatcaccactgatcatcgcacacgacttttattctagcaacaaaggcagagggcagcaggccacgggcgcaaactctccccactccacagatcacggcgacgaccaatgcagctccagcacaccgcatttctgcaaacataagcaacaaccagatcgcatcatcatatcagcctttttcttttcggcgagatcattagtactagtagcaagtttaacaattcaaaagatggcaggtaagctatcggccactctatgacgtccttgttgctgtcggttacgtgaaatcaatgtgcaaaaatttctactcctcatcaagaaagttgataatggtgctcgtaaacaagttgcagcgagcgatgttgggatgaggcagcttacaccaggggacgatcttccagcgctggttgtcgccctcgcaccacttccagagcgcgacggtggtgccgtcgcggacgccgccgtggtccttgtcgccgtggagggcgtcgaagttgaggtagatgttgttcaccatgcggatgcagcggaagccgtgcccgacgtcgcggctctccgtccacagcaccgactcgtcctggtatccggggttgtacggcaccagcttcacctgtttgatcggatcaaacaaacaagcagccatggcatttgttcatcacttttaacaggcaaatcaagaaggatagatcgatgtactagtagtgaggatggatgcttacagggtggccttcgccttgggagtgcttgatggcctcgccggtgaccctgttgacgagggcgaaggcggggtacccttcctcgtccttgatgctgttgctgtgcctcatgtccttgatccagtgctggtactcgtcgcgagggttggtgggggcgaggcagacggagccgccgcggacggtgacgctgaagccctcgtcggccttgcagaagatgcggacggtgggctcgttgccgccgcggggtgcgttggcgctgccgccggcgtaggcctcgtcgccccaggggaggatcttccagcactggttgtcgcccttggcccactcccagagcacgatggtggtgccgtcgtgcacgccgccgtggtccttgtcgccgtggaacgcgtcgaagttgaggcggatgttgttcagcatgcgaatgcagcggaagctcttgcccacgtcgccgctctccgtccacagcaccgactcgtccgggtactccgggttgaacggcgccagcttcacctgaaaccaccaccaccacgacgcacgcatcacacaaagagtgagtcagcaaaaccaacgccgacggcgacagcgccacggatcaagatggctcacggcacgcgcgtaccgggtggccctggccgagggagtgcttgatggcgaggccggtggccttgttgacgagcgcgaacgccgggttgccctcctcgtccttgatcttggcgctgaagcgcatgtccttgtaccagtgctggtgctcgtcgcgcgggttggtcggggcgaggacgacgttcccctcgcgcacggcgacgcagtaCcccCTCGTCGGCGCGGCAGAAGATCTTGAAGGTGGGCTGGTGCGCGCCGCCGCCGCCGCCGCCGTGGTGCTGGGGCGGCTGGTCTTGGCCATGGTGGCCGTGGTGCCCGAAGCCGAACATCTTGCTCGCTTCGGGAGGTTTTGGGGAGGGTTGTGTTGTGTGAGTGTGATGGATCAAACGTGAGACGAGGCGAT
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| CDS seq | ATGGCCAAGACCAGCCGCCCCAGCACCACGGCGGCGGCGGCGGCGGCGCGCACCAGCCCACCTTCAAGATCTTCTGCCGCGCCGACGAGgggGtactgcgtcgccgtgcgcgaggggaacgtcgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacccggcgttcgcgctcgtcaacaaggccaccggcctcgccatcaagcactccctcggccagggccacccggtgaagctggcgccgttcaacccggagtacccggacgagtcggtgctgtggacggagagcggcgacgtgggcaagagcttccgctgcattcgcatgctgaacaacatccgcctcaacttcgacgcgttccacggcgacaaggaccacggcggcgtgcacgacggcaccaccatcgtgctctgggagtgggccaagggcgacaaccagtgctggaagatcctcccctggggcgacgaggcctacgccggcggcagcgccaacgcaccccgcggcggcaacgagcccaccgtccgcatcttctgcaaggccgacgagggcttcagcgtcaccgtccgcggcggctccgtctgcctcgcccccaccaaccctcgcgacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaagggtaccccgccttcgccctcgtcaacagggtcaccggcgaggccatcaagcactcccaaggcgaaggccaccctgtaactggtgccgtacaaccccggataccaggacgagtcggtgctgtggacggagagccgcgacgtcgggcacggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccctccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgcgctctggaagtggtgcgagggcgacaaccagcgctggaagatcgtcccctggtaaatgcggtgtgctggagctgcattggtcgtcgccgtgatctgtggagtggggagagtttgcgcccgtggcctgctgccctctgcctttgttgctag
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| Protein seq | MAKTSRPSTTAAAAAARTSPPSRSSAAPTRGYCVAVREGNVVLAPTNPRDEHQHWYKDMRFSAKIKDEEGNPAFALVNKATGLAIKHSLGQGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQGEGHPVTGAVQPRIPGRVGAVDGEPRRRARLPLHPHGEQHLPQLRRPPRRQGPRRRPRRHHRRALEVVRGRQPALEDRPLVNAVCWSCIGRRRDLWSGESLRPWPAALCLCC |
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| Function | Ricin B-like lectin R40C1 [UniProtKB/Swiss-Prot:Q10M12] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0016120 | OsGoSa_03g0016120.01 | Chr03 | 12597165 | 12599435 | - | NAM | ||
| CDS seq | ATGGCCAAGACCAGCCGCCCCAGCACCACGGCGGCGGCGGCGGCGGCGCGCACCAGCCCACCTTCAAGATCTTCTGCCGCGCCGACGAGgggGtactgcgtcgccgtgcgcgaggggaacgtcgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacccggcgttcgcgctcgtcaacaaggccaccggcctcgccatcaagcactccctcggccagggccacccggtgaagctggcgccgttcaacccggagtacccggacgagtcggtgctgtggacggagagcggcgacgtgggcaagagcttccgctgcattcgcatgctgaacaacatccgcctcaacttcgacgcgttccacggcgacaaggaccacggcggcgtgcacgacggcaccaccatcgtgctctgggagtgggccaagggcgacaaccagtgctggaagatcctcccctggggcgacgaggcctacgccggcggcagcgccaacgcaccccgcggcggcaacgagcccaccgtccgcatcttctgcaaggccgacgagggcttcagcgtcaccgtccgcggcggctccgtctgcctcgcccccaccaaccctcgcgacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaagggtaccccgccttcgccctcgtcaacagggtcaccggcgaggccatcaagcactcccaaggcgaaggccaccctgtaactggtgccgtacaaccccggataccaggacgagtcggtgctgtggacggagagccgcgacgtcgggcacggcttccgctgcatccgcatggtgaacaacatctacctcaacttcgacgccctccacggcgacaaggaccacggcggcgtccgcgacggcaccaccgtcgcgctctggaagtggtgcgagggcgacaaccagcgctggaagatcgtcccctggtaaatgcggtgtgctggagctgcattggtcgtcgccgtgatctgtggagtggggagagtttgcgcccgtggcctgctgccctctgcctttgttgctag
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| Protein seq | MAKTSRPSTTAAAAAARTSPPSRSSAAPTRGYCVAVREGNVVLAPTNPRDEHQHWYKDMRFSAKIKDEEGNPAFALVNKATGLAIKHSLGQGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQGEGHPVTGAVQPRIPGRVGAVDGEPRRRARLPLHPHGEQHLPQLRRPPRRQGPRRRPRRHHRRALEVVRGRQPALEDRPLVNAVCWSCIGRRRDLWSGESLRPWPAALCLCC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0016120 | OsGoSa_03g0016120.02 | Chr03 | 12598369 | 12599435 | - | NAM | ||
| CDS seq | ATGGCCAAGACCAGCCGCCCCAGCACCACGGCGGCGGCGGCGGCGGCGCGCACCAGCCCACCTTCAAGATCTTCTGCCGCGCCGACGAGgggGtactgcgtcgccgtgcgcgaggggaacgtcgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacccggcgttcgcgctcgtcaacaaggccaccggcctcgccatcaagcactccctcggccagggccacccggtgaagctggcgccgttcaacccggagtacccggacgagtcggtgctgtggacggagagcggcgacgtgggcaagagcttccgctgcattcgcatgctgaacaacatccgcctcaacttcgacgcgttccacggcgacaaggaccacggcggcgtgcacgacggcaccaccatcgtgctctgggagtgggccaagggcgacaaccagtgctggaagatcctcccctggggcgacgaggcctacgccggcggcagcgccaacgcaccccgcggcggcaacgagcccaccgtccgcatcttctgcaaggccgacgagggcttcagcgtcaccgtccgcggcggctccgtctgcctcgcccccaccaaccctcgcgacgagtaccagcactggatcaaggacatgaggcacagcaacagcatcaaggacgaggaagggtaccccgccttcgccctcgtcaacagggtcaccggcgaggccatcaagcactcccaaggcgaaggccaccctgtaagcatccatcctcactactag
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| Protein seq | MAKTSRPSTTAAAAAARTSPPSRSSAAPTRGYCVAVREGNVVLAPTNPRDEHQHWYKDMRFSAKIKDEEGNPAFALVNKATGLAIKHSLGQGHPVKLAPFNPEYPDESVLWTESGDVGKSFRCIRMLNNIRLNFDAFHGDKDHGGVHDGTTIVLWEWAKGDNQCWKILPWGDEAYAGGSANAPRGGNEPTVRIFCKADEGFSVTVRGGSVCLAPTNPRDEYQHWIKDMRHSNSIKDEEGYPAFALVNRVTGEAIKHSQGEGHPVSIHPHY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0016120 | OsGoSa_03g0016120.03 | Chr03 | 12597567 | 12599435 | - | IsoSeq | ||
| CDS seq | TCGCCTCGTCTCACGTTTGATCCATCACACTCACACAACACAACCCTCCCCAAAACCTCCCGAAGCGAGCAAGATGTTCGGCTTCGGGCACCACGGCCACCATGGCCAAGACCAGCCGCCCCAGCACCACGGCGGCGGCGGCGGCGGCGCGCACCAGCCCACCTTCAAGATCTTCTGCCGCGCCGACGAGgggGtactgcgtcgccgtgcgcgaggggaacgtcgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgcttcagcgccaagatcaaggacgaggagggcaacccggcgttcgcgctcgtcaacaaggccaccggcctcgccatcaagcactccctcggccagggccacccg
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| Protein seq | SPRLTFDPSHSHNTTLPKTSRSEQDVRLRAPRPPWPRPAAPAPRRRRRRRAPAHLQDLLPRRRGGTASPCARGTSSSPRPTRATSTSTGTRTCASAPRSRTRRATRRSRSSTRPPASPSSTPSARAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.251525 | 380.871796 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0327600 | RBH | 2.623362 | 2.552539 | 35.018974 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21040 | RBH | 1.859887 | 2.507835 | 7.914575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0327600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016290 | RBH | 0.714725 | 253.304565 | 26.621361 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016130 | RBH | 0.000000 | 0.081079 | 0.331673 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016150 | RBH | 0.521822 | 153.460571 | 23.194981 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016140 | RBH | 0.159261 | 3.717697 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0015940 | RBH | 16.350525 | 198.838058 | 51.585712 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0198600 | RBH | 69.333889 | 195.966255 | 400.3536685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0015820 | RBH | 0.413839 | 10.740458 | 3.844976 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0202700 | RBH | 62.403389 | 76.245964 | 219.537056 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016080 | RBH | 0.471720 | 3.081861 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016090 | RBH | 1.172508 | 150.462601 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027840 | RBH | 133.570053 | 208.551559 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016010 | RBH | 1.687189 | 15.750643 | 5.376459 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015940 | RBH | 0.0 | 87.756462 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G015890 | RBH | 0.388784 | 31.522108 | 23.143164 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0015790 | RBH | 1.541218 | 118.677116 | 27.943039 |
