Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0006060 | OGI:03011580 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:4354062-4361384 | ||||||||
| Gene Symbol | BP73, BP-73, OsBP-73, Riaa1, Os-BP-73 | ||||||||||
| DNA seq | taatggatgccgggagactaactagtctagggagcttaagaggcgcacttcttttgaaaagatcatatcgacggtacatttctttactaagaaccatattaccgcagctaaaacgacaaacattatcatcagcaaactctataaaaaaattgtcatggtctcagtttaattaagccaaatatgcctctgtcggctattctatacttggctcacttaaccaaaaataattagcgcgtgcagacatgtatctatcgaccaccgtgtgtatgacccccaaatccatcaacacaattgcaccatttgtttcatccttggttttccaaatggtggtgtggtttctcataaaaaaagggtatatcatttgattatataacatcatgcttgatcatatgatgagctgaaaagtaaacacctacgcattacaaaattatttttatccttataggaaacaaaatattctaatattatttacataataacgcaaacgtgcacataccgtaaaaccacaccaaaaaccgctgaaaccacatttctcgcagaagattccagaatatgcttcctactctagttttcttatgctctctgtccacaaaaaaacaacataggataatatgtgacgttttctcattgcactaagaaatatcatgccccaccttagattgttcttttatgggatggagggagtagatagttaggctcccccatcctctcactgatcagcaacctctttccccattttatccgttagatgaacacaatttcaacagtactaacttcattatggtcatccatacgtcatagaccaatgcacgcacacacaaaatggacaaaatgttgtaattctaaaaaaagttggacaaaatgatgcacagtagtcaacagataaactaacagataggattagcacggcctaggttaggcacccatcacatcttactgacgtgaaagcacaaatgcatattactatgcatttcgtgagtttacagcgaccaatccaagtcgttagcacttggcattaccttttcacaggtgatttttttttttttttgcttgtgggcacgcaacttgtggcccaacttgggcctgtacttgaggagcaaaagaacctctgtcgcaagttataccacctaaaggaagtacacacgCACGAGCAGTACGAGCTCCATGGAACTAGTAGCTGAAACTCGCTGATCTCTACAGAAAAAATAAGTATGAGTTCTTTTTTCGGCAACTCGAAAAAGTGACTTTCTTTTTTTTTTGTTATCACGTTTCTTATAATGAATGCTGTACATATGTATGTGTGTGTGTATTTCTATGAGATAAAAATAGATATTTCTACGAATATGGGTTTACAGGCATATCTACGAGTATGGGATTACAGGCATTGTAAGAAAAAGGATTATTTTTATCTCATAGATATGTCTTTTTAGAGTGATATGCCTGTGATCCCATACTCGTTCTTCTCAGATATCTGCAGAACAATAAATTTACTGGTTATATCAATGTCCTTGCTAATCTCTCCCTTGATGATCTGTAAGAAATCAACCTATAAGTAATTAATATTTTATTTGCACGTGCAGTACCACATCTCATATCTTTGCTTTCCTATAtataggaatgttgcaaaaaatcatttcactggctggattcctagtcaaattaagaagttaaaacaatctacagtgagttctcctggcttatgaacatgcaaaaatgagagttgtacactgacctattatgatccttgtgtacagaattgacggaaatccaccacctccatcatatacagctcccccctccaccaaaccgtccaaacagcccaggtcaagacaatggtggttcatgttttggtggaagctctggggcagtccttgcattctttgtgataaggagaagaaaacgcaaagctgcaatggaagaacactttgaacagcagcaaccattcacctcattcccttcaaacgaagttaaacgtatgcttacctgatatcagccttgctgatcatcatactttgttttgttatctattttatgcaatcatctgaaaatttgcttctggtaatgtgcagacatgaagcctattgaggagttacaaatagaacagcatggtgaccaatgcaaggtaggttacgatgacaactccagctgcaagtatctgggcttggtgatggcttcacgcgatcctttgatattgtcatgatagttcctgatcaaagcagatgccgacctatatatttatgcttcagaaacagtaaaattcagagagaaatgatcgtcaccatcatttagtatggctatgatcagaaccataaacagagggaagtcgtaatcccatctcggtatgaccggtgctggattgggaacatgattataacctcaacaatcacaccaatggcgattgagtagatacagaagttgcctatggaggtaagaatcagaaaattcagtggttagaaacagcttacagcacatccacttgtgaggttcttataatcttattacagtctaaagattgatgaatcaccttctgaaaatgcccaacaacctcagtggagtccactagatgagctgccttgccaaagaaagagtgtatcccagttgcaatgacaacagcttcaatctCACcatgcttgcatgttgagccagtgaacactatggtccccggttcttttggtgacaggaagggattcaccagtgagagctgactacaagatgaaggacaaacaaaaatgtgatcaaattatttacacggatcaactagtctgacattccagtgatcgacatctttcgcatgaacggcgtgtggcaattcattttcagaggatctccctcaagtaggcacgcatctgcagggacaatgtcaccaaacctgatgctgattatatCccccccaggtaccaatgtggaagcatcaagctcttgccactgctcatctctaagaacctggtagcaaatccatgtatacaacaagatcagactagcacaatggattcacttgcaatttttaaaTttctgttcagAaaaaaaaaaccttTGtttttagcgccaaccgggacatgagtgcagcagctgcatcgcctgcattgttttccttaatgaagctgattgttgaattgataatcgggaggcagacaattcccaggaaatcctcccaatcagtaccttggctctgaacaaagacagtaaacgattgaacaccaaagaaatccattataggttgcttctgcttattcttttcatgaacacacaaaagacttgtgcatcaaacgttcagtaacaaccatggatgtaaacgagagaaaccatgcaacagcagacaagagctgccatgagaaaggagaaacaacagagataagaatagaacactacacatcagaacataatcagcatgacgtcgaatcgttgccagtcttatggccaatccagggttcaattctgatgaaggatttacgcaaaaacaatggtaactagaggctaggtaacagaaagggcaacgataaaaccagaacagaacattgtttaccttgctcatttacagttttctacctaaaagaacttcatctagataagataggaatggcaagatagtgcatatgcccaagacaatgtgactaacaagggacaaaacagagccaagttgacagggctgctgatggatcaagccatgttgctcagcagttcaaccaggtcattcttcttcatcttggaatatcctttgattcctcgagatttcgcaagttctcttagttctgtgaccttcaaagtgcttaaatcaggacctcctaaggaagatttcagagtcgtatcatgagattcatcaataattggaacacttgggatttgcaaagatggCtcatcatattctccactgggttcatcagtatcagaagcatcaggttcatcatctgaaatatgatcaaggtcatccaaagataggttttctggttctattacagaattaggttcgaatgtagaaaccgagtctggttcatctgtagcagccttattttccaaagttggcttagcctcttgtacggcatcattgatgttattgatgactcgttcggcatcaacattggtaacaggctggaactttacattaggaacaggggatcttcgcctaaaatttgaagctggccttttgaaggctgcaggatgtggctttttctgttcttcctgagtgtcattctttatgaagatgcttgaattttgtttatttccagattcattgcttctctttgtttggtcaacactctgttctttctcatcaccgctcttccttcgttggtccactgagtgcttcctaagcagatttagaagggagtcaacactgcccctctcaccctgtgcttttgcttgttcaggcttcttctcctccttccctttcccccttgctcgcaattgtgcttgaacccttttaaacaactctactatctccttctctctttcccctgggactgatgttgcttgaggacgggaattgcttgtcaaagagatgggtggtccatttttggaggacataataTCAGtatcgaattcatcaatattctcagagtCatctttctcctggtaaggcttacttttcctccgagctgatccacccttctgatggcgtgtgatatccgaacttcttgacctatggttgttgggattagcactgcataccaaagacaacttcattgggcgcagcataggcagtttactcaggaaacaagctccaagaagaaatctgttgtctccatgataggctggtaatgttctgcctgaaacccaagaaacaatagcatagtaatgaatAaggacgaaaactaaatgtttcagattgaagggttcacagtacacaagatatatagatacatagaagttggacatacagatggccatggcacaactttctttttccacttcaccccattcccataatgcgaaaacaagtgtacataaagtgcataaaatttttaaaaaaatcatagtgccataagcagttccttctttctatatttgtttatcagtggcagtttcatgttgagtcagcagtgttcacatacataacctgctatgatcattcacacgtaattaacttctaaaaaatgaaatgaaaaaggatgtgtttgtatgttaaaataacgaatagttctcttttacgaaaaggttgcattaccaaaacatataaatatcatgtggagcccagcttgtcggttacaattaactaaaaggaaaaatataagccgctacagatcagagcatacaatcatacacatctgacccatatgggtaagatttggataaaatgtatgggccatttaatgtagacctgctatgtgccttaacaatttaatcctatctggatgaatgcagggcagaggaagctgtaatagggaaatcaagaaagcaatttagggaagaagaagccattcaatttcagctggtctgtttcatgtccatgtgaaggttcattacaatttcagcccattaatcaagcgcattactctggtaaaacataccatgcccactcatataatgtttgctctcagcattacttgcactagcagttagccttctatcacgctgccagtgaggctgtgagttttagccacaagttccattgtgctttgagttcttaaacatgatagcaaaaagagaggaaaataaaggctggaagtctacctacctaactagaagtagatttgaaacattttttcaatacaatgcatcctggaagatagaggtagatgaaaaccttgatcaagaagaatggggctaaggaaacttgcaagaacagtaccagccgatcatctaattaagttcaaacaggttttcaacgcacaaaaacacatccatatgtctgttttcaaagtacaaagagttaatgattgatgatttagaatctccacagatatacttctttaactctaaccactgatatataaagttctattaagatggtgatgtgaaattgataccattagtttcacataaaaggtgagttattcacatagtcttttattattggggaccccacccatctccaaaccatcatgtttacaaatggaggtaccaacattacagaggcagtatatattatagtacataacagataaccaacggctggtgttttcaagctgctatggaaaagaacatatctagccttggcttagtggaccctaatagagtgaaattctattcatgtgttattcaatagatttcacttatcattcttctacctcaagatgtcaccgtctgatctctcccggaggaatattcactatcctgatgcaatagcatttcctattcatgacaaaatggaactagacatcaacaagaggtctagtagcctatactacctacctcatttatcattgtgtatatagtgcttccagacatatagcactaaaaatgctgataagcatgtaatttgacaccaaattaaccatgaaagtaatatgcggacagcaagaattcctttagctaagacagttttaaatttccagtttttcccaagctgctctacggcttgtgaggatgcatcatcctacagtgatttcttaccacacttagggctagaagtttggatcgcgtgatatttaaaggaaatgacaggaaacagaataattcatttggttttaaagcctttttcactgttctaaccatatacgttctccaagctgtgccagcaagcagcctttggaaacctgggtaaaatggcacactcataaacagtgtatgaatcattaataacttgctaaagaaactAaacttaataactctatatttcattcttacaatgtatcatcataTttacaccagcagtgcgtgcgagccagaTtttttgaaagaaaatgcgagccagatttcatagagaacgatagttagttttccttaaaagagctaagagacaatgcgccacacacattaaagcagtggcggatctgacatgggacataGgggttcagttgaaccccacccccccccccccccccaaccccaaacttttttcggaacaaacatttgttagtattaaggttaaggcaaatttctactacaacgaagctaggattaacgcaaattcgagaaaaaaaattgcgtgggtggagagagggagatgagacgagaggatgtgcgtcgtaagggatgcggcggaagcagcaggacaaacgacggcgaccccgctcgctcgctctagcgatggatggatgggaatcggcgcaggcggcggtggcggaggatgtgctcacctggatgcggcggaagcagcatgacgaacgacggcgccgacggcgccctgctcgctcgcgcctcgcgggatggatggggatcggcggc
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| CDS seq | atgctgcttccgccgcatccaggcagaacattaccagcctatcatggagacaacagatttcttcttggagcttgtttcctgagtaaactgcctatgctgcgcccaatgaagttgtctttggtatgcagtgctaatcccaacaaccataggtcaagaagttcggatatcacacgccatcagaagggtggatcagctcggaggaaaagtaagccttaccaggagaaagatGactctgagaatattgatgaattcgataCTGAtattatgtcctccaaaaatggaccacccatctctttgacaagcaattcccgtcctcaagcaacatcagtcccaggggaaagagagaaggagatagtagagttgtttaaaagggttcaagcacaattgcgagcaagggggaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagtgttgactcccttctaaatctgcttaggaagcactcagtggaccaacgaaggaagagcggtgatgagaaagaacagagtgttgaccaaacaaagagaagcaatgaatctggaaataaacaaaattcaagcatcttcataaagaatgacactcaggaagaacagaaaaagccacatcctgcagccttcaaaaggccagcttcaaattttaggcgaagatcccctgttcctaatgtaaagttccagcctgttaccaatgttgatgccgaacgagtcatcaataacatcaatgatgccgtacaagaggctaagccaactttggaaaataaggctgctacagatgaaccagactcggtttctacattcgaacctaattctgtaatagaaccagaaaacctatctttggatgaccttgatcatatttcagatgatgaacctgatgcttctgatactgatgaacccagtggagaatatgatgaGccatctttgcaaatcccaagtgttccaattattgatgaatctcatgatacgactctgaaatcttccttaggaggtcctgatttaagcactttgaaggtcacagaactaagagaacttgcgaaatctcgaggaatcaaaggatattccaagatgaagaagaatgacctggttgaactgctgagcaacatggcttga
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| Protein seq | MLLPPHPGRTLPAYHGDNRFLLGACFLSKLPMLRPMKLSLVCSANPNNHRSRSSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSNSRPQATSVPGEREKEIVELFKRVQAQLRARGKGKEEKKPEQAKAQGERGSVDSLLNLLRKHSVDQRRKSGDEKEQSVDQTKRSNESGNKQNSSIFIKNDTQEEQKKPHPAAFKRPASNFRRRSPVPNVKFQPVTNVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSLDDLDHISDDEPDASDTDEPSGEYDEPSLQIPSVPIIDESHDTTLKSSLGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLSNMA |
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| Function | SAP-like protein BP-73 [UniProtKB/Swiss-Prot:Q8L4E7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0006060 | OsGoSa_03g0006060.01 | Chr03 | 4354062 | 4361384 | - | NAM | ||
| CDS seq | atgctgcttccgccgcatccaggcagaacattaccagcctatcatggagacaacagatttcttcttggagcttgtttcctgagtaaactgcctatgctgcgcccaatgaagttgtctttggtatgcagtgctaatcccaacaaccataggtcaagaagttcggatatcacacgccatcagaagggtggatcagctcggaggaaaagtaagccttaccaggagaaagatGactctgagaatattgatgaattcgataCTGAtattatgtcctccaaaaatggaccacccatctctttgacaagcaattcccgtcctcaagcaacatcagtcccaggggaaagagagaaggagatagtagagttgtttaaaagggttcaagcacaattgcgagcaagggggaaagggaaggaggagaagaagcctgaacaagcaaaagcacagggtgagaggggcagtgttgactcccttctaaatctgcttaggaagcactcagtggaccaacgaaggaagagcggtgatgagaaagaacagagtgttgaccaaacaaagagaagcaatgaatctggaaataaacaaaattcaagcatcttcataaagaatgacactcaggaagaacagaaaaagccacatcctgcagccttcaaaaggccagcttcaaattttaggcgaagatcccctgttcctaatgtaaagttccagcctgttaccaatgttgatgccgaacgagtcatcaataacatcaatgatgccgtacaagaggctaagccaactttggaaaataaggctgctacagatgaaccagactcggtttctacattcgaacctaattctgtaatagaaccagaaaacctatctttggatgaccttgatcatatttcagatgatgaacctgatgcttctgatactgatgaacccagtggagaatatgatgaGccatctttgcaaatcccaagtgttccaattattgatgaatctcatgatacgactctgaaatcttccttaggaggtcctgatttaagcactttgaaggtcacagaactaagagaacttgcgaaatctcgaggaatcaaaggatattccaagatgaagaagaatgacctggttgaactgctgagcaacatggcttga
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| Protein seq | MLLPPHPGRTLPAYHGDNRFLLGACFLSKLPMLRPMKLSLVCSANPNNHRSRSSDITRHQKGGSARRKSKPYQEKDDSENIDEFDTDIMSSKNGPPISLTSNSRPQATSVPGEREKEIVELFKRVQAQLRARGKGKEEKKPEQAKAQGERGSVDSLLNLLRKHSVDQRRKSGDEKEQSVDQTKRSNESGNKQNSSIFIKNDTQEEQKKPHPAAFKRPASNFRRRSPVPNVKFQPVTNVDAERVINNINDAVQEAKPTLENKAATDEPDSVSTFEPNSVIEPENLSLDDLDHISDDEPDASDTDEPSGEYDEPSLQIPSVPIIDESHDTTLKSSLGGPDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELLSNMA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0006060 | OsGoSa_03g0006060.02 | Chr03 | 4354823 | 4357593 | - | NAM | ||
| CDS seq | atgagcaagagccaaggtactgattgggaggatttcctgggaattgtctgcctcccgattatcaattcaacaatcagcttcattaaggaaaacaatgcaggcgatgcagctgctgcactcatgtcccggttggcgctaaaaaCAaaggttcttagagatgagcagtggcaagagcttgatgcttccacattggtacctggggggGatataatcagcatcaggtttggtgacattgtccctgcagatgcgtgcctacttgagggagatcctctgaaaatgaattgccacacgccgttcatgcgaaagatgtcgatcactggaattcagctctcactggtgaatcccttcctgtcaccaaaagaaccggggaccatagtgttcactggctcaacatgcaagcatgGTGagattgaagctgttgtcattgcaactgggatacactctttctttggcaaggcagctcatctagtggactccactgaggttgttgggcattttcagaaggcaacttctgtatctactcaatcgccattggtgtga
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| Protein seq | MSKSQGTDWEDFLGIVCLPIINSTISFIKENNAGDAAAALMSRLALKTKVLRDEQWQELDASTLVPGGDIISIRFGDIVPADACLLEGDPLKMNCHTPFMRKMSITGIQLSLVNPFLSPKEPGTIVFTGSTCKHGEIEAVVIATGIHSFFGKAAHLVDSTEVVGHFQKATSVSTQSPLV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 4356586 | 4357004 | - | OsGoSa_03g0006060.01 | OsGoSa_03g0006060.01,OsGoSa_03g0006060.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.968259 | 18.399696 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0183100 | RBH | 2.635740 | 1.205998 | 5.711257 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08480 | RBH | 1.676807 | 0.783336 | 1.385878 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0183100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006170 | RBH | 0.878215 | 3.765102 | 3.986557 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006130 | RBH | 0.207289 | 1.817123 | 2.251586 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006150 | RBH | 2.009275 | 1.604356 | 6.405293 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006140 | RBH | 0.371929 | 0.119176 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006090 | RBH | 6.108828 | 4.234708 | 8.458936 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0071000 | RBH | 22.139358 | 29.229779 | 52.6783905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0005990 | RBH | 0.707921 | 0.257547 | 0.785766 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0071200 | RBH | 22.7434895 | 39.322277 | 31.417219 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006050 | RBH | 0.213562 | 0.119192 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006070 | RBH | 0.522851 | 3.669731 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006080 | RBH | 1.312515 | 0.502712 | 1.432202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006070 | RBH | 0.309567 | 2.249259 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006100 | RBH | 0.941302 | 0.000000 | 1.716272 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005920 | RBH | 2.379839 | 3.906806 | 3.210865 |
