Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0004800 | OGI:03009340 | 15/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:3567037-3568050 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACCATTGTGtgtaaatcacaccatcgggtaccaatccaaagcacctcatctccctcaagtacgccatcgcatggtccatcttccccctccttgcaaacaatccaattaagcaactaaagctcaccaaatctggtttaataccacggtgccgcatctccttgtaaatcttcaacgcctcctcaatctccccaactctacaaaatcccctaatcaaaatggtaaaactccgaacatcaggcgcaacaccaaaatcatccatttctttgaacacttcccgtgctttatcccacatcccactcctacataaccctttcagaaccgaattatacgtcacaatcccaggctttagccctttactaaccattgagtcaaccaacgccattgctgcctccgcgtccccagcgcgaaatctagcatcaaccatcacattatgtgtaaccacatcaggaaagacacatctcttctccatctcggagatgacagcgtcaaccttgtcgaactccagggctttgcagtagttgtggaccattatgttaagcgtgtacgtgtttacctcggagttggaggagaagacaaggcggtaggcgtccgcggcgagatggggccatccggcgcgggagagggcggcgagcagggcgttggaggcggcggcggggatggggacgcggtggtcgaggatgaggcggaatgcctcgaaggcctcgcggggcttgcgggactgggtgtaggtgcggattaggaggtcaaacacccgcggctgcggggtgggggaggagccgaggagggaggagacgatctcgcgacggcaggcgccgcggcggcgcgacatgcggaggaggagggactggcattcggaggcgcgaccggcggccgccgcggccgtcgcggcagcggccaggtcggctgttgcgggcttccctccgcttccaccgagggcggcggcgagacctgccgccgagcgtttggtggtttcggcggccgcggcggaggcgaggcgacggggaatcgccat
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| CDS seq | atggcgattccccgtcgcctcgcctccgccgcggccgccgaaaccaccaaacgctcggcggcaggtctcgccgccgccctcggtggaagcggagggaagcccgcaacagccgacctggccgctgccgcgacggccgcggcggccgccggtcgcgcctccgaatgccagtccctcctcctccgcatgtcgcgccgccgcggcgcctgccgtcgcgagatcgtctcctccctcctcggctcctcccccaccccgcagccgcgggtgtttgacctcctaatccgcacctacacccagtcccgcaagccccgcgaggccttcgaggcattccgcctcatcctcgaccaccgcgtccccatccccgccgccgcctccaacgccctgctcgccgccctctcccgcgccggatggccccatctcgccgcggacgcctaccgccttgtcttctcctccaactccgaggtaaacacgtacacgcttaacataatggtccacaactactgcaaagccctggagttcgacaaggttgacgctgtcatctccgagatggagaagagatgtgtctttcctgatgtggttacacataatgtgatggttgatgctagatttcgcgctggggacgcggaggcagcaatggcgttggttgactcaatggttagtaaagggctaaagcctgggattgtgacgtataattcggttctgaaagggttatgtaggagtgggatgtgggataaagcacgggaagtgttcaaagaaatggatgattttggtgttgcgcctgatgttcggagttttaccattttgattaggggattttgtagagttggggagattgaggaggcgttgaagatttacaaggagatgcggcaccgtggtattaaaccagatttggtgagctttagttgcttaattggattgtttgcaaggagggggaagatggaccatgcgatggcgtacttgagggagatgaggtgctttggattggtacccgatggtgtgatttacaCACAATGGTAA
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| Protein seq | MAIPRRLASAAAAETTKRSAAGLAAALGGSGGKPATADLAAAATAAAAAGRASECQSLLLRMSRRRGACRREIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAREVFKEMDDFGVAPDVRSFTILIRGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTQW |
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| Function | Pentatricopeptide repeat-containing protein At5g01110 [UniProtKB/Swiss-Prot:Q9LFC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0004800 | OsGoSa_03g0004800.01 | Chr03 | 3567037 | 3568050 | - | NAM | ||
| CDS seq | atggcgattccccgtcgcctcgcctccgccgcggccgccgaaaccaccaaacgctcggcggcaggtctcgccgccgccctcggtggaagcggagggaagcccgcaacagccgacctggccgctgccgcgacggccgcggcggccgccggtcgcgcctccgaatgccagtccctcctcctccgcatgtcgcgccgccgcggcgcctgccgtcgcgagatcgtctcctccctcctcggctcctcccccaccccgcagccgcgggtgtttgacctcctaatccgcacctacacccagtcccgcaagccccgcgaggccttcgaggcattccgcctcatcctcgaccaccgcgtccccatccccgccgccgcctccaacgccctgctcgccgccctctcccgcgccggatggccccatctcgccgcggacgcctaccgccttgtcttctcctccaactccgaggtaaacacgtacacgcttaacataatggtccacaactactgcaaagccctggagttcgacaaggttgacgctgtcatctccgagatggagaagagatgtgtctttcctgatgtggttacacataatgtgatggttgatgctagatttcgcgctggggacgcggaggcagcaatggcgttggttgactcaatggttagtaaagggctaaagcctgggattgtgacgtataattcggttctgaaagggttatgtaggagtgggatgtgggataaagcacgggaagtgttcaaagaaatggatgattttggtgttgcgcctgatgttcggagttttaccattttgattaggggattttgtagagttggggagattgaggaggcgttgaagatttacaaggagatgcggcaccgtggtattaaaccagatttggtgagctttagttgcttaattggattgtttgcaaggagggggaagatggaccatgcgatggcgtacttgagggagatgaggtgctttggattggtacccgatggtgtgatttacaCACAATGGTAA
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| Protein seq | MAIPRRLASAAAAETTKRSAAGLAAALGGSGGKPATADLAAAATAAAAAGRASECQSLLLRMSRRRGACRREIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAREVFKEMDDFGVAPDVRSFTILIRGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTQW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.227060 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0165100 | RBH | 0.270722 | 0.553463 | 0.269234 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06910 | RBH | 0.205819 | 0.418137 | 0.077849 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0165100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004920 | RBH | 0.292397 | 1.347780 | 1.628678 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004850 | RBH | 0.083023 | 0.0 | 0.514378 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004890 | RBH | 0.000000 | 0.190575 | 2.275540 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004820 | RBH | 0.069608 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004860 | RBH | 1.492032 | 0.0 | 4.525388 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0056000 | RBH | 0.85073 | 3.0592805 | 1.5960155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004740 | RBH | 0.047221 | 0.167954 | 0.220280 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0089900 | SBH | 1.301398 | 6.641726 | 4.302425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004840 | RBH | 0.023622 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004820 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004840 | RBH | 0.171279 | 0.116509 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004820 | RBH | 0.114670 | 1.927207 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G004830 | RBH | 0.076517 | 0.0 | 0.545603 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004660 | RBH | 0.0 | 3.567733 | 1.524507 |
