Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_03g0001860 | OGI:03003460 | 9/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr03:1298174-1300001 | ||||||||
| Gene Symbol | MADS50, OsMADS50, AGL20, SOC1, OsSOC1, RMADS208, OsSOC1/ OsMADS50/DTH3, DTH3, OsDTH3 | ||||||||||
| DNA seq | agatgtatgcagttttggcaataagctacatgttgttttagttgtacagcattaataagattggaggctccctggaaactcccgtcagtgtgctttcatgcatgtcacgcatagaaattcatatgcacggcaagattactgcaacgtacattatcattaactaattagtgctcatatcatattgccctccggaatgccagtactaagttgcctatgttttcagaatttctaaccttgccagtctcacaactaatttctttatggaagtagtgtgactgtttagacggcaactgaacaaagcaaagtgaagtttggcaattcagtagcttagcatagcttttctaatacactagttaactagcgtatactaattaagtcatgtgtaattggaaattgataagattagccggtgagatgtaaagaaccggtggttatgtaccactgaatacaacatagtagtactctctaatgaagcaatagaccacccctagatgtggaaccgataattctatctagttaatacagtacgtggccaggaaataaaatccaccacagtgcgtgcatacagcagcagtacacaatatcacatgcattggttttgtttctgcacgtcatgtcagcccaaatgatagcaacagcaagtagcccaagaaagaacatgtattgcaaaacaaatcactgattaactagccgtacgtctaagcagcccggaccaccaaaaaaatacagtaagagcaagaatagtaatgggctataagcaagctatatgcttatgtgaaagagggagataaaagaaaagtgggtagcgttggctctcatgcaagagccagctccacacaagctccaagaaatttgcattaaattcatagagtgagaaagagagagaatggaaaaaataaagttaacattataaagttaacaagttagctccaacattgacttatagtaagcagtgagctctgctattaaacttgctctaaggattctgaaatatttcttcagacaaagcattaagtgcgttcgttctcgacaaatttctagactgacctcaatcgccacacggggaaatttcaagcatgaggattggaggaaggagatcagaaacgcactcgtcggcaaaatccaggcgagaatctctcgggcggagacgtgcggttgggggaaagaggcaaagagctcgaagaaataatcaagataagcagattcttgggggaggagagagagagggcagcatggcatctgcatagtgcagatgttatactagtaattcatcacacccacaaaaaaatttgcaagaaaaaatctgcggacgcatcacgaagggccatcaagtcgggcggggggcagttgctacaggagtttggcacaggcagcgggaagatccatcggtcctcgcaggtttTCtCTTCTTAGGGATTTCAGGAAAAGACTAGTAATAAACTAATATGAGACCCCCGTTCCCCACCACTAAGCAACAAAACAAGAGAAGATTGGGGGATGGGGACAAGAAGAAGAGCAGATTGGGCAGGAGGAGGAGGGGGGGAGGGGGGGTGCGTACCTGGCGCTGGCGAATTCGTAGAGCTTGCCGCGCGGGGAGAAGACGATGAGCGCGACCTCGGCGTCGCAGAGGACGGAGAGCTCGAAGGCCTTCTTGAGCAGGCCGTTGCGGCGCTTGGAGAAGGTGACCTGGCGGCTCGTGGGGTTCTCTATCCGCTTCATCTGCGTCTTCCCCCGCACCATCTTCGATCGCCGATGAACCAACCAACCACACGAGCGGCTGCGGCCTGCACGGCGGAGGAGGgaggaggaggagcagcgagagatgcag
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| CDS seq | ATGGTGCGGGGGAAGACGCAGATGAAGCGGATAGAGAACCCCACGAGCCGCCAGGTCACCTTCTCCAAGCGCCGCAACGGCCTGCTCAAGAAGGCCTTCGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCGCTCATCGTCTTCTCCCCGCGCGGCAAGCTCTACGAATTCGCCAGCGCCAGctatgctaagctactgaattgccaaacttcactttgctttgttcagttgccgtctaaacagtcacactacttccataaagaaattagttgtgagactggcaaggttagaaattctgaaaacataggcaacttagtactggcattccggagggcaatatga |
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| Protein seq | MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASYAKLLNCQTSLCFVQLPSKQSHYFHKEISCETGKVRNSENIGNLVLAFRRAI |
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| Function | MADS-box transcription factor 50 [UniProtKB/Swiss-Prot:Q9XJ60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0001860 | OsGoSa_03g0001860.01 | Chr03 | 1298350 | 1300001 | - | NAM | ||
| CDS seq | ATGGTGCGGGGGAAGACGCAGATGAAGCGGATAGAGAACCCCACGAGCCGCCAGGTCACCTTCTCCAAGCGCCGCAACGGCCTGCTCAAGAAGGCCTTCGAGCTCTCCGTCCTCTGCGACGCCGAGGTCGCGCTCATCGTCTTCTCCCCGCGCGGCAAGCTCTACGAATTCGCCAGCGCCAGctatgctaagctactgaattgccaaacttcactttgctttgttcagttgccgtctaaacagtcacactacttccataaagaaattagttgtgagactggcaaggttagaaattctgaaaacataggcaacttagtactggcattccggagggcaatatga
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| Protein seq | MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASYAKLLNCQTSLCFVQLPSKQSHYFHKEISCETGKVRNSENIGNLVLAFRRAI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_03g0001860 | OsGoSa_03g0001860.02 | Chr03 | 1298174 | 1298429 | - | IsoSeq | ||
| CDS seq | attagttgtgagactggcaaggttagaaattctgaaaacataggcaacttagtactggcattccggagggca |
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| Protein seq | ISCETGKVRNSENIGNLVLAFRRA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 20.323725 | 29.191914 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0834466 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03100 | RBH | 2.290699 | 1.817765 | 0.283641 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0834466 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001820 | SBH | 1.299380 | 12.900104 | 6.932891 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001820 | RBH | 0.654060 | 0.000000 | 1.940820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008560 | SBH | 0.0 | 0.0 | 157.260971 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001830 | RBH | 0.256791 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001870 | RBH | 8.461850 | 5.994964 | 17.775881 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0020200 | RBH | 4.492869 | 13.8711655 | 4.2294515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001800 | SBH | 0.811805 | 1.461820 | 2.402406 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0020400 | RBH | 6.8245135 | 8.9453395 | 4.194875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001870 | SBH | 0.457939 | 0.441753 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001890 | SBH | 1.644451 | 8.723147 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023730 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0001890 | RBH | 0.261217 | 0.000000 | 0.328251 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001880 | SBH | 1.176845 | 7.711685 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001890 | RBH | 0.123768 | 5.742042 | 1.481982 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001720 | SBH | 3.025830 | 21.688650 | 6.372083 |
