Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0031480 | OGI:02084430 | 1/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:31009653-31012744 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcagcagcagcagtgaatgctactctcgctctgctactcactcctggcgccggtgacctctctgccactccaccggacggcgacggcgaggcgggtgagctctctcgccgcctccggctctcctgccaccgggcctccacattcggcgtcgcactccttcgtcttcgcgtgatccggtaagccgtcgccgctcgtggcaacggagatctggttattttggtgcttgatgtgtgtggatgagctgagagtttcgtggattagtggagtctaagagatggccttggcttgggtggtgggattggcgcgtcgcggcggcggaatgcgcttgtctgtctctcgacccctgatttggttagtctcgatggttccggtggttttgttcttaggaatttccgaagaatttcatccagttgtcgaccaatggcgttgtttgtagttctagatttggtccagttgcgtgctcggtggagatgatctcgatgcagagctatctccatatgaattatcgaTtttggttgcgtttcaccgatggatttgtttaggtttgagataaatgttgttggcctgttgaaactcccaggtattgagctgttttgttgttgttgttgtgtgcGgcagtaattaatgttttttcccttgggccatcagctgtttctgcgattggcatttaatagtatttctgtcaattggtgggggagatgtgatgctagaacgatttaaaatgctagtagttatatgtgtctcttataatcatatctgaccaattgaaatgctcagcctggcagatcgggatcgactaagcattggcctttgcaagttttgaagtgcatttcaccgttgcttttgtcttgagcaagagtttatagagccatacagctccgacaaaaggattcacctattccagaatgtctgctttgctccgtgaaacttcgtgtggatcattgctgcaaaaactgcaggtatgcgtgtgaactgctccatacttgttcatgtcataactcattagagattttttttttgcttgtgtatttgtgttcaagtagaggttcttcttttctatttttgaattatcagtcggtatgggatgaagttggtgaaagcgaggaggaccgcgacaaggttctatttcagctggaccaggagtgtttggatgtctacaagcggaaagttgatcaggcaaccaaatcaagggatcttcttctccaggcactggattactcaaagacagagcttgctaggcttgcttctgcccttggtgaaaaatccatagatataagtgtaagtaaatatgcgcgtcttcttccagtacgcataggctaatttcagtctgaattaatactggaaagaatgaggcaggcacgattcactaaaattttcagtattcaaatatgagttgttgaaatactgactactgatccactttcgtgttgttccgtgtcattgtgtttcttgcatcttgacttaccagttctgccatgctagagtatgtttggtgttgattgctggcactattagtacttgcatagaagttcagtaaaaatgcagttggttttttagtaacggtgtgcaagtcctcttgaaactgatgattatggttaataggatctggcattgtagttcagaagtcagatggcacttcacatgtttgctaaattattatgcttaaatattagtggatgcaaaagtgacaattttttatctgtacagcctgagaaaacagcacggactatcaaggaacaactaactgctatagctccaacacttgaacaattgggcaagaagaaaaaggagagaataaaggaattagctaatatacagtcaagaattgagcaaatacgtggtgagattgctggtactctggagatGggacagcaagtggcactaccacagattaatgaggatgatttgacagttcggaagcttcgagagttccagttacagcttcaagagcttgagaaagagaaggtacaaactttgtctgtttgatttggttttcataagtaatttatattgcttggtgatctctgtgtttttggtttcatagagactataatatatgtttccatgaatatcacagagtcgtaggctggaaaaggttcttgagcatgttggtatggtacatgatctatgcaatgtgcttgggatggatttttttagaacaataactcaagtccatagcagtctagatgactctattggtaacgaacacaagaacataagcaatgaaaccctgtcAaaacttgataggaccattggtactcttaatgaggacaaaaggttgagacttgagaaggtaactcatattttctttctttcagttttatacttagcaaccaagagccattcttatcctggatctcatgtatgatttatactgtttattcagcttcaagagcttgccactcaactctatgatctatgggatcttatggacaccccggtggaagaaaggagcttgtttgatcatgtttcgtgcaatagaacagcaactgttgaggaggtcatggttcctggtgcacttgctgttgatgtgattgatcaagtgagtcacacaatatactaattggtcTtttgttggaccaccttcagcatcccttcATatatattttttacttctcgtttgattttgatcttcattacccaatatttcaggcacagactgaggttgaaaggttggatcagctaaaatacagcaagatgaaagaaatagcttttaagaagcaagccatactggaagatatttatgctagcactcatgttgtattagacacagcagttgcccatgagaaaatacaggcactgattgagtcagggaacatggaaccttcagaactgattgctgacatggatagtcagatactgaaagcaaaggaggaagctctgagcagaaaagaaatattagataaagttgagagatggatatcctcatgcgaggaggaaagctggcttgaagactatagcagagtatggttgttctgactactagtgaaacgtgttatcccacctatattctgaagctatgaagtactgagcatgaaattccttttgcaggatgacaacaggtataactcaggccgaggtgctcacctga
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| CDS seq | atgtctgctttgctccgtgaaacttcgtgtggatcattgctgcaaaaactgcagtcggtatgggatgaagttggtgaaagcgaggaggaccgcgacaaggttctatttcagctggaccaggagtgtttggatgtctacaagcggaaagttgatcaggcaaccaaatcaagggatcttcttctccaggcactggattactcaaagacagagcttgctaggcttgcttctgcccttggtgaaaaatccatagatataagtcctgagaaaacagcacggactatcaaggaacaactaactgctatagctccaacacttgaacaattgggcaagaagaaaaaggagagaataaaggaattagctaatatacagtcaagaattgagcaaatacgtggtgagattgctggtactctggagatGggacagcaagtggcactaccacagattaatgaggatgatttgacagttcggaagcttcgagagttccagttacagcttcaagagcttgagaaagagaagcttcaagagcttgccactcaactctatgatctatgggatcttatggacaccccggtggaagaaaggagcttgtttgatcatgtttcgtgcaatagaacagcaactgttgaggaggtcatggttcctggtgcacttgctgttgatgtgattgatcaagcacagactgaggttgaaaggatgacaacaggtataactcaggccgaggtgctcacctga
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| Protein seq | MSALLRETSCGSLLQKLQSVWDEVGESEEDRDKVLFQLDQECLDVYKRKVDQATKSRDLLLQALDYSKTELARLASALGEKSIDISPEKTARTIKEQLTAIAPTLEQLGKKKKERIKELANIQSRIEQIRGEIAGTLEMGQQVALPQINEDDLTVRKLREFQLQLQELEKEKLQELATQLYDLWDLMDTPVEERSLFDHVSCNRTATVEEVMVPGALAVDVIDQAQTEVERMTTGITQAEVLT |
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| Function | 65-kDa microtubule-associated protein 1 [UniProtKB/Swiss-Prot:Q9FLP0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0031480 | OsGoSa_02g0031480.01 | Chr02 | 31009653 | 31012744 | + | NAM | ||
| CDS seq | atgtctgctttgctccgtgaaacttcgtgtggatcattgctgcaaaaactgcagtcggtatgggatgaagttggtgaaagcgaggaggaccgcgacaaggttctatttcagctggaccaggagtgtttggatgtctacaagcggaaagttgatcaggcaaccaaatcaagggatcttcttctccaggcactggattactcaaagacagagcttgctaggcttgcttctgcccttggtgaaaaatccatagatataagtcctgagaaaacagcacggactatcaaggaacaactaactgctatagctccaacacttgaacaattgggcaagaagaaaaaggagagaataaaggaattagctaatatacagtcaagaattgagcaaatacgtggtgagattgctggtactctggagatGggacagcaagtggcactaccacagattaatgaggatgatttgacagttcggaagcttcgagagttccagttacagcttcaagagcttgagaaagagaagcttcaagagcttgccactcaactctatgatctatgggatcttatggacaccccggtggaagaaaggagcttgtttgatcatgtttcgtgcaatagaacagcaactgttgaggaggtcatggttcctggtgcacttgctgttgatgtgattgatcaagcacagactgaggttgaaaggatgacaacaggtataactcaggccgaggtgctcacctga
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| Protein seq | MSALLRETSCGSLLQKLQSVWDEVGESEEDRDKVLFQLDQECLDVYKRKVDQATKSRDLLLQALDYSKTELARLASALGEKSIDISPEKTARTIKEQLTAIAPTLEQLGKKKKERIKELANIQSRIEQIRGEIAGTLEMGQQVALPQINEDDLTVRKLREFQLQLQELEKEKLQELATQLYDLWDLMDTPVEERSLFDHVSCNRTATVEEVMVPGALAVDVIDQAQTEVERMTTGITQAEVLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.447893 | 6.088962 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0720200 | SBH | 0.041358 | 0.526008 | 1.297480 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48830 | SBH | 0.027896 | 0.393992 | 0.368775 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0720200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031590 | SBH | 0.0 | 0.000000 | 3.359029 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031700 | SBH | 0.028240 | 1.491097 | 1.761544 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031570 | SBH | 0.0 | 1.023271 | 3.811863 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031160 | SBH | 0.0 | 0.346554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031280 | SBH | 0.346406 | 14.584048 | 11.274922 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0487600 | SBH | 5.849115 | 5.414801 | 40.1558 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031040 | SBH | 0.0 | 1.024906 | 0.486835 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0515600 | SBH | 6.6458325 | 2.144505 | 40.0011635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0031330 | SBH | 0.0 | 0.222106 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031120 | SBH | 0.238225 | 9.055472 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0012580 | RBH | 0.000000 | 76.209846 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031330 | SBH | 0.135171 | 0.363439 | 0.341841 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030950 | SBH | 0.0 | 1.487569 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031620 | SBH | 0.000000 | 3.834918 | 3.642581 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031370 | SBH | 0.0 | 3.436222 | 2.967344 |
