Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0029860 | OGI:02080670 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:29784673-29790519 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagaaccgggaagttgttaacagttggctattggtgaagttagcatatggagaatcgggtctggccttcccaatcttctttgccctagaatgtgtatcttcacgtcctatattcttctttggtgttagatcatgcacctctctcttgtgtccaacaacactttgcagtgcattatcaatgctattgtgcttgaacacctcagttagtgccaccgaatttccttagttagctgagttatgtctcgcaatagtcgacaccttaaattgagtgaaaatcatatttaacatccagattaccacatatagcaatatcactctaattttgacttaaatgtactagtaacaattagtgaaatatgcagtaccttagagtgtagagcttgaccacttggatgcattagctgcaatgtaattttaaaaaattagttgcatgtaaataagctagacaaatgaaataatagcatcatacattgtcacgtggccatgggatgcatcgagcttgagcacttcctaacttgctgatcattccatatgcacgaggtattatggtgtgctgattgaatacaatgttaacaaggatgtcaacacaatcatttagtgcctggccatcaacagaaatagcgtttttgtcggtcttctgaatggtacctagagcaaccatttttccactttttggagatattaggccaactttcataccacttttcaagatagcttttgtatctaatccagcctaaaagaagagatatagcttgtgagtctttctccttttagctagttcactagtaaaatgcaaaaaaagcatacctccagcccttcatggagtggtgtatgaaactgtctttttctgttttgtagattgggttcagatgaagttggtttctttgatttctgttggacagcatatgaaggtggtatattctccttattcaaatctagccgaggggatctaaacttcttttttgttgaggaggtgatgtcacttgaccaaaaggctactcattcaggaaaataacatatcagtaacaattagttgtatcaaattttaactcaagcacatatatgagatgctaaactgttgcatacctctgactgtttatgcaattctagatgaggagatctaaacttctgttttttgctgaggaagtgatgtcactttactagacggctagtcattcagAaaaaaaaagattagcaacaactagttgaactaatttttaactcaccacatgtattaaatgctagattgttgcatacctgtgactgtagaagtgttttcttgtttctggatgaaagtgatggtgcttgattgatgcaattcataggatccagttccttgaattaaaaaaagatataagatttatcaggtgcaattggtaattgtcaaagctataaaggacgatgggatggtatagtaaatAaaaaaggaactcacctccaactgatttttagctggtgaattagacacctgacttctattcataggtgcatgcccttgggaagctagcaacatactttttaattcctcatattgtttttccagcctttcattccgtgccatcatcaaggtctgatttgctgctaatgtgtccaccatactccaaagctccttgttctcctgtttagtttcttctagttgtgcgatagcttcagctaggtgccttgaagccactccacctgctagcaggcccatgccactgttctttctagttttcttccttggaaacatttctgaatatagatcatcatctcgtgcctcttcaccgatatgagcagggttttcctcgatccttcttttaatcctttgttgaaattaacaaccatacatggttatcaatcatgaaggatacttgtacaatcagcaagcacatatgtaatttttttaaagcaaaacagtacacttgtacaaatactagatgagaaatcaggaaaagagcatacaattttatcactacagtattcatccaagggttctccatttcttttggtatgagtaattacatagagttcagcccgtccaacttttctgttctctttaagctcctgcaatgatatgacaatgctatagaatttgcagttgcatagctaaaataatttgaaaggccatacaagcaataaaagtaccgtttgatcaagaacaactgcaaaacctcgtgaaccagtggtgtgagttccattgagttgcaaggatctagtagctttattcctctctgacttgatctataagcaagaaatataacacatataagattAaaaaatctaatcagatatgttgttctataatttatttcaaacatgtacttatttttggcaagtatactttacccgagctgcttcagtcttccaatacctcaccaaccatgcccattgttttatagggattctttcttggcagccattaagtacattttgtctccatgataactcagaattgaagtacattctcttcaagacagctttaaaatctttccactttttgctagctgatttcaaaatccaaggtttgtaatgatcctcaatgtcaaaaattccctgtaatatagtgttgttaccaccacattacatagttgtttataatgtaagtgcaagtgcaagattgctaaagctgagacatacctgaacagatgtccaaactttcgtcttgcttgcttcaggtacctttctccaattctttgcagccaaggatacatatttgcctttgacaagagttccaataaaattggttaatttgcaagtctttaatccacaaggttgaccatatcgattgaatttcaatctgatcttctcattgtgatcaaggtccttccatagcgatctcatcattgtggggcctcttccacttttctttgtactttctagcatttcttcaaaataaaatcagaactggaccttcatgttcaaaactaaaattcatgtccattacatgttaatatgctcaaaaactcaccatgaacttgaccttcatgctccaagtcagcataaggtggcaaattgtccccaggttcagtctcatcacaatcttcagagctacagtaatcttcatagtcatctccctcatcggatcctccattgcttattatgtcatcttcagtttgaaagttgtgttcatatgtgtatccatttgcatcataaggcagattgcaactatgtgttgtagattaacaatgcagcataaaacaacttaggacagacattcagaagtgcacatattcagattaacctgcaaatgtgtcattttgtttggatgccaatggcattgcagcatgaaagtttcttgatttaaactatcattaaaaacagcaacaaagttcagttagcaatagaaatgagaaaacccaaggagaaagtacaagtgttgtgtgataacctttgttggttggtgatcaagttctctgaattggataaggcgaattctataaatttatcaaccccgatattatattcagcactagatctagatgttttcatccaatccttatccatggtaaattcaattaatattacctagtaacatagatgaaaatacagattgcaccattagtttataataatactaaaatatggggttaaatgaatcactgataaataatgcattactgcctatgcaagcatctaaaccatctccacatccagctcaacaccaaacatctactaaacagttcagttccattcaccaactaataaaaatcttttggtaaatataagagaccaaaaaagtattttatgaacattatttcactaagcataaacaagctagcacaggacaaccttgtaaaacaccctaaaaacacccaaattgggtcagtgtgacaaatgagaatatagtactatgggtagatgtgtatcagtgcatttagacaatactagattttttttaaaataaatattctgattcatgcataaataactgttattcatggaaaatcatttttctgtgtcaacttgtttagattcagatgatttgcatatagtgacgtgcttttggttgaaattcatcaagaacagtggttggtcaggctattgtagtatattggaagttggattgtttgatctacaggctgcactacacccTtttgcatgggaattatttcaatcagcataatacatagatctcaacaaccgcatgtaaccaaaatattcagtttgagtaatattcagattctccaaatataatacatcctataatcatttataatacgtcctataattttctacaaccatagatttatatacaggaatgatacttctgcaatatggtacttaggaagttccatgattcacaacagaacaactggtaactccaattttctaaattaactaatactaatgatatcgaatggtgatttcacactctagagcagactaggattAAaaaaatatatttaaaatctcaaactgcagggtaaaaaaacaataatagatcatatataaggagattctccagtaaaacattatgtattctagagctaataagtcaaaatagatcgatcatctcatgaaaaatcaaagtatacatcacatattttagttcatatactcacagtataaaggcagcaacggtagatcccaaggtggctcggctcgaccaggatgaagaaagtggaggcgcgactccggatccagcagggagagacggcaccgggactggagatggtgccggcggagggagcagcaagcgcccccctccccccgacgactaccctagcttgtttgaggcgcaagtgatctgcaagttttgggcatggaacgggagcgaagcaggctggtgtgtgtagatctggggagtagagcggcggcggtggcggtgacggtggcggtggcggcggcagacggcggcggcggcgccgcccggagtcgcaagcggcgatggatgattttttttttctagcgttttttcttctctcacgcgatctgatcgagaggataaggtttcgtatgtggtggatgagcacgtgtggtggaaggactattttatctaagtgaatttcttttaggttttttttgcatatataacagttttggaggcatttctgttccaaatgccttcgtttgtccaggcaattttgcaaaacgcccagatagtatgaaatattacggcgtttcatcatagtgccggtaatagataatttttctaaggcgttactgaaaaatgccttagaagcactgagtttttgaggcattcataataaaagtgccttcagatgacagacttttaaaggcataaactaaatttgccttgtaattaataTtttttgaggcatttttatcaaaatcgccataaaaggagatgatttgaggcagttttagataaatgccttcaacagaatgccttcaaatgcattccatcctgtagttttagataaatttagcgttagggcctaaattttatctggactcgaatgtagccgagccccgtttgcccacccacgtcttcaacaagccagccagtccggcccaaaacatttataggccggatggcctttgcctagcccagcggctccagcgtaccatccaaatctccacttccaggcggaatttggctgccgcgacgaacagcgcgcgaaaccacggcaacggtagacaaggatcccacgagtcacggaatcgcactgttccttcgcaacgaatcgcgtcgctgattctcccagtcgacatgaacgtctctcgccggacgccgaccgcagtgtcaccttttcctttccctctcgtcccttcttttcccctacgcacttgaccatcccgttgccggacctgcctgtgcctgggccacagcctcagaccaaccaaccaaccagtgcctgcctgtacacgagcacaggacggcagcagcagcacgagaggtagcag
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| CDS seq | atgtcgactgggagaatcagcgacgcgattcgttgcgaaggaacagtgcgattccgtgactcgtgggatccttgtctaccgttgccgtggtttcgcgcgctgttcgtcgcggcagccaaattccgcctggaagtggagatttggatgtcgtcggggggaggggggcgcttgctgctccctccgccggcaccatctccagtcccggtgccgtctctccctgctggatccggagtcgcgcctccactttcttcatcctggtcgagccgagccaccttgggatctaccgtaatattaattgaatttaccatggataaggattggatgaaaacatctagatctagtgctgaatataatatcggggttgataaatttatagaattcgccttatccaattcagagaacttgatcaccaaccaacaaagttgcaatctgccttatgatgcaaatggatacacatatgaacacaactttcaaactgaagatgacataataagcaatggaggatccgatgagggagatgactatgaagattactgtagctctgaagattgtgatgagactgaacctggggacaatttgccaccttatgctgacttggagcatgaaggtcaagttcatgaaatgctagaaagtacaaagaaaagtggaagaggccccacaatgatgagatcgctatggaaggaccttgatcacaatgagaagatcagattgaaattcaatcgatatggtcaaccttgtggattaaagacttgcaaattaaccaattttattggaactcttgtcaaaggcaaatatgtatccttggctgcaaagaattggagaaaggtacctgaagcaagcaagacgaaagtttggacatctgttcagggaatttttgacattgaggatcattacaaaccttggattttgaaatcagctagcaaaaagtggaaagattttaaagctgtcttgaagagaatgtacttcaattctgagttatcatggagacaaaatgtacttaatggctgccaagaaagaatccctataaaacaatgggcatggttggtgaggtattggaagactgaagcagctcgggaactggatcctatgaattgcatcaatcaagcaccatcactttcatccagaaacaagaaaacacttctacagtcacaggtgttcaagcacaatagcattgataatgcactgcaaagtgttgttggacacaagagagaggtgcatgatctaacaccaaagaagaatataggacgtgaagatacacattctagggcaaagaagattgggaaggccagacccgattctccatatgctaacttcaccaatagccaactgttaacaacttcccggttctag
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| Protein seq | MSTGRISDAIRCEGTVRFRDSWDPCLPLPWFRALFVAAAKFRLEVEIWMSSGGGGRLLLPPPAPSPVPVPSLPAGSGVAPPLSSSWSSRATLGSTVILIEFTMDKDWMKTSRSSAEYNIGVDKFIEFALSNSENLITNQQSCNLPYDANGYTYEHNFQTEDDIISNGGSDEGDDYEDYCSSEDCDETEPGDNLPPYADLEHEGQVHEMLESTKKSGRGPTMMRSLWKDLDHNEKIRLKFNRYGQPCGLKTCKLTNFIGTLVKGKYVSLAAKNWRKVPEASKTKVWTSVQGIFDIEDHYKPWILKSASKKWKDFKAVLKRMYFNSELSWRQNVLNGCQERIPIKQWAWLVRYWKTEAARELDPMNCINQAPSLSSRNKKTLLQSQVFKHNSIDNALQSVVGHKREVHDLTPKKNIGREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0029860 | OsGoSa_02g0029860.01 | Chr02 | 29784673 | 29790519 | - | NAM | ||
| CDS seq | atgtcgactgggagaatcagcgacgcgattcgttgcgaaggaacagtgcgattccgtgactcgtgggatccttgtctaccgttgccgtggtttcgcgcgctgttcgtcgcggcagccaaattccgcctggaagtggagatttggatgtcgtcggggggaggggggcgcttgctgctccctccgccggcaccatctccagtcccggtgccgtctctccctgctggatccggagtcgcgcctccactttcttcatcctggtcgagccgagccaccttgggatctaccgtaatattaattgaatttaccatggataaggattggatgaaaacatctagatctagtgctgaatataatatcggggttgataaatttatagaattcgccttatccaattcagagaacttgatcaccaaccaacaaagttgcaatctgccttatgatgcaaatggatacacatatgaacacaactttcaaactgaagatgacataataagcaatggaggatccgatgagggagatgactatgaagattactgtagctctgaagattgtgatgagactgaacctggggacaatttgccaccttatgctgacttggagcatgaaggtcaagttcatgaaatgctagaaagtacaaagaaaagtggaagaggccccacaatgatgagatcgctatggaaggaccttgatcacaatgagaagatcagattgaaattcaatcgatatggtcaaccttgtggattaaagacttgcaaattaaccaattttattggaactcttgtcaaaggcaaatatgtatccttggctgcaaagaattggagaaaggtacctgaagcaagcaagacgaaagtttggacatctgttcagggaatttttgacattgaggatcattacaaaccttggattttgaaatcagctagcaaaaagtggaaagattttaaagctgtcttgaagagaatgtacttcaattctgagttatcatggagacaaaatgtacttaatggctgccaagaaagaatccctataaaacaatgggcatggttggtgaggtattggaagactgaagcagctcgggaactggatcctatgaattgcatcaatcaagcaccatcactttcatccagaaacaagaaaacacttctacagtcacaggtgttcaagcacaatagcattgataatgcactgcaaagtgttgttggacacaagagagaggtgcatgatctaacaccaaagaagaatataggacgtgaagatacacattctagggcaaagaagattgggaaggccagacccgattctccatatgctaacttcaccaatagccaactgttaacaacttcccggttctag
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| Protein seq | MSTGRISDAIRCEGTVRFRDSWDPCLPLPWFRALFVAAAKFRLEVEIWMSSGGGGRLLLPPPAPSPVPVPSLPAGSGVAPPLSSSWSSRATLGSTVILIEFTMDKDWMKTSRSSAEYNIGVDKFIEFALSNSENLITNQQSCNLPYDANGYTYEHNFQTEDDIISNGGSDEGDDYEDYCSSEDCDETEPGDNLPPYADLEHEGQVHEMLESTKKSGRGPTMMRSLWKDLDHNEKIRLKFNRYGQPCGLKTCKLTNFIGTLVKGKYVSLAAKNWRKVPEASKTKVWTSVQGIFDIEDHYKPWILKSASKKWKDFKAVLKRMYFNSELSWRQNVLNGCQERIPIKQWAWLVRYWKTEAARELDPMNCINQAPSLSSRNKKTLLQSQVFKHNSIDNALQSVVGHKREVHDLTPKKNIGREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0029860 | OsGoSa_02g0029860.02 | Chr02 | 29786659 | 29787095 | - | IsoSeq | ||
| CDS seq | atggaactcacaccactggttcacgaggttttgcagttgttcttgatcaaacggagcttaaagagaacagaaaagttggacgggctgaactct |
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| Protein seq | MELTPLVHEVLQLFLIKRSLKRTEKLDGLNS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 64.514633 | 13.642412 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0696600 | RBH | 10.945469 | 14.081266 | 4.344004 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46920 | RBH | 6.242736 | 6.248790 | 1.398373 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0435200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029960 | RBH | 4.617792 | 18.945438 | 16.862907 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030030 | RBH | 1.344943 | 4.817396 | 6.770451 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029890 | RBH | 9.391886 | 16.587772 | 34.958527 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029490 | RBH | 1.624338 | 0.340346 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029710 | RBH | 33.035351 | 33.208584 | 49.869167 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0465600 | RBH | 21.5811235 | 39.0605755 | 51.013592 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029510 | RBH | 1.806395 | 0.509154 | 3.589643 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0493200 | RBH | 19.9584885 | 43.8870715 | 30.4471865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029800 | RBH | 2.722230 | 0.258104 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029550 | RBH | 3.206371 | 19.369757 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029700 | RBH | 5.837626 | 2.379966 | 3.813101 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029380 | RBH | 3.031726 | 11.890450 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029950 | RBH | 3.510488 | 2.912572 | 5.469629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029720 | RBH | 18.657537 | 61.609947 | 25.901598 |
