Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0027560 | OGI:02075340 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:27823636-27825005 | ||||||||
| Gene Symbol | TIP2;1, OsTIP2;1, TIP2-1, TIP2 | ||||||||||
| DNA seq | agatataatagatagatagatagatagatagatagatagatagatagattatcttagccagaaaagggacatggcttccaaatttcctggtacaaaccaaatctaatgcaaattgatcttatcaattgtgtcgatgaaattttacaattttgatttCCCcttccagacaacaatcgcagaaagtgaccttttacatgtaccgtgtttgacaaaaagaaggtaaaccggaaaatacaaagcctgtgaacgtatcacacacgacgaatatcaaatcaagcaaacgtacgatgcatgcaaactgacacggatacttcaattaattcggttcatccacttttaagcgtagtcctggtcggcaacgggctggtatgagccgatgaacacgtcgccgtacacgagcccggcgaggccgccgccgatcagcgggccgacccagtagacccagttgccagcgaagttgccggcggcgacggcggggccgaaggagcgcgctgggttcatggagccgccgctgaacgggccggcggcgaggatgttggcgccgacgatgaagccgatcgcgatgggcgcgatggtgccgagcgatcccttcttcgggtccgccgccgtggcgtacaccgtgtacaccagcgcgaacgtgatgacgatctccatcacgacgccctccagctcgctgatgccggcgacgccgtgcgtcgggatggcctacacgcgttcggatatcaaattcaccggttaatcacgctgtccttcttgtcgggaaatatatacacagcagtttaaatctaagcctttaatctatggcgatggtgtgcgtgctgaccttgccgtgggtgacaaacttgaggaggaggcaggcgatggaggcgcctagcagctgggcgatccagtagaagagtccggtgaggatggtgatgtggccgccgacggcgaggccgaacgtcacggccgggttaaggtggccgccggagatgttggcggcgacggaaacgcccacgaacagggcgagtgcatgggcgatcgcgatcgccacaaggccggccGggtcgagggcgccaccattggtcaattgccctacacaaaccaagccgtcggtaggtcagaaatgaaacatactactgtacatatcaaaccggaaaatgcgttgagctcaccataggcaatggcggatccgacgccggcgaagacgaagaggagggtggcgatgaactccgccacgtaggccttcacggacgtggcgctgaaggagtcacccaagcttccgaatgcgagcttcaccatttttaatctatattttttttccttattactctgataagtgtggagaggtctctacgcttgagagagagcttggcgattactgatgtggc
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| CDS seq | atggtgaagctcgcattcggaagcttgggtgactccttcagcgccacgtccgtgaaggcctacgtggcggagttcatcgccaccctcctcttcgtcttcgccggcgtcggatccgccattgcctatgggcaattgaccaatggtggcgccctcgaccCggccggccttgtggcgatcgcgatcgcccatgcactcgccctgttcgtgggcgtttccgtcgccgccaacatctccggcggccaccttaacccggccgtgacgttcggcctcgccgtcggcggccacatcaccatcctcaccggactcttctactggatcgcccagctgctaggcgcctccatcgcctgcctcctcctcaagtttgtcacccacggcaaggccatcccgacgcacggcgtcgccggcatcagcgagctggagggcgtcgtgatggagatcgtcatcacgttcgcgctggtgtacacggtgtacgccacggcggcggacccgaagaagggatcgctcggcaccatcgcgcccatcgcgatcggcttcatcgtcggcgccaacatcctcgccgccggcccgttcagcggcggctccatgaacccagcgcgctccttcggccccgccgtcgccgccggcaacttcgctggcaactgggtctactgggtcggcccgctgatcggcggcggcctcgccgggctcgtgtacggcgacgtgttcatcggctcataccagcccgttgccgaccaggactacgcttaa
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| Protein seq | MVKLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVAGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDYA |
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| Function | Probable aquaporin TIP2-1 [UniProtKB/Swiss-Prot:Q7XA61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0027560 | OsGoSa_02g0027560.02 | Chr02 | 27823721 | 27825005 | - | NAM | ||
| CDS seq | atggtgaagctcgcattcggaagcttgggtgactccttcagcgccacgtccgtgaaggcctacgtggcggagttcatcgccaccctcctcttcgtcttcgccggcgtcggatccgccattgcctatgggcaattgaccaatggtggcgccctcgaccCggccggccttgtggcgatcgcgatcgcccatgcactcgccctgttcgtgggcgtttccgtcgccgccaacatctccggcggccaccttaacccggccgtgacgttcggcctcgccgtcggcggccacatcaccatcctcaccggactcttctactggatcgcccagctgctaggcgcctccatcgcctgcctcctcctcaagtttgtcacccacggcaaggccatcccgacgcacggcgtcgccggcatcagcgagctggagggcgtcgtgatggagatcgtcatcacgttcgcgctggtgtacacggtgtacgccacggcggcggacccgaagaagggatcgctcggcaccatcgcgcccatcgcgatcggcttcatcgtcggcgccaacttcgctggcaactgggtctactgggtcggcccgctgatcggcggcggcctcgccgggctcgtgtacggcgacgtgttcatcggctcataccagcccgttgccgaccaggactacgcttaa
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| Protein seq | MVKLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVAGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDYA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0027560 | OsGoSa_02g0027560.01 | Chr02 | 27823636 | 27825005 | - | NAM | ||
| CDS seq | atggtgaagctcgcattcggaagcttgggtgactccttcagcgccacgtccgtgaaggcctacgtggcggagttcatcgccaccctcctcttcgtcttcgccggcgtcggatccgccattgcctatgggcaattgaccaatggtggcgccctcgaccCggccggccttgtggcgatcgcgatcgcccatgcactcgccctgttcgtgggcgtttccgtcgccgccaacatctccggcggccaccttaacccggccgtgacgttcggcctcgccgtcggcggccacatcaccatcctcaccggactcttctactggatcgcccagctgctaggcgcctccatcgcctgcctcctcctcaagtttgtcacccacggcaaggccatcccgacgcacggcgtcgccggcatcagcgagctggagggcgtcgtgatggagatcgtcatcacgttcgcgctggtgtacacggtgtacgccacggcggcggacccgaagaagggatcgctcggcaccatcgcgcccatcgcgatcggcttcatcgtcggcgccaacatcctcgccgccggcccgttcagcggcggctccatgaacccagcgcgctccttcggccccgccgtcgccgccggcaacttcgctggcaactgggtctactgggtcggcccgctgatcggcggcggcctcgccgggctcgtgtacggcgacgtgttcatcggctcataccagcccgttgccgaccaggactacgcttaa
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| Protein seq | MVKLAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHGKAIPTHGVAGISELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDYA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0027560 | OsGoSa_02g0027560.03 | Chr02 | 27823740 | 27824822 | - | IsoSeq | ||
| CDS seq | cttcgccggcgtcggatccgccattgcctatgggcaattgaccaatggtggcgccctcgaccCggccggccttgtggcgatcgcgatcgcccatgcactcgccctgttcgtgggcgtttccgtcgccgccaacatctccggcggcca |
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| Protein seq | LRRRRIRHCLWAIDQWWRPRPGRPCGDRDRPCTRPVRGRFRRRQHLRRP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1084.741577 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0658100 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44080 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0658100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027720 | RBH | 0.000000 | 1082.386719 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027820 | RBH | 0.0 | 441.615997 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027660 | RBH | 0.0 | 1168.084106 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0027270 | RBH | 0.0 | 19.267113 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027380 | RBH | 0.000000 | 755.000305 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0432600 | RBH | 0.041983 | 13.069549 | 0.0231855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027180 | RBH | 0.068987 | 33.222702 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0460400 | RBH | 0.1298215 | 0.8517855 | 0.0199715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027510 | RBH | 0.0 | 7.468578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027200 | RBH | 0.0 | 433.850037 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027400 | RBH | 0.0 | 80.055748 | 0.357283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027090 | RBH | 0.0 | 380.469879 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027680 | RBH | 0.0 | 69.540268 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027440 | RBH | 0.0 | 606.248718 | 0.0 |
