Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0021000 | OGI:02059950 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:22061451-22063211 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgcccgcgctcccccgccgcctcctcccctggctccggaccccaccttcctcctcctccgccgccgccttctcgtcggcgccctcccgaggctgcccgctccacgccgcgctcgcccgccgcggcgccccggcggccgcctccctcgccctgtacgcccgcatccgcgaggaggcatcgccgcccaccccgttcaccttctccctcctcctcgccgccctcgcgtcgtcgtcgtcgtcttccccgtccccttctccgtccgcaggctgcgcgcgcctcgccgccgcgtgcctcgcccacgctcaggcgttcaagtgcggcgcgctcgcgcaccccgtcgtcaccaactccctcctcaagctctactgctcgctgggcctcatcgaccgcgcgcgcagggtgctctactccggtggtgccgcgctggacgtcgtctcgtggaacacgatggtgtccgggtacggcaagggcggggacctgggcgctgcgcgggaggtgttcgccagaatgcccgagcggaacctggtttcctggagtgccatggtggacgtgtgcgtgcgtgccggggagtttggggaggctttatgggtgttcgatcggatgatgcgggaggaattcaggccagatgtggtggtgctggtgagcgtgctcaaggcatgcgcgcatctcggcgccgttgaaagggggcgttgggttcataggtatctggagacagggagttttggaggtaggcgtggaaatctcatgcttgagacagctcttgtggacatgtactgcaaatgtgggtgcatggaggatgcctggcaagttttcgatggagttcatcgtcgcgatgtggtgttgtggaatgcgatgatcggtgggcttgcgatgaatggctatggtgagcgtgctctcgagttattccgaaggatgcttcagaagggtttcatgccaaatgagtcgacgtttattgctgttttatgtgcatgcacccatacagggcgtgtggacgaagggaaaagggttttcaagtccatgcaggattatggcattaagccacaaagggagcactatggatgcttagctgatctccttggccgtgcagggaatgtagaagaagctgaagctctgttactggatatgccaatggagccacatgcttctcaatggggtgcactcatgtcatcatgccaaatgcacaatgacatcaatgtgggtgagcgtgtgggtaagcggcttattgagctagagccatatgatggtggccgttatgttgttctattcaacctatatgctgtcaatggtcgatgggaagaagcaaggaccattcggcagatgatggaggataggggagccaagaaagaaacaggtttgagcttcatagagttaaatggtttggtccatgaatttatttctggggatacaagacatcctctcacaaggaaaatctatgcactattggaagatatagagaggagattgcaactaattggctatgttaaggatacaagccaggtgattatggacatggatgatgaggaagataagggcatcgccctatcctaccacagcgagaggctggcattagcatttggtatcttaaacattccccagggcgttcctattcgtattgtcaagaaccttcgagtgtgccgtgattgccatgtgcattccaagcttgtgtccaagctctacgagcgggagatcattgtgcgtgaccgtcatcgtttccatgtgtttcgtgatggagtatgctcatgcaatgactattggtga
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| CDS seq | atggcgcccgcgctcccccgccgcctcctcccctggctccggaccccaccttcctcctcctccgccgccgccttctcgtcggcgccctcccgaggctgcccgctccacgccgcgctcgcccgccgcggcgccccggcggccgcctccctcgccctgtacgcccgcatccgcgaggaggcatcgccgcccaccccgttcaccttctccctcctcctcgccgccctcgcgtcgtcgtcgtcgtcttccccgtccccttctccgtccgcaggctgcgcgcgcctcgccgccgcgtgcctcgcccacgctcaggcgttcaagtgcggcgcgctcgcgcaccccgtcgtcaccaactccctcctcaagctctactgctcgctgggcctcatcgaccgcgcgcgcagggtgctctactccggtggtgccgcgctggacgtcgtctcgtggaacacgatggtgtccgggtacggcaagggcggggacctgggcgctgcgcgggaggtgttcgccagaatgcccgagcggaacctggtttcctggagtgccatggtggacgtgtgcgtgcgtgccggggagtttggggaggctttatgggtgttcgatcggatgatgcgggaggaattcaggccagatgtggtggtgctggtgagcgtgctcaaggcatgcgcgcatctcggcgccgttgaaagggggcgttgggttcataggtatctggagacagggagttttggaggtaggcgtggaaatctcatgcttgagacagctcttgtggacatgtactgcaaatgtgggtgcatggaggatgcctggcaagttttcgatggagttcatcgtcgcgatgtggtgttgtggaatgcgatgatcggtgggcttgcgatgaatggctatggtgagcgtgctctcgagttattccgaaggatgcttcagaagggtttcatgccaaatgagtcgacgtttattgctgttttatgtgcatgcacccatacagggcgtgtggacgaagggaaaagggttttcaagtccatgcaggattatggcattaagccacaaagggagcactatggatgcttagctgatctccttggccgtgcagggaatgtagaagaagctgaagctctgttactggatatgccaatggagccacatgcttctcaatggggtgcactcatgtcatcatgccaaatgcacaatgacatcaatgtgggtgagcgtgtgggtaagcggcttattgagctagagccatatgatggtggccgttatgttgttctattcaacctatatgctgtcaatggtcgatgggaagaagcaaggaccattcggcagatgatggaggataggggagccaagaaagaaacaggtttgagcttcatagagttaaatggtttggtccatgaatttatttctggggatacaagacatcctctcacaaggaaaatctatgcactattggaagatatagagaggagattgcaactaattggctatgttaaggatacaagccaggtgattatggacatggatgatgaggaagataagggcatcgccctatcctaccacagcgagaggctggcattagcatttggtatcttaaacattccccagggcgttcctattcgtattgtcaagaaccttcgagtgtgccgtgattgccatgtgcattccaagcttgtgtccaagctctacgagcgggagatcattgtgcgtgaccgtcatcgtttccatgtgtttcgtgatggagtatgctcatgcaatgactattggtga
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| Protein seq | MAPALPRRLLPWLRTPPSSSSAAAFSSAPSRGCPLHAALARRGAPAAASLALYARIREEASPPTPFTFSLLLAALASSSSSSPSPSPSAGCARLAAACLAHAQAFKCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDVCVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW |
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| Function | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic [UniProtKB/Swiss-Prot:O82380] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0021000 | OsGoSa_02g0021000.01 | Chr02 | 22061451 | 22063211 | + | NAM | ||
| CDS seq | atggcgcccgcgctcccccgccgcctcctcccctggctccggaccccaccttcctcctcctccgccgccgccttctcgtcggcgccctcccgaggctgcccgctccacgccgcgctcgcccgccgcggcgccccggcggccgcctccctcgccctgtacgcccgcatccgcgaggaggcatcgccgcccaccccgttcaccttctccctcctcctcgccgccctcgcgtcgtcgtcgtcgtcttccccgtccccttctccgtccgcaggctgcgcgcgcctcgccgccgcgtgcctcgcccacgctcaggcgttcaagtgcggcgcgctcgcgcaccccgtcgtcaccaactccctcctcaagctctactgctcgctgggcctcatcgaccgcgcgcgcagggtgctctactccggtggtgccgcgctggacgtcgtctcgtggaacacgatggtgtccgggtacggcaagggcggggacctgggcgctgcgcgggaggtgttcgccagaatgcccgagcggaacctggtttcctggagtgccatggtggacgtgtgcgtgcgtgccggggagtttggggaggctttatgggtgttcgatcggatgatgcgggaggaattcaggccagatgtggtggtgctggtgagcgtgctcaaggcatgcgcgcatctcggcgccgttgaaagggggcgttgggttcataggtatctggagacagggagttttggaggtaggcgtggaaatctcatgcttgagacagctcttgtggacatgtactgcaaatgtgggtgcatggaggatgcctggcaagttttcgatggagttcatcgtcgcgatgtggtgttgtggaatgcgatgatcggtgggcttgcgatgaatggctatggtgagcgtgctctcgagttattccgaaggatgcttcagaagggtttcatgccaaatgagtcgacgtttattgctgttttatgtgcatgcacccatacagggcgtgtggacgaagggaaaagggttttcaagtccatgcaggattatggcattaagccacaaagggagcactatggatgcttagctgatctccttggccgtgcagggaatgtagaagaagctgaagctctgttactggatatgccaatggagccacatgcttctcaatggggtgcactcatgtcatcatgccaaatgcacaatgacatcaatgtgggtgagcgtgtgggtaagcggcttattgagctagagccatatgatggtggccgttatgttgttctattcaacctatatgctgtcaatggtcgatgggaagaagcaaggaccattcggcagatgatggaggataggggagccaagaaagaaacaggtttgagcttcatagagttaaatggtttggtccatgaatttatttctggggatacaagacatcctctcacaaggaaaatctatgcactattggaagatatagagaggagattgcaactaattggctatgttaaggatacaagccaggtgattatggacatggatgatgaggaagataagggcatcgccctatcctaccacagcgagaggctggcattagcatttggtatcttaaacattccccagggcgttcctattcgtattgtcaagaaccttcgagtgtgccgtgattgccatgtgcattccaagcttgtgtccaagctctacgagcgggagatcattgtgcgtgaccgtcatcgtttccatgtgtttcgtgatggagtatgctcatgcaatgactattggtga
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| Protein seq | MAPALPRRLLPWLRTPPSSSSAAAFSSAPSRGCPLHAALARRGAPAAASLALYARIREEASPPTPFTFSLLLAALASSSSSSPSPSPSAGCARLAAACLAHAQAFKCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDVCVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVIMDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.337720 | 5.948292 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0552100 | RBH | 0.492587 | 0.309752 | 0.521228 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g34700 | RBH | 0.362603 | 0.364141 | 0.174454 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0552100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020890 | RBH | 0.000000 | 0.0 | 0.439506 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020980 | SBH | 0.044610 | 0.0 | 0.346830 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0020960 | SBH | 0.178903 | 1.039379 | 2.142474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020710 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020620 | SBH | 4.813201 | 6.521983 | 3.167610 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0343600 | RBH | 0.633975 | 1.7329575 | 1.2364055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020330 | RBH | 0.054943 | 0.0 | 0.174965 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0368800 | RBH | 0.757119 | 1.2539675 | 2.702005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020830 | SBH | 0.174450 | 0.055256 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020570 | RBH | 0.103578 | 1.715519 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0015810 | SBH | 0.0 | 5.371668 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020700 | RBH | 0.052336 | 0.0 | 0.130726 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020530 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020970 | RBH | 0.089031 | 0.505068 | 0.081401 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020720 | SBH | 0.000000 | 13.067569 | 0.000000 |
