Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0020770 | OGI:02059320 | 3/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:21780146-21787477 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatggcgtttcttggtttgccgccgtccatgcgctgccgtgcgccgtagccgcctgcggggtgttcgccggagctctccgcaccttccccggccgctggcctcgcgccaacccggcctcacccggctgcatcctcccctgctgcttccgctcgggctggactgctggaggttgaagacgactcccttctgagtcgctgacgagctaggcccacctccatcttctcgatagaaaaataatttggaacaaagaaaatcaaggcctgaccccatttgtcagtccggtagctgtggatgggatttcggattaaaataaatcaattaggaacagtaacttttcgctatttctcggattaattcaaatttgagtctttaaactagcataacttattcattttaactccaatttgagtgaaacttaaacctaaattcataagcttcccaatggtatataactcactatttaataaaatatatttataattattaaataattaatatcaaatgattagataatgattaaactaaaaatgtgctagcaaataaaaattatcattgtacagtgaactaggtagaggaatatttgttgttagcatgttctgtcactatgggagaaccatgtgtagctatatgtattagttcaatttaaagcaaagataggacatattagtatcatttattattccatgattatatatagtcaagttcatgatttagtcattgtctaaatagaggattaacttaatgagtttataactaaaaatctaagtacacacatatcacagtccttagtttgtccatgaggtataataacagagctgggtgtgatggaatcaatcgaatgatatatttaacaagtgcaatatcctatatagtagtatatatataatttggttgacacctattatttaacagaacaataaataactcatgttcggtaaatgatccaatattaacatattattgaactcgcatgtatagtacatctatttaacacatacacagtaagtcaatcacctacttttgcacctattaaactatgaattgttcgataaacAtcaaagttagatAaaacactaattataaatcttgacctcgttacgagaccacacagacaaataatatgtacttataacctcacagatctaacatatagagcatggatgattattaacccttttataatttataatgacaagtaaaatatgatcataattaaaataatgccccattggtaaaataataatataaatgattccctgtgattgcttgttgatcctaattaaattaatccatccaacgacAgaacctttagtatataaccattttacttgaatagatgcatgcgtagtcatataaccctcccataaccctatagctagactaaaccacatagtagcactgtatatctcatatattatgctagtagtaccaatagagccatcaggacaatataaaatactaagaaaacttagcccataagctttcttgtctcatcagctgcttgcatgctaagtaatttagagcctaagctacctcaattttccttacctatataaactgtgcagccatagtagagacttcgtagcaccttacaatccattagcaaacacagtaaaatgagcaaccctaggtacgacccaacaattatattttgtttgtgcatattgattgttgctttaatattggtttctctcgcgtattatagtattggtgtatcgattagtcgtgaggcaacatatgcaagcttccaggaggtgaaggttgatcaagattatatcaagaataggaactatcctgagcaggcaagtcatcactaatctttgagcatgttgaacccattgcgaacttattttggatttaaaataaagtttgcatgctatatggatatacgtgaatgtcctactttgttatatgccatgcctttgatattgatgacccatgcaatccttgtaatccataatatcgtgtgtctttactcaatactttataaatgcttagccatgctactttagaatcatgcatattcatatttatcaaaatgctttatgcttgggcaactacctttgggaaggtggttgagatgcagcatgtggagacatgagtgccacattgccatgacattggtgacatgatttgtgaaaggaaaaataaaactaaacaactgttttcgactggggcggctggatgacttgggtggagtccggtaaaggctagtgccgtccctggtcaattaaggaccgagccatgaagttaagcatgaaacgaccttagtacaaccgtacttctcgtgtgggtatagacctagcaaagtaaatagccgagcggaggcggtacccaagccgtagtggttttcttgttgtgtgtgaggcagggactacggtggggcagccattggtaggaccacgaggggcgggtgcctacagtggtgtcaccatcggtaggactgccatgtgtaaacataaacttaactataacttaactcctctcactgctagaaatcttggacgcctagagtgcatgaggactaaagttgatggagcaggtactgccaaagtgaggttatggaaaggctttgccgtggcaagtctcattcgttgggatgtaggctcatgtgttgggcaagtcgcggagtacgggtaaagtgtacatccactacagtgtgagtaaatcaatctattcgaatagccgtgctcgtggttattgagcaccgggacgtgtattacacttggctagactctaatttcttaatctgattgggatgggatatgcatgatgattttgtgctgatggatcaacttctcgagaggcgagaaggggtagaccccagaaaaccatgacgaccagtggcgggaagctatccttgggaacacaatggatggtggacagaaccgtcgttgtttaatgaaccatggagttaaaacttgatcagtttatgctaggtcttaggtttgtgaaatgatatttgaaaactcagctttacgcaaagtaaccatagccaCTccttgtattatcctgtacattactgcattttgtgtggtggcttgctgagtacttttgtactcactgttgctctatatataccttttagcagagtgttgaagagaagcccttgttagtacgcttgcgtacctagcaagatgatcggagtgcagttccattctaggtctcgttccctagtcgactgcttgtggcatgtcaaccaggcccttgtattattttgtcttccactgttgttctctgatagttgttggcctgcctggccctaatgtaagcatttaactctcttagcctgaattcattcgtgatatgttgtgattcagctatgtaTGtgtgtaccaactactgatccagggattggtactgataaacacagaagatttccgatttccAaaatcgagggtcgacagcgcaaaaggattgcacgtcaatatattagaagaaaAGGaattttgttacacgccgcaaacagccagactggcttatgccaagaaaagggggaaaACataaccaaagaaaagtaagagactactacgacggcgaaacgcaactccaatcagctgggaggagggcagagccccgctacactcgcaagaaatccccaaaagaagcaacaccagctaacgaccacagacgaccctccgagaggatggactctagaacaactaagaccgaagagagcgcggagtcgaagaccctagagttatgtttcttccacaacttccaagagacaaggaggacttgggagtcgaagtcggcacagagatacgtaggtaagcaagccctagaagatggccaccagtcctggagctagtttccacggggaggagaaagggcagcccaaccaggaggcgacagcacacagagccaaacctgccgagcgaacacgcagtctaggagaatgtgtttcgccgtctcaagctcctgagcacaaaaggggcaagccgagttgctatcgataccacgcttctagaggagatcggctgtccagcagcgctgctgaaatgcaaaccagaggaataacttgcatttagcaggacccttcacgtgccaaagaagatcagcacaggcgaaggagtgttggccatagaagaacgcctggtacgctgaacgcaccgtgtagcactggttactcgtccaacacCAaacaagacgatctccaacacctggcgagagccgaatgtgaagcaccgcatcccaagccaGaagaaactgggagatgaccaggacaatgagggcgccaccgatgtcagaaacccaggaattgttcaccaggccagaagcaaccgtgtgcgaacttcggagtcgctggggcacaacgaagagaaggtctggagccaaagaggccaccgatccaatggtcagaccagaagagcatcgactcaccatctcctagcacaaagaaggtggacgcctcaaacatgtcgGAgacggtccgctcaactggggccttcaggcaatcctagtagggatgccctaagcgctgaagccggagccagcaaacacgcagggcaaaccctgccatcctgaggtcaggaattcccagcccaccaaaagctttgggacgacagacgttcatccaagatacccggcactgccccccatgagctgagtctgtacccgtccacaggaaggctcgacgcttcttgttaatggctttaataacccagacaggaaggccgatcgccatagacacatggaccggaatggaggagaggacagactggaccagcacagagcggccggccagtgtggtgagacgtcccttctaggaggaagccgatgggagactttgtcaacaagcggttgcagggccaccttcggcaacttgcgaacagatagcggaatgtcgaggtaggtgcaagcaaaatcagaaatcgtgcaggggaagcaagattgaactagctctaggtcctcggccgagcaacggatcgaagtaatcgagcatttggcaaaattggtgcgcagcccgaaagctgcaccaaagacagaaaggatgcactggatgaacccaagatcctgtcgaaccggggagaggaagagaactagatcatcagcatagagggaggcgtgaggtcgcaaggcacgatcgttaagctgaaggaacccgcccgagtcggaggccttacagagcatcacattgagcacatccatgactagaatgaagagtataggggatagaggatctccttgccgaagaccccttcggtgagggaagcgtggaccaggcaccccattgatcagcactcgggaagaggaggcactgaggatgagggagatccaatcccgccaacgctaactgaacccgagatgagcaagcacctgaagcaagaatggccaactgaccgtgtcaaaggcctttgcgatgtccaccttgagaaggaggcggggagtgcgcctggcatggagggcccttgccgcgagttggacatagcgaaagttgtcgtggagggatcgacctttgacgaaggcactttgattggccgccataagcccgtcaaggtggggagagagacgggaagccaggatcttggagaacaacttcccaaagctgtggatgaggctaatcggtcgaaaatccttgacgtcaacgaccacatccttctttggcagaagggagataagggcatcattaagggaggcaaatccccggcctttagtcAaaaagagggagttgagagctgccAAGacctccgacttaatcaccgaccagcaagtcttgtataaccgacccgtgaacccatcaagaccaggcgccttgtcagaaggcaaagacttaatcaccgcccacacctcctcctccgagaacgggtcatctagccccccaagctgcatagggctgaggcccaagggagtgaaggtcaagagcgagatcacgctcaacgcatgtccccaagatagatccaaagtgagtggagacgagctcttaaagctctcatcatgtgaaacggtgagctggtctccatctcaaaggcgagtgatgaagttctttcgctttcaggccctagcgtgatagtggAaaaacttggtgttagagtcaccctccttgagccagatcaagaacgaacgctggcaagctatggtgcgctcaagagaggcaagcccgaggcgtttcagcttcaagtcccgccacaactaggtcgccaagggagaaagagaccggttctcttgcatgacatcaagtcggaagacaagctccttcgccatctgaaggtggagacagacgctaccgatgtgacggtcgccccagctctgcaagcgcttagctgtgttggtgaaacaccaggcaagcgcggcgagagggggaaggttggacggaggttgccaagcgtcctgcacaacttgaaggaagccgtcgaacttgggccaaatggcttcaaaccgaaagctctcagcgaatcgatgcaggaatgaagcaggagagcacagtgatcaaaggcaacagaggaggcttcttgaagaagacatgggggaaagagctcctcccaatccgcagagaagaaaacacgatctagcttgacgagcgtaggagagtcatgctcgttgctccatgtgaaacgacggccgtgaagcggcaactcccggaggtccaactcatcgatcaatcgacgaaagtggcccatcattcggcgattgagattcaagttgttctcgtcctgggagttgaggataaggttgaaaccgcctgcaacagcccacagacctgagcgagaggatcgtagcatccgaagctcatccaggaccAaagtttctttggttcttcctatggcccatagacgatggagagccaccagggggcatcatcggagtggtgccgaaccaacgcggtaagagataattccgcaaggtgaacatccgagaccgactagatggccgtccaccaggcaagcaacacacccccaaaccgaccaacagcaggcaagaaagaataatcaaactcaaggcctaacatttccagaataatacgagacgggattacatccatttttgttttctcaagacagagaagagagacccgctcgtcgtgaaccacatcacaaaccgcatcccggcgggcgcgagagttcagaccccgcatgttccacaccaaaatgttctcattacatgatcccatagaaaagagaccacgcagagaaggggaagacaagggaaagggtcaaccgcaggcagacaacatctcaatcgcctgcgtaggaggcagcgagctagagaggagtgcagagagggcgatgatgtggtcctgcgagaggggctcagtgaagagagcgtcgaagtctgccaaggcctgtgccaggaccggaccctcgtcgggcaccatcccgagcttgcgcat
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| CDS seq | atgcgcaagctcgggatggtgcccgacgagggtccggtcctggcacaggccttggcagacttcgacgctctcttcactgagcccctctcgcaggaccacatcatcgccctctctgcactcctctctagctcgctgcctcctacgcaggcgattgagatcgactcagaagggagtcgtcttcaacctccagcagtccagcccgagcggaagcagcaggggaggatgcagccgggtgaggccgggttggcgcgaggccagcggccggggaaggtgcggagagctccggcgaacaccccgcaggcggctacggcgcacggcagcgcatggacggcggcaaaccaagaaacgccatga |
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| Protein seq | MRKLGMVPDEGPVLAQALADFDALFTEPLSQDHIIALSALLSSSLPPTQAIEIDSEGSRLQPPAVQPERKQQGRMQPGEAGLARGQRPGKVRRAPANTPQAATAHGSAWTAANQETP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0020770 | OsGoSa_02g0020770.01 | Chr02 | 21780146 | 21787477 | - | NAM | ||
| CDS seq | atgcgcaagctcgggatggtgcccgacgagggtccggtcctggcacaggccttggcagacttcgacgctctcttcactgagcccctctcgcaggaccacatcatcgccctctctgcactcctctctagctcgctgcctcctacgcaggcgattgagatcgactcagaagggagtcgtcttcaacctccagcagtccagcccgagcggaagcagcaggggaggatgcagccgggtgaggccgggttggcgcgaggccagcggccggggaaggtgcggagagctccggcgaacaccccgcaggcggctacggcgcacggcagcgcatggacggcggcaaaccaagaaacgccatga
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| Protein seq | MRKLGMVPDEGPVLAQALADFDALFTEPLSQDHIIALSALLSSSLPPTQAIEIDSEGSRLQPPAVQPERKQQGRMQPGEAGLARGQRPGKVRRAPANTPQAATAHGSAWTAANQETP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0339600 | SBH | 0.0608835 | 0.115267 | 0.009679 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0364300 | RBH | 0.5333705 | 17.164528 | 1.051662 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022270 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009620 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
