Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0007310 | OGI:02015600 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:5233929-5240565 | ||||||||
| Gene Symbol | CS1, OsCS1 | ||||||||||
| DNA seq | gaaaatgaattgcacttgtaaattcaacaaaaaaaaaatccttgaagagtaggttatatgtaccgtaaccagcaattggtatattaactcgagcaaacttaaaatgctcgaaaaagttgttcagcaacgaacAaaaaaaaaagctctaagcaaattaaaactaatcacattgttgcccaatggcagataaactttgagcataccaactgacgacggttacaaaatcctaccagctgagagcatcttcctcttgtttattggcccgggggaaaaaagggtaaaatgcggctaactctttcgagtttatgctcagttattagcatcaaagatgctcaaagagtaaaaaaaaaaaaaaacgcagccgtgtaggcgtgtgtagcttcaagcagcaaccttcttgcagtggttctccagccactccatggtgacactcttcggtctttcgagcggcaggccaagagcacggtcccaaatgagctgcgacacagataatgtgaaagaattggttgatagaatgaagaaggatcctctgcattgtagtacaaaatgcagagaagatccaaagaaatgaggtagaaagtggaaagtgagagatacctgagatcctattccaatgctccttgaaactccgaaaagaacagtgtaatacctgcgcagttagagaagttttcttaagtactcgttctaaagttagatttgctactctatcataagttcaagattaaattagacatggcattagattgtttaaccaatacagataaacataccgagcttcagataatccaaagtggttcagtagaactccgctgtgagcatcaacattaggccatgggtttttgacctgaaaatgtgaaggatgttcttatttcttagccaatgagatggaagaaaactgaaggagccgtaattaaaggagcaataattattgatcaatctagtagcattaccttgccaagctcagtgaggataggaggcacaacttcatacaacttggagacctgaaagaggataggtcgatataaatcctattgagacagtgggactgaagagagccatgcagctagaatttagactaaccagttggaaaagtggatcctcaggcaagtacttcaaagcaaactccctctgacatgtataccgtggatcggtcttacgtagaactccatgaccaaagccaggaacaacctacgaatgaatgtgtcatggcatactatctgtgaatttttcagttagagttcaacaaaaagagaatgtttattccagatcattagaaatcatttgtttgtataatataagtagctaaagaaaacagatccaatataacataacaaacttagaaccactgcttagcaatgaactctcagaaagttgagttttcatttcagttaaaacatgatgatatgcacttcctcatcaaatagaaatataacacggagataagctacctttccactttttagtgtcttccacacatactctttgagttgatcagttgtaacgtcactaccagtctcacctattacagatttgatccacaacaacacttcctgcattggatgtgaactatggttagttcacacacacacactaaaatatcaatttaaaaatggaaggaacattatgttccttcttccaaagataatctgcgacatattttgagtatgcaatgcagtgaatccttgtttagcaggatgtggcagagaagatccagtacaacaaactgagcatacctgattagccaggccgtgcaacggtccagctaaaccattcagtgcagctgcaaaagaaagataagggtctgacagagcacttccaacctgtaattgaatatcatgagcacggaatgaagaggtcagtgcccatagatgagtcatgagagagagagagaggcaattgccaacaaaagaaaaTaagtcatagatcataagtgataaatcctaaagataacggattgcaaggttttctgcggcaaattaagaggctaccttgtactatcattaccacttctaccttgaagatagagattcagctaactggatcaaggatcacagcgcaaccaattatattacctttcctaatgcattaaaaggccatactgatacaccaggattttcctagacatacaatagctatctagcagaaatagatacatattttcagtcatagctttgatgctattagacaataaaatgtaagactaatgactccatgagtactaagcagatgatccttcaagataacagttaaagtaatgaagaactcagctaaaagcagtttaagttttagttttgttcctagttcatattccttaaaatggctagtttggtttatcagtgcttattaatatatctccgatacatagtaataacagcaaagcaaatcaaaggcttaaagtggcatccagtgcaatagtgcatgccaaaagtgtaacatatgtaaaaaggcacaaggatgatgtagcagccagaaatgatccattggcaggtttacaacaatagtggcaatgctaacaagaaaaaaactgcattgaaaccagaaatacaaaaattaccagatgtccagtatgagcactgacgtttccaccttcatgatcactggaagaacacaggtgaaaggaaaaagaaatcaaaccaagtcttttagaaataaatagaaactaaaacaaggatggaatgaattacgtgtggattgttatatatagtcgcatcaactcaagcattttgggatcatcaaacccaagcatgtgtgaaaaatttgctgcataatccagtgcattatcagctgctatagttttccctcccttgaatatccttcagagaaccagaaaacggcattattgctattgcagttgaaaatttttacagattgcctggtaagtaaagatggtgaatgaattgataaaaagctacctccggtaaacatatgaagccactgctggaaggcgagctatcaaatttaagcaatcttcataggtaggctcccagaacctattaaaatagcaccaggtcagtacatggaaaatccattcaacaactaatgcaattttggaggcagtataaatcccaagcatactttgattttgacattcctttgtcataggctttttgaaactcactctccacctgcaaataagaattaaaatagaaaaggcaaattaattaagtgtggagacctagaaagaattacaaacagcaaaataagagggttttatcaatggattttttttaaatgattgtcttttttacatgcaccatctccaaaataaatataccttcaaataagtggcaacagaatatgtatttatttcagatgagtgatatatgctacaaggtttacctgaagtgccatcactcctgtggtaaactgggtcatcggatgagcagttacagggagagcatcgattgccttatacacatgacctgcatccgtatcataagtcaatcgaataagtgccaagtaggcaagtgggtaacatgccgtatgtttacagaagcaaaaatttgtaatgcagccctgagacatatttttccaatgattgagtatacaaaaactcaaatcaacttatcacagatgaatacttaaatgagctatatcattatcaaaggcaggattaagaaaactgaagtcaatagagaacatcatggaacagtcccaaaaaaaaactttctacagttgcctttcaaatttcaactacacttgcccagcaaaaaaataataataataaatcaaatacacttaagaatataggcttaagttaacaacatttcatattttcaggcaattgaagagtttaaccttaaaagctcagattactatcagaaattcataatgcagtagcttcaatttattttcaaattgactaactaaagaaccatctgggggaacattatacaagaaacttggtgtgtttatggtacttgcagaaaaaAGcttcgtaggaacaaaaactccataatctctgtatgtatccgtgactatattttttatcttctaagaaaagggaaataagataatgacataaaactcatctaggtttttttactaattgagcaaacaataatgcaataaaccagaagagacaattgcagacctggaacactcgaacgactagccaattcctttgatagagcatcaacttgctctttggttggcacctgaaacaaacaaatacctatcagtccacactagcagctaaatgccgacaaaaataagaacaggaaaaccaagtttacaagaaaaacagttaaacaaaagaagccaaacctttccggtcaaaagaagccaaagtagaccctcaggcaaaggctccccatctttaactgctgtcggcagcactttctggcactctggaatcgagagacccctaaaacgaataccctggataggaaagaggtacagacttacatccaacagcaagatatagagtgatgcacgtttaaatttcacaaagtcaaactaagctaaaaatctaacttaaaatctgcagaaaagccgccatcctaaaaaataaatcataaaagcatcaaactcttgtaatgaagcacattcctacataatgactatagaaatctagactatttagtccctgtacctcttttaaatcaatgtgctaaagttgattacagaacttgattcagattgacaaatatgagcaatcattgtgtcattcctactgtgcactgaacggatcatgctcaactgttagtacacttgcttggagatcatgaaaatatggtgattcatcattcatttattttattttccaacttttgcacattccaatttcaagatatacatagacaaaatatccaaatttgcttctatattatgccattatggtatcgtagcaccatagtttacaagcatacctcatccgggtcaagcaatgatgtttcccaaagcattccagtcatccctctcatcccaccaaggaccttggataaacaccatttaagattttagaccaatcaataaaggacacccttgagaaacaatccataaataatcaataccaaaagcataccatatcgactgttatatttccaagttggacctttccatgctccgatttaagtttctttaagcggtcctgtaacagaatggtaaagtgagttgagcttttctttcctggtatttgacaggaatttggcactcttggatggttgagacaaagcacagggcatgcaactcatatatggattttaggtaaacagtgaaatggtgaagttattttatatcaaccatgatgacttcctcataatgataggagcatgcaactagctgcaattatggtcttctctgatacagattctgaatattgtgattactgcttggtgcaaaactaaacttgtgaagaaaacaataacctgatatgccaatcttgtaatgcattttcaatagtgcagaaaacacaaagctagtggctgctcaaaatatacacattttgtgatgagcggtttctgaaggtgctgaaacaatggtgtaatgcaatgttcatgcagcatttgcttccatgcgccagcacagcttttacaaaaaagagataatccacaacatttggaagttgcaagcatgacctcacacaatatcgcatgaagcaagaagatgatatcactacaggctaaagcagtaaagcaaaaagggtagataaagaactggatgccatatactttccaactttgtgtgagttattagacgtgctagaaagtaacaaacctgttgttcaggaatcaattcctgcagctgggacttgagatcctgcatataatatttaaaaacacaatcaaacatcttttttcagagcacattccccactttcgagcctagccacagatggcacatagtaactggtagtttcaaccacacatttagcacgaacgaacaaaaactaattgacttacaagatcagatgcgctctgcatctgcagccatcgcacaccaccaagcgtggtggcctcctgtgcctgacaacacaaagcaacgaacaatttttcagcgcacataaatgcaaacgcatcgccagaaaataggcatgcaagatgttggatggctcaccacgcgggatcgaagcctcgacaccgcggtcaggcccctgaagaacgccatggccggagcacgcggctacagggcaagctgctgcgcaaacaaacaacgaagtaaacgatttcgtcagaacataatacatcccaaaatcaaccaaaatcccgcaaaaaaaataattaaacaccacCAcgcgcacgcgcggaggaacagatcgccacatcgattccaaacaattcctcccaaaccgaaaaaaataataattaaaaaaagcaaattaaatctctcgaaactacaacggatccacaattcgtaatcccccgcgtagaaaaccaaaatccaatagaaaaaaaacccaccgaaattccacataaaaaatccatctacacaaccacccgcccaggaatcctacagcctacggcgaacaggatcgcaaccgggagagatgaaatgcacttacgctttggagaatttcacggaggcgtcgcgaattgaatcgaatcggggagggagagagagagagagcgattgttcaaagcgctcccggagaggaggaagaaGgggaaggcgaccgagcgagcgattgttcctcgcc
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| CDS seq | atggcgttcttcaggggcctgaccgcggtgtcgaggcttcgatcccgcgtggcacaggaggccaccacgcttggtggtgtgcgatggctgcagatgcagagcgcatctgatcttgatctcaagtcccagctgcaggaattgattcctgaacaacaggaccgcttaaagaaacttaaatcggagcatggaaaggtccaacttggaaatataacagtcgatatggtccttggtgggatgagagggatgactggaatgctttgggaaacatcattgcttgacccggatgagggtattcgttttaggggtctctcgattccagagtgccagaaagtgctgccgacagcagttaaagatggggagcctttgcctgagggtctactttggcttcttttgaccggaaaggtgccaaccaaagagcaagttgatgctctatcaaaggaattggctagtcgttcgagtgttccaggtcatgtgtataaggcaatcgatgctctccctgtaactgctcatccgatgacccagtttaccacaggagtgatggcacttcaggtggagagtgagtttcaaaaagcctatgacaaaggaatgtcaaaatcaaagttctgggagcctacctatgaagattgcttaaatttgatagctcgccttccagcagtggcttcatatgtttaccggaggatattcaagggagggaaaactatagcagctgataatgcactggattatgcagcaaatttttcacacatgcttgggtttgatgatcccaaaatgcttgagttgatgcgactatatataacaatccacactgatcatgaaggtggaaacgtcagtgctcatactggacatctggaagtgttgttgtggatcaaatctgtaataggtgagactggtagtgacgttacaactgatcaactcaaagagtatgtgtggaagacactaaaaagtggaaagagggagtttgctttgaagtacttgcctgaggatccacttttccaactggtctccaagttgtatgaagttgtgcctcctatcctcactgagcttggcaaggtcaaaaacccatggcctaatgttgatgctcacagcggagttctactgaaccactttggattatctgaagctcggtattacactgttcttttcggagtttcaaggagcattggaataggatctcagctcatttgggaccgtgctcttggcctgccgctcgaaagaccgaagagtgtcaccatggagtggctggagaaccactgcaagaaggttgctgcttga
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| Protein seq | MAFFRGLTAVSRLRSRVAQEATTLGGVRWLQMQSASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKVAA |
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| Function | Citrate synthase 4, mitochondrial [UniProtKB/Swiss-Prot:P20115] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0007310 | OsGoSa_02g0007310.01 | Chr02 | 5233929 | 5240565 | - | NAM | ||
| CDS seq | atggcgttcttcaggggcctgaccgcggtgtcgaggcttcgatcccgcgtggcacaggaggccaccacgcttggtggtgtgcgatggctgcagatgcagagcgcatctgatcttgatctcaagtcccagctgcaggaattgattcctgaacaacaggaccgcttaaagaaacttaaatcggagcatggaaaggtccaacttggaaatataacagtcgatatggtccttggtgggatgagagggatgactggaatgctttgggaaacatcattgcttgacccggatgagggtattcgttttaggggtctctcgattccagagtgccagaaagtgctgccgacagcagttaaagatggggagcctttgcctgagggtctactttggcttcttttgaccggaaaggtgccaaccaaagagcaagttgatgctctatcaaaggaattggctagtcgttcgagtgttccaggtcatgtgtataaggcaatcgatgctctccctgtaactgctcatccgatgacccagtttaccacaggagtgatggcacttcaggtggagagtgagtttcaaaaagcctatgacaaaggaatgtcaaaatcaaagttctgggagcctacctatgaagattgcttaaatttgatagctcgccttccagcagtggcttcatatgtttaccggaggatattcaagggagggaaaactatagcagctgataatgcactggattatgcagcaaatttttcacacatgcttgggtttgatgatcccaaaatgcttgagttgatgcgactatatataacaatccacactgatcatgaaggtggaaacgtcagtgctcatactggacatctggaagtgttgttgtggatcaaatctgtaataggtgagactggtagtgacgttacaactgatcaactcaaagagtatgtgtggaagacactaaaaagtggaaagagggagtttgctttgaagtacttgcctgaggatccacttttccaactggtctccaagttgtatgaagttgtgcctcctatcctcactgagcttggcaaggtcaaaaacccatggcctaatgttgatgctcacagcggagttctactgaaccactttggattatctgaagctcggtattacactgttcttttcggagtttcaaggagcattggaataggatctcagctcatttgggaccgtgctcttggcctgccgctcgaaagaccgaagagtgtcaccatggagtggctggagaaccactgcaagaaggttgctgcttga
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| Protein seq | MAFFRGLTAVSRLRSRVAQEATTLGGVRWLQMQSASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLDPDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSSVPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLIARLPAVASYVYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHEGGNVSAHTGHLEVLLWIKSVIGETGSDVTTDQLKEYVWKTLKSGKREFALKYLPEDPLFQLVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQLIWDRALGLPLERPKSVTMEWLENHCKKVAA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0007310 | OsGoSa_02g0007310.02 | Chr02 | 5234085 | 5240542 | - | IsoSeq | ||
| CDS seq | cgccttcccCttcttcctcctctccgggagcgctttgaacaatcgctctctctctctctccctccccgattcgattcaattcgcgacgcctccgtgaaattctccaaagccagcttgccctgtagccgcgtgctccggccatggcgttcttcaggg |
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| Protein seq | RLPLLPPLRERFEQSLSLSLPPRFDSIRDASVKFSKASLPCSRVLRPWRSSG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 5235056 | 5235377 | - | OsGoSa_02g0007310.02 | OsGoSa_02g0007310.02,OsGoSa_02g0007310.01 | All |
| SE | Chr02 | 5235478 | 5236483 | - | OsGoSa_02g0007310.02 | OsGoSa_02g0007310.02,OsGoSa_02g0007310.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.482012 | 60.369179 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0194100 | RBH | 3.969144 | 3.731894 | 19.584156 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g10070 | RBH | 2.761230 | 2.458665 | 5.120973 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0194100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0007100 | RBH | 1.140250 | 91.778214 | 21.978249 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0007270 | RBH | 0.636356 | 15.767469 | 23.434031 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0007040 | RBH | 2.369389 | 97.062027 | 55.836834 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0006990 | RBH | 0.308666 | 2.499999 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0007060 | RBH | 12.092079 | 81.744675 | 87.807831 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0088000 | RBH | 14.229755 | 30.2324075 | 17.4745955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007000 | RBH | 0.227710 | 8.457302 | 13.664166 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0091000 | RBH | 16.337132 | 18.910413 | 24.1493285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0007430 | RBH | 0.336010 | 0.865301 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007040 | RBH | 1.209492 | 51.027233 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016040 | RBH | 1.285153 | 12.604136 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0007300 | RBH | 1.032338 | 6.077175 | 6.301013 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0007060 | RBH | 0.259627 | 48.582993 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G007160 | RBH | 0.998805 | 20.721066 | 10.273351 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0007130 | RBH | 0.946734 | 67.421516 | 69.504639 |
