Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0005940 | OGI:02012680 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:4104576-4112154 | ||||||||
| Gene Symbol | VHA-A2, VHAA2 | ||||||||||
| DNA seq | aacacgagacgcagcgctcgcaaccgtatcagaaaagaagaggcgtcctccaatcagagctcgagacgaacccaattactagcagcaccaaaatataatcagatccgaaacaaaaagaaaaacaaaaaaaaaaaaacgcgacaacatctatttaaggcaggatccacctcacccccgccccgcccaaatcgctccctccccttccctccccgaccagatcgcgacaccgccaccgccgatccgaaggtcggcgacgacgacgaccaccgccgccaccctcgtcctcgccgctgggcggccatggcgttcggcgaccgcatcaccaccttcgaggactccgagaaggagagcgagtacggctacgtccgcaaggtccgtcaCCCccccccctcctccccccctctccgctatactcctctgctcgcattgcttccaatgtagatcccaccgtgctcgttccgcgcgatcccgacggggcgcgggctctgtggcggcgggggcgtggtcggatcggggctgaattggcgccgagatttggttaggatgggatggggtggtggtggtgatggcgcggattgctttggggatctgtcgcgggcgggtggctagatagggccttcggatccagtctggcattggtggctagctcgcttggtcgggtggggttttgcggagagtccgtgttgctgcgcggctctgcttgagattcgcatgtgGTgtggtgttctgatcgccagtccgtaccacgccatcatataatgatatgatcttttgttgcaggggtatcgctaatagtttaggttttactgtgaactcgtgactagagcggtgctcagatgtgttttgacaatttgactgatggatggcattgctattagcgtggttggatgtaaaaataaagttgttcgtttgttgtaatttaagaaccactagaagatacactggcttctattcctctcccggattatggattgaatgatgaaccctggacgaatagtgtgcactctcactctctgcttaatttcatcgaatttgctactccccttgttctaaaatataacaacctagtacaagatttggcatcacctagtaggagatctgtctagaatcgcagtactcggtgttatattttgggatggatggagtatctatttagaaacaatacacatcattccaaaaatgccatagttcaactgaccgtgccactcaacaatgaattgcgtcactcatgtatttctagataggtttatgctagatttagtgtttgttaatgctaaactgagttttctcatacttatgtgttggaatcgtagatcctattatgaactcagtgctatcgtatctgtctggtagaatatttagatgtcatcttatgctaagatctgcttcctagttatatgcgcactagtaattgccctttttcttttgtatgatggcatgtttagctcttaatttcattgtgttgatgaacattattgatcgaatgggttgttttaggtctctggacctgtggttgtggctgatggaatgggaggtgctgccatgtatgaactcgtccgtgttgggcacgataatcttattggagaaattattcgtcttgagggggattcagctacaattcaaggtgtggaacagctctttagtttctatctttaacagcatacagacacgagttctgatagcaattatatgcctgttgaaaccatagtcAaATATCTAACATCAGAAATGTTGTTATTTGTGTATCACAGTTTATGAGGAAACTGCTGGACTGATGGTTAACGACCCTGTTTTGAGAACACGAAAGGTGCTTTTTTGTCATTTATTAAACTGATCTGTCAAGCGTACTTGTTTTTGCTTGTTTTTAACACATAAAGGTTATGCCTGCACAGCCCCTGTCGGTTGAGTTGGGACCTGGTATTCTTGGGAACATTTTTGATGGGATCCAGGTACTTCAAGTTGTGAATGTGGAGTAATTTCATTTATTTTTTAAGCTCCTTGCACTCCTTGTCTGTTAACTCTTGTCATGTCCTTTTTCCTATCGTGTTTGCAGCGCCCTCTGAAAACTATTGCTATTAAATCTGGAGATGTGTACATTCCGCGTGGTGTCTCAGTTCCTGCCCTTGACAAAGATGCTTTGTGGCATTTTAAGCCAGAAAAACTAGGTAAAGTATTTTGTATACTTCAGGGGGGAGGGGGGggggggttaccttttgttatcctttttcatttagcatgcagtgcaaggcactctaaaatcatctcctattatcattatgctgcaggtgttggagatattatcacgggtggagatctatatgctgtaagttaccatgaattttgagtttcgtcttatatggttatcatgaacactatgcatcaagatagtagcttgagatctgtcatcattaatcatgtgcctttgctaaagttttctgactatatggcagattgtcaatgaaaatactttgatgcaacacaaggttgctcttccacctggcgctatggggaaaataagttacatcgccccagctggtcaatatagcctgcaggttagtggatgctatcagtatcactttatcccatgtcctattgatctgcatgcattctaactttgcttaaccttgtatggaaccctgcttttgctataaatgcaggatacagtgctagaattggaatttcagggtatcaaaaaggaatttaccatgctccaggtaaacaagttccatcttttatgaagataacatgtctgaggattaaagcattagtttaatctgttgtactgcactacagacatggcctgtgcgttcaccaaggcctgttatggaaaaacttgctgcagatacacctcttcttacaggacaggtttgtacagaacctaccatggttctcactcataataatatgtgcttttcctccccatttttattaaggtttctgtgttgaaccactaaatgctcaaagtactgttttcctcctcttttttctactcaactaatctaattcttatatacttttaaacgatcccagcgtgtacttgatgcattgttcccctcagttcttggaggaacatgtgccattcctggagcttttggttgtggaaagactgtcattagtcaggcactttccaaggtgatcactatttttctattcctcattgccatgtagtatctatagaaactatactctctttttgttgccttgatcacatctttgtactgagatgaatagcctctcaaactctgcagtattccaactcccaagctgtggtttatgtcggatgtggcgaaagaggaaatgagatggctgaggttctcatggactttccccaattgacaatgacgacagaggatggacgtgaagagtctgtgatgaagagAACaacactggtggctaacacatccaacatgcctgtcgctgctcgtgaagcttccatttatacaggtaatggtgtattgctcctgattgattgctacattaagccataatagtgtctgatatccatatagtgtgccccactttgtcatatagtagttgttttgtattttagttgtcatatagttgtttagttttgtatggatcccagcaatatgatgttacatcaacctggacatgcctacttatttggtacgagtactagttaacatgtatccacgtttagaatcttcacaccgcacaacagtggctgaaagtacaacattgatGAtatatgcatctttgtccctggtttatctgtgtataagagatgcagggcaaaatgaaatgtagatgcgcatttattcctgagaCccacacttgtatattattgtgaaATatattatAaaatcttgatgatgaaggcatttccctccccaactatattttcaattgttgctatccagttagattttttgtaacattggcttatctatatgtttaatttcctgttgctttggtcatttggactgctatatgtattttatggaccttaagttcatcaccaatgatctcattgtaaacaaaatcttatatgactttgccccccaggaattacgatagctgagtattaccgtgacatgggttacaatgtcagcatgatggctgattccacctcacgatgggctgaggcattgcgtgaaatttctGggcgtttggtacgttgtttttcttctgccatacttgccctcatttcctttttgtatttctcatcctagtgtactttaacttgcacaaagctctgtcctattctcattggaaagacaatcagcttccgatttcttaaacggtgtgccgacatatttacactagcagttattctttcattgtgttttcactagtagttatgatagcctatttacactaaagtagttatagaatcaatttacatcatttactgcaatattaccatgtatggctAaaaattgctaactgctaatatagcctttggaaatagaatacttaaaagttaagattgttataactcattcgtgttgattttttgaatatctattttatgttaatattctaatgggcaatgccacatttttgttatccaggctgaaatgcctgcagatagtggttaccctgcttatttggctgcaagactggcatcTttctatgaacgtgctggtaaagtaaggtgtcttggaagtccaaaacgggacggaagtgttacaattgtaggggctgtctctccacctggtggtgatttttcagatcctgttacctctgcaacccttagtattgttcaggtaaggaagcagctaagtctgtcatgattaataatgtttatcgtttcagtgttgttaaaccacatgttcttgtttgtaggtcttctggggattagataaaaagcttgcccagaggaagcaTttcccatcagtgaattggctcatatcttattcgaaatattctaaggtttgttctgacaagcaacttgcttaaatagtttattctcccctcagattccaactgtaagttgatttagacttgtgcacaaagattaagaaagtactaaaatgaatttgttgccattcatttattttcatgaaaatgcaagagaattgcgtttcatttcattaaggggaagaaaataaagtaattttttttgttgccattcatttatagttttatactattgaaaaaatggaacatttatttgtgagagctgtagcacttaTtttatttgacaagggcaaacatgaaagagttcactataagttgtttttacttttttctagtcaaacttaaaagtttgtagaaaaatatagcaacattttcaacacaaaacaaacatagtatcaaaatatattcaatgttacatttgattAAactaatttgatgttgtaacttgtaaatgttgctaattttttctataaacttggtcaaatgtaaagaagtttgactaggaaaaatgtcaaagcgacaaaatataaaacggagagaataggaaggagttgagaaggctaaaatggctagaggaagtagacaacaggtctctagaataacagaactatacgagtttctatggttataatttgttctaattgTTtttggtcttctaactcatttttttcaatgaaatgctaataagtttatatttgaacattttcctgttcgttcgcatatgctttgatgttatgtgacaatacaatgttttgtgttgcaggcgcttgagccgcactatgagagggaagatccagatttcattgatattagaacaaaggcacgtgaggtgttgcagAgggaagatgatttaaatgaaatagtgcaggtactattttgagccttgtgaatatttactctcctggaattccacgatggtttgacctgtcttattgaagttaccttttctcatactgtcgtatccctcctggctgtaatgcttcttattaatctgcatcatgcaaatgtaacatcctatcagaagtgttcgcacatattacttgcctaccataagtgctttgtaccagtttcttggcatttgttcacttaatggtcctgctaatattttgaaaatgataataaacttgaccttagtacgtacgttatttttaaacaagctgtggcataagtaagatttgagcttttgttgttctttgtgtgatatttattgttgactctaccccacattcagcttgttggtaaagacgcactggcagaatctgacaagattacactggagacagcaaaacttctgagagaagattatttggcacaaaatgcattcaccccgtgagtgttaaacccatttgatagttctactaacctgtgtcataatccatattaactaattgatcaattctgttgcatgaaacagatatgataagtattgcccattctacaaatctgtttggatgatgcgcaacattattcatttcaacacattggcaacccaggtaaattctcttacttgttccaggaattcgataatttgccaattttctttagaaaaccaatcctagctgactagaaaatcatgccaaaactttccaataattgtgttctatcagctgtcactgatgctcgtgagcttatatttaaatcaatctgggtcacctagaggccccaaatcccaagatcatagagtggcgtgaaactgagacactggttcctgtttgatctagaatttctgatttctggaacaaaaagatagtagtatgagttggatttatatacggagttctaggttttggattactggcatagataggctctggatcgatttgtcacttgaatttaaataattgaatcctagcatgggcatcagcatggaacttcaacacttaaggtatcatttacattgaaaggtgaatgagtggagctaattgaagacaactgaactgattagaggcactgttgtatgtcatataagttactcattgtttactcattactcaaTataattacaaataggatattcccatacaaaagtagcataagtactattttaataatctgtatgcttttattgttttataggcggtggagcgggcagctggtgctgatggacagaagattacatacagtgtcataaagcatcgcatgggcgatctattctaccgcctagtgtacgcatttctaccctattttcaagtttctaacactcgctgtgtagattgcaatatgaccaatggTatttgttgcttgtcacaggtcgcAaaaattcgaggatcccgcagagggcaaagaagttttgattgcgaaatttcagaagctgtacgatgaccttaccgccgggttccgcaatctagaagacgaagcacggtgaataattattgtagattctgtgtaaacaataaggatatatcaccaaatgttctataaaaaaaacatggaagcattccatttgctgctaccgaggctctaggtcgagatcatgtagaaattttcctgcaactatacgcgccgtcgtcgttttgtcaggttttgatcccaagtgctcgatggacacgccattatttctactctatgtatcatttatttatcatcttcattcacatcattgtaataaacatgggcatgtttatagtcgaataaatacgatgtccatctgtttaaaagtcttcgttgaaggtcattcatctttatttgttcgttg
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| CDS seq | atggcgttcggcgaccgcatcaccaccttcgaggactccgagaaggagagcgagtacggctacgtccgcaaggtctctggacctgtggttgtggctgatggaatgggaggtgctgccatgtatgaactcgtccgtgttgggcacgataatcttattggagaaattattcgtcttgagggggattcagctacaattcaagTTTATGAGGAAACTGCTGGACTGATGGTTAACGACCCTGTTTTGAGAACACGAAAGCCCCTGTCGGTTGAGTTGGGACCTGGTATTCTTGGGAACATTTTTGATGGGATCCAGCGCCCTCTGAAAACTATTGCTATTAAATCTGGAGATGTGTACATTCCGCGTGGTGTCTCAGTTCCTGCCCTTGACAAAGATGCTTTGTGGCATTTTAAGCCAGAAAAACTAGgtgttggagatattatcacgggtggagatctatatgctattgtcaatgaaaatactttgatgcaacacaaggttgctcttccacctggcgctatggggaaaataagttacatcgccccagctggtcaatatagcctgcaggatacagtgctagaattggaatttcagggtatcaaaaaggaatttaccatgctccagacatggcctgtgcgttcaccaaggcctgttatggaaaaacttgctgcagatacacctcttcttacaggacagcgtgtacttgatgcattgttcccctcagttcttggaggaacatgtgccattcctggagcttttggttgtggaaagactgtcattagtcaggcactttccaagtattccaactcccaagctgtggtttatgtcggatgtggcgaaagaggaaatgagatggctgaggttctcatggactttccccaattgacaatgacgacagaggatggacgtgaagagtctgtgatgaagagAACaacactggtggctaacacatccaacatgcctgtcgctgctcgtgaagcttccatttatacaggaattacgatagctgagtattaccgtgacatgggttacaatgtcagcatgatggctgattccacctcacgatgggctgaggcattgcgtgaaatttctGggcgtttggctgaaatgcctgcagatagtggttaccctgcttatttggctgcaagactggcatcTttctatgaacgtgctggtaaagtaaggtgtcttggaagtccaaaacgggacggaagtgttacaattgtaggggctgtctctccacctggtggtgatttttcagatcctgttacctctgcaacccttagtattgttcaggtcttctggggattagataaaaagcttgcccagaggaagcaTttcccatcagtgaattggctcatatcttattcgaaatattctaaggcgcttgagccgcactatgagagggaagatccagatttcattgatattagaacaaaggcacgtgaggtgttgcagAgggaagatgatttaaatgaaatagtgcagcttgttggtaaagacgcactggcagaatctgacaagattacactggagacagcaaaacttctgagagaagattatttggcacaaaatgcattcaccccatatgataagtattgcccattctacaaatctgtttggatgatgcgcaacattattcatttcaacacattggcaacccaggcggtggagcgggcagctggtgctgatggacagaagattacatacagtgtcataaagcatcgcatgggcgatctattctaccgcctagtgtcgcAaaaattcgaggatcccgcagagggcaaagaagttttgattgcgaaatttcagaagctgtacgatgaccttaccgccgggttccgcaatctagaagacgaagcacggtga
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| Protein seq | MAFGDRITTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAIKSGDVYIPRGVSVPALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALPPGAMGKISYIAPAGQYSLQDTVLELEFQGIKKEFTMLQTWPVRSPRPVMEKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSQAVVYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALEPHYEREDPDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKYCPFYKSVWMMRNIIHFNTLATQAVERAAGADGQKITYSVIKHRMGDLFYRLVSQKFEDPAEGKEVLIAKFQKLYDDLTAGFRNLEDEAR |
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| Function | V-type proton ATPase catalytic subunit A [UniProtKB/Swiss-Prot:P09469] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0005940 | OsGoSa_02g0005940.01 | Chr02 | 4104576 | 4112154 | + | NAM | ||
| CDS seq | atggcgttcggcgaccgcatcaccaccttcgaggactccgagaaggagagcgagtacggctacgtccgcaaggtctctggacctgtggttgtggctgatggaatgggaggtgctgccatgtatgaactcgtccgtgttgggcacgataatcttattggagaaattattcgtcttgagggggattcagctacaattcaagTTTATGAGGAAACTGCTGGACTGATGGTTAACGACCCTGTTTTGAGAACACGAAAGCCCCTGTCGGTTGAGTTGGGACCTGGTATTCTTGGGAACATTTTTGATGGGATCCAGCGCCCTCTGAAAACTATTGCTATTAAATCTGGAGATGTGTACATTCCGCGTGGTGTCTCAGTTCCTGCCCTTGACAAAGATGCTTTGTGGCATTTTAAGCCAGAAAAACTAGgtgttggagatattatcacgggtggagatctatatgctattgtcaatgaaaatactttgatgcaacacaaggttgctcttccacctggcgctatggggaaaataagttacatcgccccagctggtcaatatagcctgcaggatacagtgctagaattggaatttcagggtatcaaaaaggaatttaccatgctccagacatggcctgtgcgttcaccaaggcctgttatggaaaaacttgctgcagatacacctcttcttacaggacagcgtgtacttgatgcattgttcccctcagttcttggaggaacatgtgccattcctggagcttttggttgtggaaagactgtcattagtcaggcactttccaagtattccaactcccaagctgtggtttatgtcggatgtggcgaaagaggaaatgagatggctgaggttctcatggactttccccaattgacaatgacgacagaggatggacgtgaagagtctgtgatgaagagAACaacactggtggctaacacatccaacatgcctgtcgctgctcgtgaagcttccatttatacaggaattacgatagctgagtattaccgtgacatgggttacaatgtcagcatgatggctgattccacctcacgatgggctgaggcattgcgtgaaatttctGggcgtttggctgaaatgcctgcagatagtggttaccctgcttatttggctgcaagactggcatcTttctatgaacgtgctggtaaagtaaggtgtcttggaagtccaaaacgggacggaagtgttacaattgtaggggctgtctctccacctggtggtgatttttcagatcctgttacctctgcaacccttagtattgttcaggtcttctggggattagataaaaagcttgcccagaggaagcaTttcccatcagtgaattggctcatatcttattcgaaatattctaaggcgcttgagccgcactatgagagggaagatccagatttcattgatattagaacaaaggcacgtgaggtgttgcagAgggaagatgatttaaatgaaatagtgcagcttgttggtaaagacgcactggcagaatctgacaagattacactggagacagcaaaacttctgagagaagattatttggcacaaaatgcattcaccccatatgataagtattgcccattctacaaatctgtttggatgatgcgcaacattattcatttcaacacattggcaacccaggcggtggagcgggcagctggtgctgatggacagaagattacatacagtgtcataaagcatcgcatgggcgatctattctaccgcctagtgtcgcAaaaattcgaggatcccgcagagggcaaagaagttttgattgcgaaatttcagaagctgtacgatgaccttaccgccgggttccgcaatctagaagacgaagcacggtga
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| Protein seq | MAFGDRITTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAIKSGDVYIPRGVSVPALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALPPGAMGKISYIAPAGQYSLQDTVLELEFQGIKKEFTMLQTWPVRSPRPVMEKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSQAVVYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSKALEPHYEREDPDFIDIRTKAREVLQREDDLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKYCPFYKSVWMMRNIIHFNTLATQAVERAAGADGQKITYSVIKHRMGDLFYRLVSQKFEDPAEGKEVLIAKFQKLYDDLTAGFRNLEDEAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.519524 | 69.048676 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0175400 | RBH | 0.423242 | 0.218288 | 11.639536 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g07870 | RBH | 0.262634 | 0.134719 | 2.749353 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0175400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0005800 | RBH | 0.076264 | 24.817139 | 13.743318 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0005910 | RBH | 0.051572 | 9.409337 | 6.805924 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0005720 | RBH | 0.503843 | 67.475204 | 23.761892 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0005650 | RBH | 0.000000 | 3.478390 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0005680 | RBH | 0.840495 | 87.474724 | 41.021179 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0070600 | RBH | 10.152502 | 3.870153 | 3.265231 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0005660 | RBH | 0.182622 | 6.313228 | 4.596411 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0072700 | RBH | 8.2013695 | 0.49111 | 17.270665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0006070 | RBH | 0.066515 | 0.072959 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0005640 | RBH | 0.106755 | 52.154861 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0024860 | RBH | 19.161407 | 106.421814 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0005880 | RBH | 0.000000 | 5.473398 | 3.156633 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0005660 | RBH | 0.188019 | 34.785511 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G005810 | RBH | 0.182634 | 33.145290 | 7.732670 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0005780 | RBH | 0.000000 | 36.026497 | 20.739313 |
