Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0000860 | OGI:02002730 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:600913-603234 | ||||||||
| Gene Symbol | OsCPPR1 | ||||||||||
| DNA seq | ctacgcacccatggcaacccgtttgcccctcttggatgttgatgatgcattctctgccaatatcctagacaaaatgtctgcttgctttgagtaccctccagcttttaagctgtccatcagggcatcgcaacccttttgatccacgacacctcctttgttcttgatcttgcaaagcatggagtatgcaggcaatgtcttctcctcagtgtacagggcctccaagactctgtcataggttgagaagctgacatcaaagtccctgtccaatgcaaaatcagccaacttATGtgcctccatcactttgtcattctcgcagagggcaatcagcaacttatctagatcaggcaagcatccattttccaccatcagattgacacggccgattgcttcctccacatggcccctcatgaagagagcttccagaatcttatgagccatgtccatgttctctgtaacccccttctcaatcatactcttcataaccctgctagcagtctgaacccggccaccgttgaaaagcgctaccatgacagacatgaacagggatgggctcggtacatgcccttgttccatcatactgtcaagtgccgtctttgcatcagctggctcattcttcttcaggaagctatcaacaagcagtgcatgcgattcagggtcagtacggacaccacggcgtgtcataatggcaagaatctcctgtgctgcttctggcacaccttcctttgcatgcccacggataagactgttaaaagcagccttgtcatcaacgcctttcttcatcagctgcctgaagaaagtctcagccttgctggtgttcccattgctgcacaaatactcaatcactggattataagctggcccttcaagcacagggctctttgggctcaacagtgtccccttctcaagaagctcatccatcacctcaacagcaccatcacactttccacccgcgcacaagctctccatcagcaccccatactgtcttggatccacaagaacatgcttgaactgcccactcttctggtgcacatccaacgcaccatccaagtcacccgctcggcatagcgtcgtcacaagcctcaaaaacactgacttgtcctttggagtgagccgccgctccgccatgtcatccattgccttccgggcctccacaacccttccctcatcatcacagagccctggcatcagagcagcaaacgtcttctcgctcaacctcaaccccttctcccccatttccgagaacagccccactgcctcctccaccttacctgcttcaacatatcccttgatcatgacattgtacgacaccgagttttgtgcaaaaccagctcctggcatttcgtcgaacactttgcgggcactctccagatcacccgCccgaacccaagcattgagaagagtgttgtacgtcgtcacatccggtgtcaccccgtgatccttcatgtccccgaacaccctcaaggctgcctccatcttcttgcacaggccaaacccccagatcaatgtgttgtaggtggacaggtcaggggtgacggcgtcggcgatcatggcgttgtagatccgcctggccatggcctctcggccgcggcagaggatggccttgaggacggcgttgtaggagagcgcggtgcgggcgatgccgaggtcgggcatcaagcggaagagcttaacggattcctgcgggatgttggccttgccgtaggcggcgatgagggcggcgacggtggcctcctcgggggcgatggagaaggagggcatggtgtcgaggaggatgcagcgggcgtggttgagcatgctgtgggaggcgaggatcgggatgaggagggagaaggtggctggctcggggctgaagccggcgcgacggtaggcgaagcggaagaactggagggcgaggtcggcgcggccggcggcggcggCcccggagatgacgccgtggacgagcggcgcggcgagcgtcggggagagcaggcggatggagttctcgaggCgggtggtccacgggcggcggcggatcatgtagaggatggtctcgtggaggggctcctCgcggcggggcgggttgggggtcgccgccgccgcctccgccggcgtcacctccggcacagcctcggcctcggcctcggtctccgggggaggtggttccggcgtgtcgagggtggagaaggcatggcggaagagaggcgcggaggggttgttgcgggagaggaggcggagggggaggtggagatggtggcggcgcgacatggctgcggcggcgtggaggagtggagctcggggagaagagtcgagggtttaggaggaggaagaggctcgacaccaccc
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| CDS seq | atgtcgcgccgccaccatctccacctccccctccgcctcctctcccgcaacaacccctccgcgcctctcttccgccatgccttctccaccctcgacacgccggaaccacctcccccggagaccgaggccgaggccgaggctgtgccggaggtgacgccggcggaggcggcggcggcgacccccaacccgccccgccgcGaggagcccctccacgagaccatcctctacatgatccgccgccgcccgtggaccacccGcctcgagaactccatccgcctgctctccccgacgctcgccgcgccgctcgtccacggcgtcatctccgggGccgccgccgccggccgcgccgacctcgccctccagttcttccgcttcgcctaccgtcgcgccggcttcagccccgagccagccaccttctccctcctcatcccgatcctcgcctcccacagcatgctcaaccacgcccgctgcatcctcctcgacaccatgccctccttctccatcgcccccgaggaggccaccgtcgccgccctcatcgccgcctacggcaaggccaacatcccgcaggaatccgttaagctcttccgcttgatgcccgacctcggcatcgcccgcaccgcgctctcctacaacgccgtcctcaaggccatcctctgccgcggccgagaggccatggccaggcggatctacaacgccatgatcgccgacgccgtcacccctgacctgtccacctacaacacattgatctgggggtttggcctgtgcaagaagatggaggcagccttgagggtgttcggggacatgaaggatcacggggtgacaccggatgtgacgacgtacaacactcttctcaatgcttgggttcggGcgggtgatctggagagtgcccgcaaagtgttcgacgaaatgccaggagctggttttgcacaaaactcggtgtcgtacaatgtcatgatcaagggatatgttgaagcaggtaaggtggaggaggcagtggggctgttctcggaaatgggggagaaggggttgaggttgagcgagaagacgtttgctgctctgatgccagggctctgtgatgatgagggaagggttgtggaggcccggaaggcaatggatgacatggcggagcggcggctcactccaaaggacaagtcagtgtttttgaggcttgtgacgacgctatgccgagcgggtgacttggatggtgcgttggatgtgcaccagaagagtgggcagttcaagcatgttcttgtggatccaagacagtatggggtgctgatggagagcttgtgcgcgggtggaaagtgtgatggtgctgttgaggtgatggatgagcttcttgagaaggggacactgttgagcccaaagagccctgtgcttgaagggccagcttataatccagtgattgagtatttgtgcagcaatgggaacaccagcaaggctgagactttcttcaggcagctgatgaagaaaggcgttgatgacaaggctgcttttaacagtcttatccgtgggcatgcaaaggaaggtgtgccagaagcagcacaggagattcttgccattatgacacgccgtggtgtccgtactgaccctgaatcgcatgcactgcttgttgatagcttcctgaagaagaatgagccagctgatgcaaagacggcacttgacagtatgatggaacaagggcatgtaccgagcccatccctgttcatgtctgtcatggtagcgcttttcaacggtggccgggttcagactgctagcagggttatgaagagtatgattgagaagggggttacagagaacatggacatggctcataagattctggaagctctcttcatgaggggccatgtggaggaagcaatcggccgtgtcaatctgatggtggaaaatggatgcttgcctgatctagataagttgctgattgccctctgcgagaatgacaaagtgatggaggcaCATaagttggctgattttgcattggacagggactttgatgtcagcttctcaacctatgacagagtcttggaggccctgtacactgaggagaagacattgcctgcatactccatgctttgcaagatcaagaacaaaggaggtgtcgtggatcaaaagggttgcgatgccctgatggacagcttaaaagctggagggtactcaaagcaagcagacattttgtctaggatattggcagagaatgcatcatcaacatccaagaggggcaaacgggttgccatgggtgcgtag
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| Protein seq | MSRRHHLHLPLRLLSRNNPSAPLFRHAFSTLDTPEPPPPETEAEAEAVPEVTPAEAAAATPNPPRREEPLHETILYMIRRRPWTTRLENSIRLLSPTLAAPLVHGVISGAAAAGRADLALQFFRFAYRRAGFSPEPATFSLLIPILASHSMLNHARCILLDTMPSFSIAPEEATVAALIAAYGKANIPQESVKLFRLMPDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCDDEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLMESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQLMKKGVDDKAAFNSLIRGHAKEGVPEAAQEILAIMTRRGVRTDPESHALLVDSFLKKNEPADAKTALDSMMEQGHVPSPSLFMSVMVALFNGGRVQTASRVMKSMIEKGVTENMDMAHKILEALFMRGHVEEAIGRVNLMVENGCLPDLDKLLIALCENDKVMEAHKLADFALDRDFDVSFSTYDRVLEALYTEEKTLPAYSMLCKIKNKGGVVDQKGCDALMDSLKAGGYSKQADILSRILAENASSTSKRGKRVAMGA |
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| Function | Pentatricopeptide repeat-containing protein At2g37230 [UniProtKB/Swiss-Prot:Q9ZUU3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0000860 | OsGoSa_02g0000860.01 | Chr02 | 600913 | 603234 | - | NAM | ||
| CDS seq | atgtcgcgccgccaccatctccacctccccctccgcctcctctcccgcaacaacccctccgcgcctctcttccgccatgccttctccaccctcgacacgccggaaccacctcccccggagaccgaggccgaggccgaggctgtgccggaggtgacgccggcggaggcggcggcggcgacccccaacccgccccgccgcGaggagcccctccacgagaccatcctctacatgatccgccgccgcccgtggaccacccGcctcgagaactccatccgcctgctctccccgacgctcgccgcgccgctcgtccacggcgtcatctccgggGccgccgccgccggccgcgccgacctcgccctccagttcttccgcttcgcctaccgtcgcgccggcttcagccccgagccagccaccttctccctcctcatcccgatcctcgcctcccacagcatgctcaaccacgcccgctgcatcctcctcgacaccatgccctccttctccatcgcccccgaggaggccaccgtcgccgccctcatcgccgcctacggcaaggccaacatcccgcaggaatccgttaagctcttccgcttgatgcccgacctcggcatcgcccgcaccgcgctctcctacaacgccgtcctcaaggccatcctctgccgcggccgagaggccatggccaggcggatctacaacgccatgatcgccgacgccgtcacccctgacctgtccacctacaacacattgatctgggggtttggcctgtgcaagaagatggaggcagccttgagggtgttcggggacatgaaggatcacggggtgacaccggatgtgacgacgtacaacactcttctcaatgcttgggttcggGcgggtgatctggagagtgcccgcaaagtgttcgacgaaatgccaggagctggttttgcacaaaactcggtgtcgtacaatgtcatgatcaagggatatgttgaagcaggtaaggtggaggaggcagtggggctgttctcggaaatgggggagaaggggttgaggttgagcgagaagacgtttgctgctctgatgccagggctctgtgatgatgagggaagggttgtggaggcccggaaggcaatggatgacatggcggagcggcggctcactccaaaggacaagtcagtgtttttgaggcttgtgacgacgctatgccgagcgggtgacttggatggtgcgttggatgtgcaccagaagagtgggcagttcaagcatgttcttgtggatccaagacagtatggggtgctgatggagagcttgtgcgcgggtggaaagtgtgatggtgctgttgaggtgatggatgagcttcttgagaaggggacactgttgagcccaaagagccctgtgcttgaagggccagcttataatccagtgattgagtatttgtgcagcaatgggaacaccagcaaggctgagactttcttcaggcagctgatgaagaaaggcgttgatgacaaggctgcttttaacagtcttatccgtgggcatgcaaaggaaggtgtgccagaagcagcacaggagattcttgccattatgacacgccgtggtgtccgtactgaccctgaatcgcatgcactgcttgttgatagcttcctgaagaagaatgagccagctgatgcaaagacggcacttgacagtatgatggaacaagggcatgtaccgagcccatccctgttcatgtctgtcatggtagcgcttttcaacggtggccgggttcagactgctagcagggttatgaagagtatgattgagaagggggttacagagaacatggacatggctcataagattctggaagctctcttcatgaggggccatgtggaggaagcaatcggccgtgtcaatctgatggtggaaaatggatgcttgcctgatctagataagttgctgattgccctctgcgagaatgacaaagtgatggaggcaCATaagttggctgattttgcattggacagggactttgatgtcagcttctcaacctatgacagagtcttggaggccctgtacactgaggagaagacattgcctgcatactccatgctttgcaagatcaagaacaaaggaggtgtcgtggatcaaaagggttgcgatgccctgatggacagcttaaaagctggagggtactcaaagcaagcagacattttgtctaggatattggcagagaatgcatcatcaacatccaagaggggcaaacgggttgccatgggtgcgtag
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| Protein seq | MSRRHHLHLPLRLLSRNNPSAPLFRHAFSTLDTPEPPPPETEAEAEAVPEVTPAEAAAATPNPPRREEPLHETILYMIRRRPWTTRLENSIRLLSPTLAAPLVHGVISGAAAAGRADLALQFFRFAYRRAGFSPEPATFSLLIPILASHSMLNHARCILLDTMPSFSIAPEEATVAALIAAYGKANIPQESVKLFRLMPDLGIARTALSYNAVLKAILCRGREAMARRIYNAMIADAVTPDLSTYNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFSEMGEKGLRLSEKTFAALMPGLCDDEGRVVEARKAMDDMAERRLTPKDKSVFLRLVTTLCRAGDLDGALDVHQKSGQFKHVLVDPRQYGVLMESLCAGGKCDGAVEVMDELLEKGTLLSPKSPVLEGPAYNPVIEYLCSNGNTSKAETFFRQLMKKGVDDKAAFNSLIRGHAKEGVPEAAQEILAIMTRRGVRTDPESHALLVDSFLKKNEPADAKTALDSMMEQGHVPSPSLFMSVMVALFNGGRVQTASRVMKSMIEKGVTENMDMAHKILEALFMRGHVEEAIGRVNLMVENGCLPDLDKLLIALCENDKVMEAHKLADFALDRDFDVSFSTYDRVLEALYTEEKTLPAYSMLCKIKNKGGVVDQKGCDALMDSLKAGGYSKQADILSRILAENASSTSKRGKRVAMGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.307883 | 13.596560 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0110400 | RBH | 3.964210 | 3.056906 | 4.464467 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02020 | RBH | 2.568351 | 1.953416 | 1.091887 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0110400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0000830 | RBH | 0.488333 | 4.673730 | 4.106466 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0000870 | RBH | 0.192818 | 2.808672 | 2.332466 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0000840 | RBH | 0.316413 | 7.493250 | 6.087099 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0000840 | RBH | 0.112492 | 0.647671 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0000830 | RBH | 4.927425 | 15.107753 | 16.192787 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0009700 | RBH | 4.518381 | 7.621202 | 2.892315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0000850 | RBH | 0.235052 | 0.812040 | 1.147635 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0010600 | RBH | 4.0180355 | 4.683922 | 12.7487975 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0000840 | RBH | 0.141885 | 0.227858 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0000820 | RBH | 0.314213 | 13.023426 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0000870 | RBH | 0.137799 | 0.807117 | 0.943260 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0000830 | RBH | 0.051852 | 6.724639 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G000850 | RBH | 0.326274 | 5.644638 | 2.619643 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0000830 | RBH | 1.186041 | 13.956547 | 5.381508 |
