Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0045480 | OGI:01120900 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:42407642-42410156 | ||||||||
| Gene Symbol | RLCK54, OsRLCK54 | ||||||||||
| DNA seq | catcttgtgctcagattaaattgcacatccaaacacaattttacttacacacatcgttcttgctaatttgccatgcatggctacaaatatcaggcatgcatgcaaatttaattctgccaacctccctgtcgattacgaagttcaggacgtgaagagctggctaccgagcgtgacaatggcggtgccgtcgcccatgacggtggtgaggctcatctccttctccagaatccggtcgagctccgccgcgatcagccgcatcttcggccgccgtctcgccgacgtgctgacgcactgcaacgtcagcccgaccagctccttcatcccctccgacgtgaagctgcctcccagccttggatccgtcacctcgttgttcgaactgaaatgtgactccatctgacaaaatttcacaagaaaaaaatgaatatctgtttctggatgaaatttacttggaagattgtacattaattaatatttggatgaatcatactgaataaatgaattgctaaaagaaatgctgaatatatgcattacccaatgaaccagaggttctcttggttctgaagaaatcaggctcgctgcttctttgccagtgatgagctccaaaagaaaaaccccaaagctgtacacgtcgctgctttcagaaagctgcgccaaggaatgcaccctgagagaaaaaaatagcccatcaaaatataaatgatggtaagacaaaaatattggtgaattacagaaagcagtgctaacatttttacagctctgcacaatgtagttgcagctcatacttctgataatttcagaggcAaaaAGTTCAGTTAAAACGGCACAATGTTCAGGCTTACTCTGGGTCTTGGTAGATGCTGCTGCAAGACGACGACGGATGATGCGACGGCGCGGCGCCGTCGAATCCTCTGAGCAGCCTGTCGATTCCGGCGTCAGCCACCTTCGCGATGAAGTTCTCATCGACCAAAACATTGCTCGTCTTGAAGCCCTTGTGGATCAAAGGAGGCACGAGGCTGTGCAGATGATTCAGACCTGAAAATTTTCGTAGTTTCAGACACTGTGTTGTACACTTTGGTTTGATGAGGAAACACTGCACATGAAAATTGAAATGTTTTGTCACCTTTGGCCGCTCCAATTGCTATTGAGAGCCTCTGCTTGAACTCTAGTCTTGTCATTGACTCTTTGCCGGTGTCTGCTAAACAGTGTAAGATCATTATTGTTTGAAACAAATTTCAAGCAAATTGGGCTTCGAATTTGACAGGAATCATCAACTTTGTTATATTACCGTACAGATGGCCACAGACACTGCCATTGGGCAGGTACTCGAACACAAGCATTTGTAGACCTCCTTCTTGGCAGTAGCCGATGAGAGTGACAACGTTTCTATGCCAGATTTCTGATAGCCGCTTGACCTGAAATTCAGAGCGAATTCATTTTTCTTTGTCAAAAAATGAGAGTGAATTCACTCAGTTACAAATTTTTACAATTATCATACAATCAGAGagaggctatttctaagaataataaagaaaagttacagaggcattcactggcttatctgtgatcaacaactcaatgcaactaataaaatggaatgtgacactgacaagtgacaacaattaaagagcaattttcaggaacaagtgtactgatcaccaactgaaatgtcaatgagattatgactcatatgacgcaatgcagtgatgacgtgacgtcagcacaagtatatgatttttgatgaggcagagtttgcgtgtacctcgtcgacgaagtcctggcgcggcgaggcgacgcggcgcttgacggcgacgacggtgccgtcgagcaggaggcccttgtagaccgggccgaagctgccggcgccgacgaggttggcgtcgctgaagttcttggtggcgtgcgcgagctcctccagcgagaattgcctcgccccctggtactccggcgccgacaacgtccgcccacacctgccccactccactgcccaatcatcaccaagctaataatcagctacagatcgatcgatgctgctgcgaataattaaatttggagaccaaactcgatgtgatcaagttgtgattattgctatatatggacgtatacctagtgtaggaggggtctccgacgagccggtgtcggagttccggcggctacgacgcgccacgcgccaccaccacgccgcggccacggcggcggccaccagcagcgtggcgacggcggcggcaatgccggctaccaccgcggttggcaatgccatgatccgggcgaccggggcatcgaccaccctcgatgatacgatcaagaaccgctatagcttcggcattcatcaatgcagaagcgaactttgcttacctctgccaaagaagaagacgactgatgatgacgacgagagccagcagcagcagcagcaatgtcgtaggattcttagctaggtagcagctagctagctgagctcgtcgtcgcgagcctgcagaattggccggcgaggctggctgtgctctttaaagaatccgtc
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| CDS seq | atggcattgccaaccgcggtggtagccggcattgccgccgccgtcgccacgctgctggtggccgccgccgtggccgcggcgtggtggtggcgcgtggcgcgtcgtagccgccggaactccgacaccggctcgtcggagacccctcctacactagtggagtggggcaggtgtgggcggacgttgtcggcgccggagtaccagggggcgaggcaattctcgctggaggagctcgcgcacgccaccaagaacttcagcgacgccaacctcgtcggcgccggcagcttcggcccggtctacaagggcctcctgctcgacggcaccgtcgtcgccgtcaagcgccgcgtcgcctcgccgcgccaggacttcgtcgacgagGTCAAGCGGCTATCAGAAATCTGGCATAGAAACGTTGTCACTCTCATCGGCTACTGCCAAGAAGGAGGTCTACAAATGCTTGTGTTCGAGTACCTGCCCAATGGCAGTGTCTGTGGCCATCTGTACGCAGACACCGGCAAAGAGTCAATGACAAGACTAGAGTTCAAGCAGAGGCTCTCAATAGCAATTGGAGCGGCCAAAGGTCTGAATCATCTGCACAGCCTCGTGCCTCCTTTGATCCACAAGGGCTTCAAGACGAGCAATGTTTTGGTCGATGAGAACTTCATCGCGAAGGTGGCTGACGCCGGAATCGACAGGCTGCTCAGAGGATTCGACGGCGCCGCGCCGTCGCATCATCCGTCGTCGTCTTGCAGCAGCATCTACCAAGACCCAGAggtgcattccttggcgcagctttctgaaagcagcgacgtgtacagctttggggtttttcttttggagctcatcactggcaaagaagcagcgagcctgatttcttcagaaccaagagaacctctggttcattggatggagtcacatttcagttcgaacaacgaggtgacggatccaaggctgggaggcagcttcacgtcggaggggatgaaggagctggtcgggctgacgttgcagtgcgtcagcacgtcggcgagacggcggccgaagatgcggctgatcgcggcggagctcgaccggattctggagaaggagatgagcctcaccaccgtcatgggcgacggcaccgccattgtcacgctcggtagccagctcttcacgtcctga
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| Protein seq | MALPTAVVAGIAAAVATLLVAAAVAAAWWWRVARRSRRNSDTGSSETPPTLVEWGRCGRTLSAPEYQGARQFSLEELAHATKNFSDANLVGAGSFGPVYKGLLLDGTVVAVKRRVASPRQDFVDEVKRLSEIWHRNVVTLIGYCQEGGLQMLVFEYLPNGSVCGHLYADTGKESMTRLEFKQRLSIAIGAAKGLNHLHSLVPPLIHKGFKTSNVLVDENFIAKVADAGIDRLLRGFDGAAPSHHPSSSCSSIYQDPEVHSLAQLSESSDVYSFGVFLLELITGKEAASLISSEPREPLVHWMESHFSSNNEVTDPRLGGSFTSEGMKELVGLTLQCVSTSARRRPKMRLIAAELDRILEKEMSLTTVMGDGTAIVTLGSQLFTS |
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| Function | Receptor-like protein kinase ANXUR1 [UniProtKB/Swiss-Prot:Q9SR05] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0045480 | OsGoSa_01g0045480.01 | Chr01 | 42407652 | 42410156 | - | NAM | ||
| CDS seq | atggcattgccaaccgcggtggtagccggcattgccgccgccgtcgccacgctgctggtggccgccgccgtggccgcggcgtggtggtggcgcgtggcgcgtcgtagccgccggaactccgacaccggctcgtcggagacccctcctacactagtggagtggggcaggtgtgggcggacgttgtcggcgccggagtaccagggggcgaggcaattctcgctggaggagctcgcgcacgccaccaagaacttcagcgacgccaacctcgtcggcgccggcagcttcggcccggtctacaagggcctcctgctcgacggcaccgtcgtcgccgtcaagcgccgcgtcgcctcgccgcgccaggacttcgtcgacgagGTCAAGCGGCTATCAGAAATCTGGCATAGAAACGTTGTCACTCTCATCGGCTACTGCCAAGAAGGAGGTCTACAAATGCTTGTGTTCGAGTACCTGCCCAATGGCAGTGTCTGTGGCCATCTGTACGCAGACACCGGCAAAGAGTCAATGACAAGACTAGAGTTCAAGCAGAGGCTCTCAATAGCAATTGGAGCGGCCAAAGGTCTGAATCATCTGCACAGCCTCGTGCCTCCTTTGATCCACAAGGGCTTCAAGACGAGCAATGTTTTGGTCGATGAGAACTTCATCGCGAAGGTGGCTGACGCCGGAATCGACAGGCTGCTCAGAGGATTCGACGGCGCCGCGCCGTCGCATCATCCGTCGTCGTCTTGCAGCAGCATCTACCAAGACCCAGAggtgcattccttggcgcagctttctgaaagcagcgacgtgtacagctttggggtttttcttttggagctcatcactggcaaagaagcagcgagcctgatttcttcagaaccaagagaacctctggttcattggatggagtcacatttcagttcgaacaacgaggtgacggatccaaggctgggaggcagcttcacgtcggaggggatgaaggagctggtcgggctgacgttgcagtgcgtcagcacgtcggcgagacggcggccgaagatgcggctgatcgcggcggagctcgaccggattctggagaaggagatgagcctcaccaccgtcatgggcgacggcaccgccattgtcacgctcggtagccagctcttcacgtcctga
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| Protein seq | MALPTAVVAGIAAAVATLLVAAAVAAAWWWRVARRSRRNSDTGSSETPPTLVEWGRCGRTLSAPEYQGARQFSLEELAHATKNFSDANLVGAGSFGPVYKGLLLDGTVVAVKRRVASPRQDFVDEVKRLSEIWHRNVVTLIGYCQEGGLQMLVFEYLPNGSVCGHLYADTGKESMTRLEFKQRLSIAIGAAKGLNHLHSLVPPLIHKGFKTSNVLVDENFIAKVADAGIDRLLRGFDGAAPSHHPSSSCSSIYQDPEVHSLAQLSESSDVYSFGVFLLELITGKEAASLISSEPREPLVHWMESHFSSNNEVTDPRLGGSFTSEGMKELVGLTLQCVSTSARRRPKMRLIAAELDRILEKEMSLTTVMGDGTAIVTLGSQLFTS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0045480 | OsGoSa_01g0045480.02 | Chr01 | 42407642 | 42409000 | - | IsoSeq | ||
| CDS seq | ATGTTTTGGTCGATGAGAACTTCATCGCGAAGGTGGCTGACGCCGGAATCGACAGGCTGCTCAGAGGATTCGACGGCGCCGCGCCGTCGCATCATCCGTCGTCGTCTTGCAGCAGCATCTACCAAGACCCAGAggtgcattccttggcgcagctttctgaaagcagcgacgtgtacagctttggggtttttcttttggagctcatcactggcaaagaagcagcga
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| Protein seq | MFWSMRTSSRRWLTPESTGCSEDSTAPRRRIIRRRLAAASTKTQRCIPWRSFLKAATCTALGFFFWSSSLAKKQR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 42408833 | 42408927 | - | OsGoSa_01g0045480.01 | OsGoSa_01g0045480.01,OsGoSa_01g0045480.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 26.339905 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0935800 | RBH | 0.0 | 0.0 | 0.362181 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g70970 | RBH | 0.0 | 0.0 | 0.090345 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0935800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046240 | RBH | 0.0 | 0.0 | 0.379649 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0045750 | RBH | 0.0 | 3.645192 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046140 | RBH | 0.0 | 16.283745 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0045660 | RBH | 0.0 | 1.363778 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045240 | RBH | 0.0 | 33.094883 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0676200 | RBH | 1.248744 | 0.5183205 | 0.3234265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0044760 | RBH | 0.0 | 2.406088 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0678000 | RBH | 1.1968895 | 0.0646015 | 2.302166 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045200 | RBH | 0.052936 | 0.155283 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045150 | RBH | 0.0 | 11.080277 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014510 | RBH | 0.0 | 4.784025 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045490 | RBH | 0.0 | 0.586844 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045200 | RBH | 0.0 | 14.857862 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G045570 | RBH | 0.0 | 5.323469 | 1.006078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045280 | RBH | 0.0 | 16.180099 | 0.0 |
