Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0042030 | OGI:01114160 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:39709425-39713038 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaagaggggcgcggcgccgcagttggaggcggagagggcgacgaagagaggagcggcgctagggcggcgcggcgccgccgttggaggcggagagggcgacggtgagggccgccttaagcgtcgcacggcggagtgcgtggccgcgcaggagcaggagctcgtcggcgttgttaaatagaggagcacacgtaagctattttgagcactgtaggctcaatttaagtagttttgttatggggattctcttggatttggtgttatttagtagttttgtaggacaatattgttggatccgatggaatttggggctattatatttgctagtggggggacagggatgtttgggatctgtatgtaggggatttaaataagcagcgggttgattgtttactaaaatgtgcatgcaggactgttgtagtttggtgtgatggatttgctggagaaactagtggttaggttccatttcaatggggagtttgtgacatctgggagggagaagaagtattgtgggggtagagaggcattgtcctatattgatagagataagatttcactgccagagatatttggacacttgcgagaccactgtaaggtgatggaaggtacaatgttgcattggttgttccctgggaaggatttgaatagtggacttagagctttgttggatgatacggtttgtaagttaatggcagattgcatagatgatttaggtgtggcagaggtatatgctgaagagccaaccatagttgacctatgttactcatcagatgatgacagcagttatgaggctgatgagagtgaagatgattcagaggagatggaagtggcagaaggtggtatggagggtactgaagatgcagtagctcttgaaggaggtgaaattaggaccaagacaaatgaagttaggaagggcaaagccattagttctgaaattcctgagaaccgacttgtggtttataattgtgacaatgatccattggcaagccaggcaccttcagagagtgagtctaatagtgagtacattcctggagatgatgcagggtcagatgatgatgaggagatcatagagatagagaagcactacaaggatatgaagagaaaggtgaaggcaggacagctggataatttagatgatgtatatcttggaggacaaggatggcaaaacatgaataatgaagctggtggggaaggtgatggcattgctgctgagagcccagaggatgaatcaatggaggagattggcacagatggtgaggttagcactaaggaaaacaagttcccaagatacaaaaaaaaggtagggactccttgttttgaactgggcatgaagtttagctcaaagaagcagtttaagaaggttgtcactaagtatgctctagctgagaggaaggttataaacttcatcaaggatgacttaaagagggttagggcaaaatgtgattgggcaagctgtccttgggtatgcttgctgtccaagaatactaggagtgatagctggcagatagttactcttgagagcttgcatgcatgtcctcctagaagggataacaaaatggttacagcaactaggattgcagagaagtatggaaagattatccttgccaaccctgggtggaatttggcccacatgaaggcaactgtccaagaggagatgtttggtgaagcatctgttccaaagctgaaaagggctaaagctatggtgatgaagaaagcaatggatgcaaccaaggggcaatatcaaaagctatacaactaccagcttgagctccttaggagtaaccctggcagcacagtagttgtcaacagggaaataggcactgatccacctgtgttcaaaaggatttacatatgcttggatgcctgcaaaagggggtttgtagatgggtgcaggaaggtagttggcctggatggctgcttcttcaagggggcaacaaatggagagctgttgtgtgctataggtagagatgcaaataaccagatgtaccccattgcctgggctgttgtgcacaaggaaaataatgaagaatgggactggttcttggacttgctgtgcagtgacctcaaagtgttggatggaactggatgggtgttcatttcagaccaacaaaaggtacattattattgtgttaacattaattttcaaatgctgcatgtttgtgagatgataactaaatgcaattttgtttacaatgcagggaatcatcaatgcagttgagaaatgggcaccacaagctgaacacagaaattgtgctaggcacatttatgcaaactggaagaggcatttcagtgacaaagaattccagaagaaattttggagatgtgctaaagctccatgtaggatgctcttcaacctggcaagggcaaagctagcacaggtgacacctgctggagcacaggccatacttaatacccatccagaacattggagccgtgcatggttcaagttaggctcaaactgcgattcagttgataataatatgtgtgagtcattcaataaatggatcctagaagcaagattttttccaattatcaccatgctagagacaataaggaggaaggtgatggttaggatttcagagcagagaaaggtttctgctagatggaacactgtggtctgtccagggatcctaaagaaattgaatgtgtatatcactgagtcagcatactgtcatgctatatgcaatggagctgacagctttgaggtaaaacaccacaccaataggttcactgtgcagctggacaagaaggagtgttcttgcaggtattggcaactctctggtcttccatgcccccatgcaattgcatgtatattttacagaactaacacactgaatgagttcactgctgattgctacaaagtggatgctttcaagagcacatataagcattgcctactaccagtggagggcatgaatgcatggccagaagatgatagggagccactgactgcacctgggtatataaagatgctaggcaggcccagaactgaaagaaggagagaggctcatgagccagctaagccttctaaggcatcaaaatttggcaccaaggtcagatgcaggacttgcaagcaggttggccacaacaaatcaagctgtcacaaacacaatccagctcaaactgcaggtggcagttcacagcaggttgcaacacccagccacaatcttgtactgtccaacaccccccagagttgtgcacaaagtagaaaaaggaaggcaactggcaccttgactaccactacttcagcctctcagtcaaaggcaaccaagccgacaaaaaaggtaagctaaatcagccatgccatttcattgtgcatattttgatttaaactaatgtgtgcttcatctgattctacaggcacaaatggagcccctccaaattgtcagagtgaatgcaagggcaaaaatttctacaccttctggtggcttagctagggttgatttgcaggccaatgttgcaggctccaacagctctacaagtgcagctgtcactgttacttcagggaaagcatctgtatctgtttcagctcaagaacctgccaggacaactacaaagaacaaagctaaagtaccactgcttcttctccctccatgggaatctgacaaactatga
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| CDS seq | atgaagaggggcgcggcgccgcagttggaggcggagagggcgacgaagagaggagcggcgctagggcggcgcggcgccgccgttggaggcggagagggcgacggtgagggccgccttaagcgtcgcacggcggagtgcgtggccgcgcaggagcaggagctcgtcggcgttgcaacacccagccacaatcttgtactgtccaacaccccccagagttgtgcacaaagtagaaaaaggaaggcaactggcaccttgactaccactacttcagcctctcagtcaaaggcaaccaagccgacaaaaaaggcacaaatggagcccctccaaattgtcagagtgaatgcaagggcaaaaatttctacaccttctggtggcttagctagggttgatttgcaggccaatgttgcaggctccaacagctctacaagtgcagctgtcactgttacttcagggaaagcatctgtatctgtttcagctcaagaacctgccaggacaactacaaagaacaaagctaaagtaccactgcttcttctccctccatgggaatctgacaaactatga
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| Protein seq | MKRGAAPQLEAERATKRGAALGRRGAAVGGGEGDGEGRLKRRTAECVAAQEQELVGVATPSHNLVLSNTPQSCAQSRKRKATGTLTTTTSASQSKATKPTKKAQMEPLQIVRVNARAKISTPSGGLARVDLQANVAGSNSSTSAAVTVTSGKASVSVSAQEPARTTTKNKAKVPLLLLPPWESDKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0042030 | OsGoSa_01g0042030.01 | Chr01 | 39709425 | 39713038 | + | NAM | ||
| CDS seq | atgaagaggggcgcggcgccgcagttggaggcggagagggcgacgaagagaggagcggcgctagggcggcgcggcgccgccgttggaggcggagagggcgacggtgagggccgccttaagcgtcgcacggcggagtgcgtggccgcgcaggagcaggagctcgtcggcgttgcaacacccagccacaatcttgtactgtccaacaccccccagagttgtgcacaaagtagaaaaaggaaggcaactggcaccttgactaccactacttcagcctctcagtcaaaggcaaccaagccgacaaaaaaggcacaaatggagcccctccaaattgtcagagtgaatgcaagggcaaaaatttctacaccttctggtggcttagctagggttgatttgcaggccaatgttgcaggctccaacagctctacaagtgcagctgtcactgttacttcagggaaagcatctgtatctgtttcagctcaagaacctgccaggacaactacaaagaacaaagctaaagtaccactgcttcttctccctccatgggaatctgacaaactatga
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| Protein seq | MKRGAAPQLEAERATKRGAALGRRGAAVGGGEGDGEGRLKRRTAECVAAQEQELVGVATPSHNLVLSNTPQSCAQSRKRKATGTLTTTTSASQSKATKPTKKAQMEPLQIVRVNARAKISTPSGGLARVDLQANVAGSNSSTSAAVTVTSGKASVSVSAQEPARTTTKNKAKVPLLLLPPWESDKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g68990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018700 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0018590 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0018510 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018720 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041820 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0634200 | RBH | 0 | 0.0199365 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041450 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0634600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0041760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003710 | RBH | 0.0 | 0.0 | 0.021429 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0041850 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031840 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033370 | RBH | 0.0 | 0.0 | 0.0 |
