Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0033620 | OGI:01096440 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:33268789-33273306 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggcggctgtttcattcgcgaatccttcacggtcggactcgtcttctccggtctccccaaatcgccaaatctaacctctcgcctcgacccccAccccctctacgcctcgccatggcgtccgacaccaaggcagtagccgctctcttctccatgtacaacgacgacgaggaagaggatgacggcgacgagcccagacccccttcgccgcccgccgccgcaacctcctcgtcgccctcacctcagaccgaaggcgagggctcaaaccctaaccccaacgctgccgcttcttcggcgcccccatcccctcccctcgccgaggatccggccggccgcagaaccctagccagcccctacccctcgccggggctcccgccgctgccttcgcgccgctcgtcctcgcccttcgcgatttcgtCccccCTCCCCGCTCCGCCCCGCCGCGGCCATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGTAGAACTAGCAACGTATATGTTTAGTGATGCTGCTTGGAGTTTCCAACTTTCCTGAATTGATGTTGTTATGGTCTGGTTGCAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGTAAGCTCCTAGCCTGCTGTATTTGTTGTATTGTGCTATGTTCAGCATACCGTGCTAATATCTAGTGCAAaatcgagatgtccagctagtatgcagaaattgtgattttaaggatttatgatcagtcgcatactcggtattgacggttatgtaatttagtatcaactagaaaaaatgcccgtgcgttgcaacgggtgaaggctattttaatcttattattgttatatggtttatttaagatgaaattcactgttaaattcgcttagatatatatattttattagaaaatcatgagctgcaattaggaatccgaccatctcaagtagcatgcgagttttttaaagagatttcctatacaattccttttgtatttccaaaagcgaataaacttaaaaaccgactcaaatacggatttgtattttcaaaagcgaacgaacttgaaaaccgactcatacacggatgatgtaccaaagtaccggcaaaaacatctttaaTttttataatagtagagatttatcacaacgttagcactatttaggatatgtcatcaatgacagagcacatatcagaaaacatgtttgtgctcaaatggtttgtttacttgtagttgacaaccatatccaagaaaggtggagagctgaaaacatagacaaacacttgaaaataataaatgtttgagatattttgttttcacataatcaggctatgcattatttgctaattacctcagccagaaacatgtaggttccaaaatacaaagaatgaaccttgttttacagatataccacaatgacatgcctcaagatcttttgcatttgtagtcgtgtgttagtagtcagtaccaaaatgttatgtgcagaacaagaatgcatgcatttcttttgttcatccatggacgaaactctcaatatcatgacagatttAtttcctttggtgattatatattatgTTtctggccattctagaaaacattttggtgatttagtggtctcgttttaccttttcgatgaaactgaattattataacctctaaatttgcaatctagatataatctaatttatatttTAtccctctcctatagggaattatgaAGaaaagactctctcaggtattgttcacatactgaccccaaatatacgatcagaaatgtctcagcagaacgatgcacctgaacagaatcaagtaggggcagctgcagcaatgagtgtaactggagcagaaatggaagatgttcaggtggaagaagctgctgataacatgcagaatgatgatcctctgagtcgtttccttcctcctcctgtgactgcaaaatgttctgcagcactacaggtttccttcttaATaaaataatatttcctacatgttctacttccatgtaaaaaaattatcacatttttatgcagaacattgtgctcccttgggaccatattactatcctttggatttaataaactccattgtctagaataaatttgttctcttgctcacataagccataccctagaaaccatttcatgcatttttcatggtattattgagatctggctgtgccatagctgtatgcgttgttctccttttgatttcttacatgcttgtaaatttgtttatctagctaatgactcttgctcatttgtaATTattatttctgaacaaaaggtcgatattttgaagcccttctgttgtttttagtttgatatatgcttctcttttcaagtcctgtaaacacactgcaacagcatggcctttcacatgacatgcatactgcttagaaattagaatgcacatccatacaatctatttatttggctattgcattaaacatttatttatgttccaatgctttggatacagcaaaagatcaacaagttccttgcgtacaaaagggctggaaagagcttcaattctgaagtgcgcaatagaaaggactacaggaatccagactttttgcagcatgctgtgcggtaccaagaaattgaccagatagggacctgcttcagtaaagatgtttttgatccttatgggtacgatagaagcgattactatgatgagattggtatgttatagtcgaggtttatccattatgctgtacttgtggattatatagtgcaattttgacaaacaattgaacattagaataCAGcttcacttggAaaaaaaaaaagaatgtaggatgtGtttttaaacctcaaagtaacttccaatcttctttatgatatgcttgtaaacctgcagcttgcgtctattctagggGGAgggtggaattcttgcaatgtgcttgatttgttgtgttagcaacatgtgcatacaaaataaactagtagatgattggacaattctgaaatgatttggtgaatggtcgctcttatgttgagatgggaattgttgatctaggacaacctcgcgaagtggttcttcactcataaactgaacttggagattagttatttatacatatattatgcctgtggagtcaatagtgaatgttttagttctttcttgagaaatttcttctaagacttgcgcaagaatatatcctaggcatgacgagcctcctattttctacagaagctgatatGAAgcgtgaagttgagagaaaggaactggagaagAAaaagagtggaaaggttgactttatcactggaggagtacaagctccaattagtgcggcaataccgaaaattgcaggtatagtacatacaaacgaaattatgataccaatctgtcaattttgtattttggatgtttcagtgctcattgcatcttttacagctgctgtatcagcagcagctgctgctggtgcaccattggtttcgatatcgggagaaggcgtacagaaagaggctaggccaaacaagaagtcaaaatgggataaggtttttaaacctgaaccaatatatttacatactgcagtgtacatcaggactgactgttgcttttctgttatttattactaggttgatggggatattaagaaccctgtggctccaagtggacttgataatttgtcagcagccgcgcttctaacttcagcaaatgttggtgctggatacgctgcttttgcgtaagttctcttatttcagctgtcagaacttggaacagatggtttgcctctatgctcacggtctattagcgtacaattcctttttgtattatcttgctgtcagtgccaatcagaaatgcaatccaaagctaattgaactgttcatagctgtgccattgttttccctatgaatattttgtctcagagaactacatccatatgtttttcatactgttatgatgcagtggtaatatcaattacagtgcataaaatgtatggttgatgcgttagttactctgtgtaacttaaacatcttacttttaaccattaaaacaacaggataactatatgaagatttgttatacataggttttatgttagttgtttgagcagcttttatcttgataaattccagcaccccTctctgttgttcgtaacattgatcattttactttcaggcaacaaaagaggaaagAagctgaagaaaagaaaacaagcgatcataagtcagacagaagatcgtagtgcttctctccttttcttttgagttaaggatgtactatttggaggttttcaattacatagccttataatgtgaaaaaaaaaacttcaagaattggccaaaaaacatgcttacacaatgtgttccctatgtgttgctatttttactataagctgctttttgggcgtattggcatttctcaagggtgacatactaacctcatcttgcaatgtttaggacattttcttgattttgggcggatttaaactcaataaatttccgctttcccgtcggta
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| CDS seq | ATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGggaattatgaAGaaaagactctctcaggtattgttcacatactgaccccaaatatacgatcagaaatgtctcagcagaacgatgcacctgaacagaatcaagtaggggcagctgcagcaatgagtgtaactggagcagaaatggaagatgttcaggtggaagaagctgctgataacatgcagaatgatgatcctctgagtcgtttccttcctcctcctgtgactgcaaaatgttctgcagcactacagcaaaagatcaacaagttccttgcgtacaaaagggctggaaagagcttcaattctgaagtgcgcaatagaaaggactacaggaatccagactttttgcagcatgctgtgcggtaccaagaaattgaccagatagggacctgcttcagtaaagatgtttttgatccttatgggtacgatagaagcgattactatgatgagattgaagctgatatGAAgcgtgaagttgagagaaaggaactggagaagAAaaagagtggaaaggttgactttatcactggaggagtacaagctccaattagtgcggcaataccgaaaattgcagctgctgtatcagcagcagctgctgctggtgcaccattggtttcgatatcgggagaaggcgtacagaaagaggctaggccaaacaagaagtcaaaatgggataaggttgatggggatattaagaaccctgtggctccaagtggacttgataatttgtcagcagccgcgcttctaacttcagcaaatgttggtgctggatacgctgcttttgcgcaacaaaagaggaaagAagctgaagaaaagaaaacaagcgatcataagtcagacagaagatcgtag
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| Protein seq | MPPADLPRPPRRGPLAIVDYAHDETAMSPEQEDGEINGIDRSGLDAQVAEGNYEEKTLSGIVHILTPNIRSEMSQQNDAPEQNQVGAAAAMSVTGAEMEDVQVEEAADNMQNDDPLSRFLPPPVTAKCSAALQQKINKFLAYKRAGKSFNSEVRNRKDYRNPDFLQHAVRYQEIDQIGTCFSKDVFDPYGYDRSDYYDEIEADMKREVERKELEKKKSGKVDFITGGVQAPISAAIPKIAAAVSAAAAAGAPLVSISGEGVQKEARPNKKSKWDKVDGDIKNPVAPSGLDNLSAAALLTSANVGAGYAAFAQQKRKEAEEKKTSDHKSDRRS |
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| Function | SAP30-binding protein [UniProtKB/Swiss-Prot:Q9UHR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0033620 | OsGoSa_01g0033620.01 | Chr01 | 33268789 | 33273306 | + | NAM | ||
| CDS seq | ATGCCGCCGGCCGACCTGCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTGGACTACGCTCATGACGAAACGGCCATGTCGCCGGAGCAGGAGGATGGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGggaattatgaAGaaaagactctctcaggtattgttcacatactgaccccaaatatacgatcagaaatgtctcagcagaacgatgcacctgaacagaatcaagtaggggcagctgcagcaatgagtgtaactggagcagaaatggaagatgttcaggtggaagaagctgctgataacatgcagaatgatgatcctctgagtcgtttccttcctcctcctgtgactgcaaaatgttctgcagcactacagcaaaagatcaacaagttccttgcgtacaaaagggctggaaagagcttcaattctgaagtgcgcaatagaaaggactacaggaatccagactttttgcagcatgctgtgcggtaccaagaaattgaccagatagggacctgcttcagtaaagatgtttttgatccttatgggtacgatagaagcgattactatgatgagattgaagctgatatGAAgcgtgaagttgagagaaaggaactggagaagAAaaagagtggaaaggttgactttatcactggaggagtacaagctccaattagtgcggcaataccgaaaattgcagctgctgtatcagcagcagctgctgctggtgcaccattggtttcgatatcgggagaaggcgtacagaaagaggctaggccaaacaagaagtcaaaatgggataaggttgatggggatattaagaaccctgtggctccaagtggacttgataatttgtcagcagccgcgcttctaacttcagcaaatgttggtgctggatacgctgcttttgcgcaacaaaagaggaaagAagctgaagaaaagaaaacaagcgatcataagtcagacagaagatcgtag
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| Protein seq | MPPADLPRPPRRGPLAIVDYAHDETAMSPEQEDGEINGIDRSGLDAQVAEGNYEEKTLSGIVHILTPNIRSEMSQQNDAPEQNQVGAAAAMSVTGAEMEDVQVEEAADNMQNDDPLSRFLPPPVTAKCSAALQQKINKFLAYKRAGKSFNSEVRNRKDYRNPDFLQHAVRYQEIDQIGTCFSKDVFDPYGYDRSDYYDEIEADMKREVERKELEKKKSGKVDFITGGVQAPISAAIPKIAAAVSAAAAAGAPLVSISGEGVQKEARPNKKSKWDKVDGDIKNPVAPSGLDNLSAAALLTSANVGAGYAAFAQQKRKEAEEKKTSDHKSDRRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.939351 | 11.063251 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0759700 | RBH | 2.543346 | 1.943270 | 6.001562 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g55490 | RBH | 1.633233 | 1.241598 | 1.457423 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0759700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034410 | RBH | 1.233330 | 13.309259 | 7.046740 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0033930 | RBH | 0.298557 | 1.868155 | 3.066653 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0034360 | RBH | 2.271158 | 9.377995 | 11.103287 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0033660 | RBH | 0.437659 | 0.400979 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0033410 | RBH | 8.988600 | 11.510359 | 14.625180 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0531500 | RBH | 8.7403035 | 15.0616885 | 17.3503685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0033140 | RBH | 0.226408 | 0.918131 | 2.180304 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0526600 | SBH | 13.0925565 | 19.2421235 | 39.899319 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0033310 | RBH | 0.399009 | 0.106214 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0033370 | RBH | 0.645560 | 2.608837 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0033650 | RBH | 0.809433 | 0.881698 | 2.272441 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0033500 | RBH | 0.509872 | 6.414819 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G033950 | RBH | 1.056438 | 3.867302 | 2.350879 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0033610 | RBH | 0.821783 | 26.244316 | 12.939957 |
