Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0023950 | OGI:01074660 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:25086178-25092290 | ||||||||
| Gene Symbol | OsRPK1, OsJNipponRPK1, OsI219RPK1, OsI9311RPK1 | ||||||||||
| DNA seq | attttttgcgatagaggagcactatagtagtgccatggacaatagaaaggccatggaaatgattagttttggaattcctttgctcccagctcaacatgtgattactcaattctagaacaacataaacgaaagaaggatgaggcacaatgatcacaaagggggcagacgatgaaatgaaggtaaaaaaaagagaagaaaaaaaatacatttacttggaagaatgaagcctgagaaaaatacaatttgatccaacaaaacaatacccaggaaaagaaactgaagaagagaagagaagagaaaaaaattggcaaagaacagagcattggcatacaggcagccaaagaacctatgcaatttttaacctttaccctgaccaagaaggtgtcttccgccgccgccgccggCGTcgtcacggcgtcggggcggccggaggcgtgccccgcgaccgctcctcctccgacgttccccgcacgccctcctcgctctcctccgtcgtcgtccggccgtggccgccgccgatctcctcgatcatcctgaccacgtcgggggcgtcgggccgcgcgtcgggcacggtggcgacgcacgccatggccacctggagcagcgccaccatctcctcctccgcgctcgcgccgagccgcaccagctcgacgtcgaacacctccgccgtccactcctcccgcaccacggactgcacccaccgtgggaggtccagcgtgccgtccccttccagggacgcgtgcgtcggcgacttgccggtgaggagctctaggaggagcacgccgagggagtagacgtccgccttgtacgtcggccgccgcgtgtccaccacctccggcgcgcggtacccgccggcgcccgggcgcgccgacgacggcgcgaagatcgggtggaggcagaagtccgagagcgccgccgcgtcggcgtccggccggagcaggacgttggaggacttgacgttgccgtgcacgaggctgtgcaccgtgtgcaggtgcgccagcccgcgcgccgccgacagcgccgaccgcatccgcgcgtcccagtccagcggcgtcttgccggaCccccggctccctgggcaaaaaagaaaacacaactccggtgagaaatttacattctggcattctccaatcaaacacctccaaacttaatgcaatgagtatctgtaaaaatgaaagactgaaaataactctgccatagtactaccatccaattaccaatggaagaatgcatttacattccaccatgatctttggtgaatgttgcaaggaaataacaataaaaaaATataattagtgatccttcacaagagaaaatttgctgccatcacttggttgaaatcgcagaatactcctggttgttgtattggattcttggtaaggatagacagagaaggttgatatttttattgatggggtgaataaaaatctcatcttggactggtccagagttggtcactgttaaagaaatcgggagtaacaaacaagtagtatgtcttaaacaaaaaatgtagtgctaacttgcatgcatgggatggggtgactgttgcaggctatgcattgcaagaggacaagacatcttcattggttaagtacagttggacagcacaaacaagcacacgactaatcaatcagcgcaatagttggttcagtaggtctactaaagaagagaataaatatatcagtgcattacatagattgcatcctagcaagtactactataaatagactattagctgttcatctggccatcaattaagcatatctgttaggtagcctagtacattacagaccagcaaacacaccgaattgttagcttcttgtctagtaaaagcaaggagaaaatcaatggtgcgactgatcctacagcaatagagtatgcatcatcatttctaaatgtgcaaaactgaatttttctgccaagtgttttcaaaacattgccgagcaattaggcaaatagagctgatgagcaagtgagcttgctaacccactgggcaagatccaaaagcaaagctgtggtctctactctcttgtcaagtagtggagaacattgacgagcaggtagcagagggcactggttacacatatgtgggtggcagcactgaccggtgccatggacctactatagctatagtaccctgcaattggaggccaggcgagcaagaacatgcatgtgcaactgcaattgctcctgtgacccttctctgaattaccagcaagccgtagtgcagagttgttgccactggcagtccgatcccaacccaactcaaaaaccacattctctcaactttgatatctgtgaacactctcaaggctctacagcactccagctgatacaggctgcagctccaaattttaactgttttttctctgggagaaacggagccagaggattaggacgccaagacagtgatggacactaacaggcaaccacctcgactgtttacgagttcatcgattcaactatcaaccgtcgttttccagggagttgggggtacgtttaagcgcaggcaattaaggagcccgatcaggtgaggcaaacacacacacacaccacaacacggcgtcaaccccgtgtcgcggccggccgcacgaacagctccgcaataatctcacggattctggtgaagcctagccaagccaagccaagccacgccgaagccatgaaggcgcacgtagtagccgagcaaggcggccatggccccatgtccatgatgacaactcacacacactacaatacacttgtccattattattctactcgcctcaatcttgcatgctagctactcctaaggtcctatttttcctaagcaaaaacaccctatcacatcgaatgtttgacacatgcatgaagtattaaatataaaaaaaataaaaaactaattacataaattgcgtgtaaattgagagatgaatattttaagcctaattgctacattatttgataatgtggtgctacattaaataattgctaatgacggattaattaggcttactaaattcgtctcgtagtttataggcggaatttgtaatttgttttgttattagtctacgtttaatacttcaaatgtgtgtctgtatatccgatgtaacacgctaaaacttttcaccgctgtgtctaaacacagccttaagtcatagctagatggggactgtaccaacgacaatatatgctaagcgtacaaggataaataaaactctcctccctcgttaccctaccattgaagaatatattgacttcgagggaaccactactatgcacgaaggcccggccggccggcagtacacattacgcacgcacacagctagaattcgtggcaacattttacacacctttaaacacccagggggtgtacactgtaccacgatgtacaggcagcaggacaggattaagtggagaggcactagacattctctactctacggtaaaaagctgggccccacacgccagggaccccaaggaaaagtactgcactactactacaccttttctccctccgcatcaagtgcccatgatgatgatgatactatggtgccacgaagagtacaaaaactaccaggccaatgggtggttatgagccccggggggtccccgtagcaaatttgcagcaacctgcgcgtttctgaactttgttctgggtttacaaaaccgtatatatctcgtggttactgctcggttttttgggtaacgacatggttatcgcggtaaccgtggggtggaggtaaacccatctcaaacggcagtttggtgaaacctggtcccggggcttgatcgcaacgacacgatacgctacgagtactactactcgtcactgcaggtgcaggtgtagcagagctgcaagtgtatcggagtagtagcagcagccaatgtgatggcacgcaccggtccagcgtgaggcggagcatgggatggaccagaccgtcgcgggcgctttacagcccaaacctcgcagtcatcactccctcgcacgcaccaccaccaccaccttccacacccacaacacacttccgcatcaaagaaaagcgacgcgaaaaaaaacaaataaataaacgagaaagagaaaagagagagggataaaaaaaaaagaaggaaaagcgcgggagccaccacgccaccgtccacatgccgccatggcgaggaaaagaggagagggaatttcgtcctcctcttccctcccatggaggctttggctttcgctcctgctcctacctactaccttgctcgcgaacacccatcaatgccgccgaattccgcgacgatttctgcgtctacgatgcacgcacgcactcatcgatcgcttcttggacttggtgatttccgctcgcgcgtaatgccgatctcatgtcgaaaaatccccgcgcaagaaagcgaccaaaatacgatttggcaatggcaatgcggtgacgcagagagagagagagagtagactgaccgtggagcatggcggagaggctgccgttggggaggtagtcgaagacgaggagcttctcgtccttggagaagtagtaggcgcggacggggaggacgttgcggtgctccaccttgccgagcgcgtccatgtgggcgtcgaactcgcgccgcgccaccgccacgtccttgagccgcttcaccaccaccgtcgtcccttcctccagcaccgccttgtacgacgtccccacgctccccttcccgagcacctccgccgacgcccgcagcaggtcctccaggtcgaagctgtacccggcccccttccccacgaacaccagcctgctcggctccgccgccaccgccgccaccgccgccgcggccgacccggacgcgccgcccatgtcctccttgGACgacgacgtcatgcccgtcccctcgccggaccccggcggggggacacctctcgcggcggcggcgcccgcacccgccgccgccgccgtgctcttcggtccctcgctggcgcctcgccgccgcttggacaccgcgcagagcacggcggcgacgaggaggagcagcgccagcacgacggcgcccacgacgatgccggcgattgcggcgccggagagcctccgcttcttGgaggaggatgccgccccggggacgtcggcggggctcaccccgggcgacggggacGgggacgggaagaacgacttgcagggcgggagcggcgagccgcagagctggaggttgccggcgaagtcctcggccgggaagcgcgcgagcgacgccgggatggagccattgaggttgttgtcggagacgttgaagacggcgaggctctggatgctgatgctggggatgttcccggagagcttgttgccgtcgaggcggagagcgcggagcgaggtgaggttgttgagcgtgaaggggatgggccccgagaggttgttgctggagaggacgagcctctcgagggcggcgagcttgctgaccgccggcgggatggcgccggagaggaggttgttctggaggaagaggaggcggagctgggggagctggagcacgtcgtcggggatgccgccgaggatgcggttggagcggagggagagcacctgcaggttggtgaggcggccgagcgtgcccggcgggatggcgccgatgagccccacgccggggagccgcacctgcaccaccgtggcgttcccggcgtcgcacgtcaccccgacccacccgcacgccgacgtcgaggagttccacccgagacgccgctcgtgcggcgtcgccgccaggaacgccagcagcgccgaccgctcgctcggcggcggctccgcggccacgagctcggcagcagccacgaccacgaccaccaccagcaccgccgccgccaccgccctcgtcacgacgccggccatcgcgtcgcacagcagctggacacggctacgggcgaggaggcatcggagtgtgaagctagcaaactgctgcggatacgaccacactgtgggttagcgagagaagtggtgggaaaatccgggagaatgtgcgtgtccgggagcgttttatgcagtggcgtggtgtgctatactagcagcagcagtaggagtacacactacagagcagccagccagcgcggccggatcggcaggcagtggcgcatacgatgccgtggtggtaaagcccgtgacgctgggcgtctcgcgggcgtgtgc
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| CDS seq | atggccggcgtcgtgacgagggcggtggcggcggcggtgctggtggtggtcgtggtcgtggctgctgccgagctcgtggccgcggagccgccgccgagcgagcggtcggcgctgctggcgttcctggcggcgacgccgcacgagcggcgtctcgggtggaactcctcgacgtcggcgtgcgggtgggtcggggtgacgtgcgacgccgggaacgccacggtggtgcaggtgcggctccccggcgtggggctcatcggcgccatcccgccgggcacgctcggccgcctcaccaacctgcaggtgctctccctccgctccaaccgcatcctcggcggcatccccgacgacgtgctccagctcccccagctccgcctcctcttcctccagaacaacctcctctccggcgccatcccgccggcggtcagcaagctcgccgccctcgagaggctcgtcctctccagcaacaacctctcggggcccatccccttcacgctcaacaacctcacctcgctccgcgctctccgcctcgacggcaacaagctctccgggaacatccccagcatcagcatccagagcctcgccgtcttcaacgtctccgacaacaacctcaatggctccatcccggcgtcgctcgcgcgcttcccggccgaggacttcgccggcaacctccagctctgcggctcgccgctcccgccctgcaagtcgttcttcccgtcccCgtccccgtcgcccggggtgagccccgccgacgtccccggggcggcatcctcctcCaagaagcggaggctctccggcgccgcaatcgccggcatcgtcgtgggcgccgtcgtgctggcgctgctcctcctcgtcgccgccgtgctctgcgcggtgtccaagcggcggcgaggcgccagcgagggaccgaagagcacggcggcggcggcgggtgcgggcgccgccgccgcgagaggtgtccccccgccggggtccggcgaggggacgggcatgacgtcgtcGTCcaaggaggacatgggcggcgcgtccgggtcggccgcggcggcggtggcggcggtggcggcggagccgagcaggctggtgttcgtggggaagggggccgggtacagcttcgacctggaggacctgctgcgggcgtcggcggaggtgctcgggaaggggagcgtggggacgtcgtacaaggcggtgctggaggaagggacgacggtggtggtgaagcggctcaaggacgtggcggtggcgcggcgcgagttcgacgcccacatggacgcgctcggcaaggtggagcaccgcaacgtcctccccgtccgcgcctactacttctccaaggacgagaagctcctcgtcttcgactacctccccaacggcagcctctccgccatgctccacgggagccggggGtccggcaagacgccgctggactgggacgcgcggatgcggtcggcgctgtcggcggcgcgcgggctggcgcacctgcacacggtgcacagcctcgtgcacggcaacgtcaagtcctccaacgtcctgctccggccggacgccgacgcggcggcgctctcggacttctgcctccacccgatcttcgcgccgtcgtcggcgcgcccgggcgccggcgggtaccgcgcgccggaggtggtggacacgcggcggccgacgtacaaggcggacgtctactccctcggcgtgctcctcctagagctcctcaccggcaagtcgccgacgcacgcgtccctggaaggggacggcacgctggacctcccacggtgggtgcagtccgtggtgcgggaggagtggacggcggaggtgttcgacgtcgagctggtgcggctcggcgcgagcgcggaggaggagatggtggcgctgctccaggtggccatggcgtgcgtcgccaccgtgcccgacgcgcggcccgacgcccccgacgtggtcaggatgatcgaggagatcggcggcggccacggccggacgacgacggaggagagcgaggagggcgtgcggggaacgtcggaggaggagcggtcgcggggcacgcctccggccgccccgacgccgtga
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| Protein seq | MAGVVTRAVAAAVLVVVVVVAAAELVAAEPPPSERSALLAFLAATPHERRLGWNSSTSACGWVGVTCDAGNATVVQVRLPGVGLIGAIPPGTLGRLTNLQVLSLRSNRILGGIPDDVLQLPQLRLLFLQNNLLSGAIPPAVSKLAALERLVLSSNNLSGPIPFTLNNLTSLRALRLDGNKLSGNIPSISIQSLAVFNVSDNNLNGSIPASLARFPAEDFAGNLQLCGSPLPPCKSFFPSPSPSPGVSPADVPGAASSSKKRRLSGAAIAGIVVGAVVLALLLLVAAVLCAVSKRRRGASEGPKSTAAAAGAGAAAARGVPPPGSGEGTGMTSSSKEDMGGASGSAAAAVAAVAAEPSRLVFVGKGAGYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVAVARREFDAHMDALGKVEHRNVLPVRAYYFSKDEKLLVFDYLPNGSLSAMLHGSRGSGKTPLDWDARMRSALSAARGLAHLHTVHSLVHGNVKSSNVLLRPDADAAALSDFCLHPIFAPSSARPGAGGYRAPEVVDTRRPTYKADVYSLGVLLLELLTGKSPTHASLEGDGTLDLPRWVQSVVREEWTAEVFDVELVRLGASAEEEMVALLQVAMACVATVPDARPDAPDVVRMIEEIGGGHGRTTTEESEEGVRGTSEEERSRGTPPAAPTP |
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| Function | Probable inactive receptor kinase At2g26730 [UniProtKB/Swiss-Prot:O48788] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0023950 | OsGoSa_01g0023950.01 | Chr01 | 25086178 | 25092290 | - | NAM | ||
| CDS seq | atggccggcgtcgtgacgagggcggtggcggcggcggtgctggtggtggtcgtggtcgtggctgctgccgagctcgtggccgcggagccgccgccgagcgagcggtcggcgctgctggcgttcctggcggcgacgccgcacgagcggcgtctcgggtggaactcctcgacgtcggcgtgcgggtgggtcggggtgacgtgcgacgccgggaacgccacggtggtgcaggtgcggctccccggcgtggggctcatcggcgccatcccgccgggcacgctcggccgcctcaccaacctgcaggtgctctccctccgctccaaccgcatcctcggcggcatccccgacgacgtgctccagctcccccagctccgcctcctcttcctccagaacaacctcctctccggcgccatcccgccggcggtcagcaagctcgccgccctcgagaggctcgtcctctccagcaacaacctctcggggcccatccccttcacgctcaacaacctcacctcgctccgcgctctccgcctcgacggcaacaagctctccgggaacatccccagcatcagcatccagagcctcgccgtcttcaacgtctccgacaacaacctcaatggctccatcccggcgtcgctcgcgcgcttcccggccgaggacttcgccggcaacctccagctctgcggctcgccgctcccgccctgcaagtcgttcttcccgtcccCgtccccgtcgcccggggtgagccccgccgacgtccccggggcggcatcctcctcCaagaagcggaggctctccggcgccgcaatcgccggcatcgtcgtgggcgccgtcgtgctggcgctgctcctcctcgtcgccgccgtgctctgcgcggtgtccaagcggcggcgaggcgccagcgagggaccgaagagcacggcggcggcggcgggtgcgggcgccgccgccgcgagaggtgtccccccgccggggtccggcgaggggacgggcatgacgtcgtcGTCcaaggaggacatgggcggcgcgtccgggtcggccgcggcggcggtggcggcggtggcggcggagccgagcaggctggtgttcgtggggaagggggccgggtacagcttcgacctggaggacctgctgcgggcgtcggcggaggtgctcgggaaggggagcgtggggacgtcgtacaaggcggtgctggaggaagggacgacggtggtggtgaagcggctcaaggacgtggcggtggcgcggcgcgagttcgacgcccacatggacgcgctcggcaaggtggagcaccgcaacgtcctccccgtccgcgcctactacttctccaaggacgagaagctcctcgtcttcgactacctccccaacggcagcctctccgccatgctccacgggagccggggGtccggcaagacgccgctggactgggacgcgcggatgcggtcggcgctgtcggcggcgcgcgggctggcgcacctgcacacggtgcacagcctcgtgcacggcaacgtcaagtcctccaacgtcctgctccggccggacgccgacgcggcggcgctctcggacttctgcctccacccgatcttcgcgccgtcgtcggcgcgcccgggcgccggcgggtaccgcgcgccggaggtggtggacacgcggcggccgacgtacaaggcggacgtctactccctcggcgtgctcctcctagagctcctcaccggcaagtcgccgacgcacgcgtccctggaaggggacggcacgctggacctcccacggtgggtgcagtccgtggtgcgggaggagtggacggcggaggtgttcgacgtcgagctggtgcggctcggcgcgagcgcggaggaggagatggtggcgctgctccaggtggccatggcgtgcgtcgccaccgtgcccgacgcgcggcccgacgcccccgacgtggtcaggatgatcgaggagatcggcggcggccacggccggacgacgacggaggagagcgaggagggcgtgcggggaacgtcggaggaggagcggtcgcggggcacgcctccggccgccccgacgccgtga
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| Protein seq | MAGVVTRAVAAAVLVVVVVVAAAELVAAEPPPSERSALLAFLAATPHERRLGWNSSTSACGWVGVTCDAGNATVVQVRLPGVGLIGAIPPGTLGRLTNLQVLSLRSNRILGGIPDDVLQLPQLRLLFLQNNLLSGAIPPAVSKLAALERLVLSSNNLSGPIPFTLNNLTSLRALRLDGNKLSGNIPSISIQSLAVFNVSDNNLNGSIPASLARFPAEDFAGNLQLCGSPLPPCKSFFPSPSPSPGVSPADVPGAASSSKKRRLSGAAIAGIVVGAVVLALLLLVAAVLCAVSKRRRGASEGPKSTAAAAGAGAAAARGVPPPGSGEGTGMTSSSKEDMGGASGSAAAAVAAVAAEPSRLVFVGKGAGYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVAVARREFDAHMDALGKVEHRNVLPVRAYYFSKDEKLLVFDYLPNGSLSAMLHGSRGSGKTPLDWDARMRSALSAARGLAHLHTVHSLVHGNVKSSNVLLRPDADAAALSDFCLHPIFAPSSARPGAGGYRAPEVVDTRRPTYKADVYSLGVLLLELLTGKSPTHASLEGDGTLDLPRWVQSVVREEWTAEVFDVELVRLGASAEEEMVALLQVAMACVATVPDARPDAPDVVRMIEEIGGGHGRTTTEESEEGVRGTSEEERSRGTPPAAPTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 31.988268 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0607900 | RBH | 0.0 | 0.296819 | 2.122998 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g42294 | RBH | 0.0 | 0.181520 | 0.496909 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0607900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024760 | RBH | 0.0 | 3.246714 | 3.444101 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024350 | RBH | 0.124160 | 8.917862 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024680 | RBH | 0.152700 | 11.274240 | 2.637530 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024050 | RBH | 0.051020 | 0.576886 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023770 | RBH | 0.0 | 32.376537 | 4.514822 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0403000 | RBH | 9.7217755 | 8.0070045 | 4.101501 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023460 | RBH | 0.0 | 1.448345 | 0.155649 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0391400 | RBH | 10.376047 | 0.605479 | 15.747345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023710 | RBH | 0.0 | 0.509546 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023700 | RBH | 0.066207 | 10.217670 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028620 | RBH | 1.520648 | 2.705341 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023970 | RBH | 0.0 | 0.853242 | 0.160313 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023840 | RBH | 0.0 | 21.609232 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024070 | RBH | 0.0 | 8.430382 | 2.963899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023800 | RBH | 0.512277 | 9.955051 | 1.513214 |
