Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0023320 | OGI:01073330 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:24550065-24551950 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacacctcttgctgctgctgctgctcatggcgcctcctccgtctttgctcgccaccgcgcttctcctcctgctcctcgccatcgccggcgggccaaatgccgccgccgtcgccgaggccgtcaggtaccagaccctcgtcgccaccccgctctcgccgcacccgtacaccgccaccgccgtggaggatgacggtctgttccaggggagcctcgccgcggacgagggcggcgccgccgcgtcgacggtggggctacgcgtggtccaccgcgacgacttcgcggtgaacgccaccgcggccgagctgctcgcgcaccggttgcggcgggacaagaggagggcgtcgcggatctccgcggccgcggggggtgctgcggcggctaacgggacgcgtgtcggcggcggcggcggcgggagtgggttcgtggcgccggtggtgtccgggctggcgcaggggagcggggagtacttcaccaagatcggggtggggacgcccgtgacgccggcgctcatggtgctggacaccggcagcgacgtcgtgtggctccagtgcgcgccctgccgccggtgctacgaccagtccggccagatgttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccgcaggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgcctacggcgacggctccgtcaccgccggggacttcgccacggagaCcctcaccttcgccagcggggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgcggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccgccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctcctcgtcggccagcgccacctcccggtcctccaccgtcacgttcGgctccggcgccgtggggccctcggccgccgcgtccttcaccccgatggtgaagaaccccaggatggagacgttctactacgtgcagctcatgggcatcagcgtcggcggcgcgcgcgtcccgggcgtggccgtgtccgacctccgcctggacccgtccacaggccgcggcggcgtcatcgtggactccggcacgtccgtcacccgcctggcccggccggcgtacgccgccctgcgcgacgcgttccgcgcggcggccgcgggcctccgcctctccccgggcgggttctccctgttcgacacgtgctacgacctgagcgggctcaaggtggtgaaggtgcccaccgtgtcgatgcacttcgccggcggcgccgaggccgcgctgccgccggagaactacctgatcccggtggactcgaggggcaccttctgcttcgcgttcgccggcaccgacggcggcgtctccatcatcgggaacatccagcagcagggcttccgcgtggtgttcgacggcgacggccagcgcctcggcttcgtgcccaagggatgctagctaattgcgccttaagcctgctgcttaatctaattaacgggggagtgagccttgtttaatcataattaagtacttaattaagggtttggtttgattaaggtggcgagtgagtgagggagggagagagctttggatgctgtaaagcgctgtgtgctttgaggataaggcggttgaaggctgtaaaacagttaaaagtgatgggttataaaaatctccttgaccatgtcagtatgattctatgactgtctctgactggctcgtttgctatagttgtatatatgttgtcccttttcttttcctggtcttttacgacagtataattaacttggccttttctaaaggactttttttcttgct
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| CDS seq | atggcgcctcctccgtctttgctcgccaccgcgcttctcctcctgctcctcgccatcgccggcgggccaaatgccgccgccgtcgccgaggccgtcaggtaccagaccctcgtcgccaccccgctctcgccgcacccgtacaccgccaccgccgtggaggatgacggtctgttccaggggagcctcgccgcggacgagggcggcgccgccgcgtcgacggtggggctacgcgtggtccaccgcgacgacttcgcggtgaacgccaccgcggccgagctgctcgcgcaccggttgcggcgggacaagaggagggcgtcgcggatctccgcggccgcggggggtgctgcggcggctaacgggacgcgtgtcggcggcggcggcggcgggagtgggttcgtggcgccggtggtgtccgggctggcgcaggggagcggggagtacttcaccaagatcggggtggggacgcccgtgacgccggcgctcatggtgctggacaccggcagcgacgtcgtgtggctccagtgcgcgccctgccgccggtgctacgaccagtccggccagatgttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccgcaggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgcctacggcgacggctccgtcaccgccggggacttcgccacggagaCcctcaccttcgccagcggggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgcggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccgccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctcctcgtcggccagcgccacctcccggtcctccaccgtcacgttcGgctccggcgccgtggggccctcggccgccgcgtccttcaccccgatggtgaagaaccccaggatggagacgttctactacgtgcagctcatgggcatcagcgtcggcggcgcgcgcgtcccgggcgtggccgtgtccgacctccgcctggacccgtccacaggccgcggcggcgtcatcgtggactccggcacgtccgtcacccgcctggcccggccggcgtacgccgccctgcgcgacgcgttccgcgcggcggccgcgggcctccgcctctccccgggcgggttctccctgttcgacacgtgctacgacctgagcgggctcaaggtggtgaaggtgcccaccgtgtcgatgcacttcgccggcggcgccgaggccgcgctgccgccggagaactacctgatcccggtggactcgaggggcaccttctgcttcgcgttcgccggcaccgacggcggcgtctccatcatcgggaacatccagcagcagggcttccgcgtggtgttcgacggcgacggccagcgcctcggcttcgtgcccaagggatgctag
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| Protein seq | MAPPPSLLATALLLLLLAIAGGPNAAAVAEAVRYQTLVATPLSPHPYTATAVEDDGLFQGSLAADEGGAAASTVGLRVVHRDDFAVNATAAELLAHRLRRDKRRASRISAAAGGAAAANGTRVGGGGGGSGFVAPVVSGLAQGSGEYFTKIGVGTPVTPALMVLDTGSDVVWLQCAPCRRCYDQSGQMFDPRASHSYGAVDCAAPLCRRLDSGGCDLRRKACLYQVAYGDGSVTAGDFATETLTFASGARVPRVALGCGHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFGRSFSYCLVDRTSSSASATSRSSTVTFGSGAVGPSAAASFTPMVKNPRMETFYYVQLMGISVGGARVPGVAVSDLRLDPSTGRGGVIVDSGTSVTRLARPAYAALRDAFRAAAAGLRLSPGGFSLFDTCYDLSGLKVVKVPTVSMHFAGGAEAALPPENYLIPVDSRGTFCFAFAGTDGGVSIIGNIQQQGFRVVFDGDGQRLGFVPKGC |
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| Function | Aspartyl protease family protein 2 [UniProtKB/Swiss-Prot:Q9LNJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0023320 | OsGoSa_01g0023320.01 | Chr01 | 24550065 | 24551950 | + | NAM | ||
| CDS seq | atggcgcctcctccgtctttgctcgccaccgcgcttctcctcctgctcctcgccatcgccggcgggccaaatgccgccgccgtcgccgaggccgtcaggtaccagaccctcgtcgccaccccgctctcgccgcacccgtacaccgccaccgccgtggaggatgacggtctgttccaggggagcctcgccgcggacgagggcggcgccgccgcgtcgacggtggggctacgcgtggtccaccgcgacgacttcgcggtgaacgccaccgcggccgagctgctcgcgcaccggttgcggcgggacaagaggagggcgtcgcggatctccgcggccgcggggggtgctgcggcggctaacgggacgcgtgtcggcggcggcggcggcgggagtgggttcgtggcgccggtggtgtccgggctggcgcaggggagcggggagtacttcaccaagatcggggtggggacgcccgtgacgccggcgctcatggtgctggacaccggcagcgacgtcgtgtggctccagtgcgcgccctgccgccggtgctacgaccagtccggccagatgttcgacccgcgcgcctcgcactcgtacggcgccgtcgactgcgccgcgccgctctgccgcaggctcgactccggcggctgcgacctgcgccgcaaggcctgcctctaccaggtcgcctacggcgacggctccgtcaccgccggggacttcgccacggagaCcctcaccttcgccagcggggcccgcgtgccgcgcgtcgccctcggctgcggccacgacaacgagggtctcttcgtcgcggcggcggggctcctcgggctcggccgcggcagcctctccttcccctcccagatctcccgccgcttcgggcggagcttctcgtactgcctcgtggaccgcacctcctcgtcggccagcgccacctcccggtcctccaccgtcacgttcGgctccggcgccgtggggccctcggccgccgcgtccttcaccccgatggtgaagaaccccaggatggagacgttctactacgtgcagctcatgggcatcagcgtcggcggcgcgcgcgtcccgggcgtggccgtgtccgacctccgcctggacccgtccacaggccgcggcggcgtcatcgtggactccggcacgtccgtcacccgcctggcccggccggcgtacgccgccctgcgcgacgcgttccgcgcggcggccgcgggcctccgcctctccccgggcgggttctccctgttcgacacgtgctacgacctgagcgggctcaaggtggtgaaggtgcccaccgtgtcgatgcacttcgccggcggcgccgaggccgcgctgccgccggagaactacctgatcccggtggactcgaggggcaccttctgcttcgcgttcgccggcaccgacggcggcgtctccatcatcgggaacatccagcagcagggcttccgcgtggtgttcgacggcgacggccagcgcctcggcttcgtgcccaagggatgctag
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| Protein seq | MAPPPSLLATALLLLLLAIAGGPNAAAVAEAVRYQTLVATPLSPHPYTATAVEDDGLFQGSLAADEGGAAASTVGLRVVHRDDFAVNATAAELLAHRLRRDKRRASRISAAAGGAAAANGTRVGGGGGGSGFVAPVVSGLAQGSGEYFTKIGVGTPVTPALMVLDTGSDVVWLQCAPCRRCYDQSGQMFDPRASHSYGAVDCAAPLCRRLDSGGCDLRRKACLYQVAYGDGSVTAGDFATETLTFASGARVPRVALGCGHDNEGLFVAAAGLLGLGRGSLSFPSQISRRFGRSFSYCLVDRTSSSASATSRSSTVTFGSGAVGPSAAASFTPMVKNPRMETFYYVQLMGISVGGARVPGVAVSDLRLDPSTGRGGVIVDSGTSVTRLARPAYAALRDAFRAAAAGLRLSPGGFSLFDTCYDLSGLKVVKVPTVSMHFAGGAEAALPPENYLIPVDSRGTFCFAFAGTDGGVSIIGNIQQQGFRVVFDGDGQRLGFVPKGC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.249060 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0598600 | RBH | 0.421201 | 0.219243 | 14.118065 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41550 | RBH | 0.171836 | 0.177917 | 2.334113 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0598600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024140 | RBH | 0.100062 | 11.287651 | 6.598487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023700 | RBH | 0.067971 | 1.991492 | 4.795847 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024050 | RBH | 0.223301 | 6.662097 | 6.686400 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023400 | RBH | 0.075664 | 0.359865 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023150 | RBH | 0.555055 | 23.171316 | 13.442299 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0393300 | RBH | 4.4813205 | 13.2744235 | 11.298522 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023070 | RBH | 0.102434 | 0.846803 | 1.565738 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0382500 | RBH | 6.042651 | 2.074069 | 25.93444 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023080 | RBH | 0.0 | 0.128854 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023070 | RBH | 0.0 | 12.803980 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023310 | RBH | 0.243039 | 1.391526 | 0.793001 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023180 | RBH | 0.062601 | 2.897149 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023420 | RBH | 0.165985 | 3.763390 | 1.688328 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023120 | RBH | 0.0 | 13.068747 | 6.355696 |
