Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0020220 | OGI:01064540 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:21395539-21399368 | ||||||||
| Gene Symbol | RPM1, OsRPM1 | ||||||||||
| DNA seq | tgttctccttctctctccccttcgcacctgttcacctctccggcgacgagatggtcccaacctgcagcctgtcctcgatgcctagcgaacaccgccggccgcggagacctcggctccggaggcgggggatcttcctgtgtgcccctccagttccagcgcgggatcgatccggtcgtaggatctggcggctctcgtccacgccctcgtcgccgccggctgctagctacaacgtccacgaatctggccgtacgccctcaaatccaaacgtttgaatccttgattccatcttatcttacgttaatatatgttgaccccggaaattatctcagttctttttatgcatttgttgcaaattacactaaccaactaatctgggcattcttatctagtactccaatagtgccgttcgtctccatctcataccatccaaagttatggtatttttgaaagggtggaaaaatctgtgctatttttggttcaggtgaaaaagggtctccatctttttaaccaccttaagcacttagcgttgaaggtgccctaacaacgtgtcggtgggatgttagtgcgccagtgggatgctagttggcgacagacgctccgttagctggcgacctgccgttctgttctgtagtgccaacttgttctttttttttggttcaaTttttagatataataagacttctacatagagtaagtgcacatgcaaaacgagacaaattattagcatatgattgaattttaattatttaaaacttaaaaatagatttatttgattttttataacaacttctatgaagaaatttttcgtacgaaacacaccgtttagccgttttgaaaaacatgctaacagaaaccgagaaacatttatgccattggagtttagaacggagcctaatactgatactaaattgccatgctgtcggaaagtaggtgtagctggttagctttttaaataatgtgcgtctccaatctcaatctcaattccttccgcacatggcctccaccaaaacaatctacaataaataaagaaggcaaactcacctgcagatatccacttctactctgtggagatctgaatcaagcacactgcacactgcacacacacagaaaccatggcggagggcgttgtaggatcgctgatcggcaagcttggtgcggccttggcgaaagaggcagcaacctacggcgcatcgctgctctgccaggaagtctctgctctcaagcgtctctttgcccagatccgggacgtcaaggacgagctggagagcatggaggcctacctccatggagctgagcggttcaaggacatcgacgagactactggaaactatgtcaagaagatccgagggctggctttcgagatcgaggatgctgttgacgagttcacctacaagctggaggacaagcatGggggattcactgccaagatgaagAaaaggatcaagcatgtcaaggcatggcgtcgtctcgcactcaagctgcaagacatcaagcaaaggcttaaaaatgccgacgagaggaagatccgttatgatctgagtgggattgaaaagaatggtcactctaaatcccctgaacaatcttttcagtttgcgagggaagaggatcttgtGgggattgagataaataaggagttgctgatgcagtggcttgtgggtgattcggaacaagggtgtaaaattgcaacagtttgggggatgggaggtgtgggaaagaccactttggtttcccaggtgtacaagactgtgaaattggattttgatgtttctggattcgtgactgtcacaaacagctaccagtttgatgatctattgaagaagatctccacagagttcgaaattccaatcgacgctgataacattgcagtgggaagcctagttgagagcattcatcaccatctgcaaggtaaaaggtacattttggttcttgacgatgtttggcaaccggatgtttggtttaagctaaggaatgcgtttcctactgaaagcactggtcggtttattttcactactagaatgcaggaagtagcattgctagcaactaaaaaatgtacaattgagttagcaccgttagatgcacattgttcatggcagttgttctgcaaagaagcattttggaacgctgacaacaaaacatgccctgaggaactacaagatatagcttcgatgtttgtagataagtgtgctggcttgcccattgccattgcatgcataggccgcttattatcctgcaaacacccgatatactctgaatgggaacatgtgtacaaggacttagagcttcagctcaccaacaatgtgatccttgatgttgatattgttctgaaagtcagcttggaggatcttcaacgtaatttgaagaactgttttttgcactgcacaatatttccagaaagttAtgcattcaacagaaaaagattaatcagacattggatagcagctggatacattcaagaggtaggtagcaaaacagtagaggaagtggcagagggctacttaaatgaacttgtaaacagaagcctgttacaggtagttgagcgcaatctatctggtcgagttcgcaggtgccgaatgcatgacataatccgtttacttgccctcagaaaatcgaaggaggaatttttttgtcaagtttacaagggctctgaggcatgttcaatcgagaatacacgtcgtttatcaatccaaaatgtaagtattcaacacctttctggatcaagtgcaccatgtctccgatcCCTccatgttttcagtatttatcggagaattgattcgctggaggctttcctcaaatcattcaagtttctgtcaacgttggatcttcaaggtatttcaatcaagaggctacctaagattgtttttgacttgtttaatctacggttcttgggtcttcgcaaaacatatatcgagtatctcccaaaagaactgagtaggttacagaatttggaagtcctggatgcttatgattctaagctattgattcttccagtggaagtggccacactttggaaactgaaatatctatatgtggtaagagttccagagggatcttatgatagagttcttgcttttgacggcctccaagtgcctatgggtatctgtaatttgattgacttgctggccctgcaacttatcgaagctagcactgaggttctgcgtcatattggatgtttaaccaagttaagaacctttgcaatcggtaaagttagaaatgaacactgtgcagatttgtgcgacgcaatcatgagaatgacttgtcttgttcatattacaatcatttcagctgatgagaaagaagtgctacagttagaaacactttgtttaccttctactattgcaaagattgatctaGggggcaggctaagcaaggaatccatgtcacagttgatctcaaccagttcaaacctcgttaaccttactgaattaaacttgtgcttctccaaactcaatgaagactcttttgcttgcatcttgaatttacacaacttagttgagctttatctttcaaaggcttatgacggaaaggaactaatcttccatgcaacatcatttccgaaactcaaattactagcagtatgggatgctccttatctcagaaaagttgcaatccaacaaggtgcgctacaaagtcttgttaggctatggctagctgattgtccagaattaagggatgttcctgatggcatcgagcatctgagaacccttgagcatctgagaattaagggaagttcagatgagctctggaggaagcttgagataaaaggaaaatcgaacaaacgcaatgaagatagaatgaagatcagccatgtcaaatgggtcgaaattgtttag
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| CDS seq | atggcggagggcgttgtaggatcgctgatcggcaagcttggtgcggccttggcgaaagaggcagcaacctacggcgcatcgctgctctgccaggaagtctctgctctcaagcgtctctttgcccagatccgggacgtcaaggacgagctggagagcatggaggcctacctccatggagctgagcggttcaaggacatcgacgagactactggaaactatgtcaagaagatccgagggctggctttcgagatcgaggatgctgttgacgagttcacctacaagctggaggacaagcatGggggattcactgccaagatgaagAaaaggatcaagcatgtcaaggcatggcgtcgtctcgcactcaagctgcaagacatcaagcaaaggcttaaaaatgccgacgagaggaagatccgttatgatctgagtgggattgaaaagaatggtcactctaaatcccctgaacaatcttttcagtttgcgagggaagaggatcttgtGgggattgagataaataaggagttgctgatgcagtggcttgtgggtgattcggaacaagggtgtaaaattgcaacagtttgggggatgggaggtgtgggaaagaccactttggtttcccaggtgtacaagactgtgaaattggattttgatgtttctggattcgtgactgtcacaaacagctaccagtttgatgatctattgaagaagatctccacagagttcgaaattccaatcgacgctgataacattgcagtgggaagcctagttgagagcattcatcaccatctgcaaggtaaaaggtacattttggttcttgacgatgtttggcaaccggatgtttggtttaagctaaggaatgcgtttcctactgaaagcactggtcggtttattttcactactagaatgcaggaagtagcattgctagcaactaaaaaatgtacaattgagttagcaccgttagatgcacattgttcatggcagttgttctgcaaagaagcattttggaacgctgacaacaaaacatgccctgaggaactacaagatatagcttcgatgtttgtagataagtgtgctggcttgcccattgccattgcatgcataggccgcttattatcctgcaaacacccgatatactctgaatgggaacatgtgtacaaggacttagagcttcagctcaccaacaatgtgatccttgatgttgatattgttctgaaagtcagcttggaggatcttcaacgtaatttgaagaactgttttttgcactgcacaatatttccagaaagttAtgcattcaacagaaaaagattaatcagacattggatagcagctggatacattcaagaggtaggtagcaaaacagtagaggaagtggcagagggctacttaaatgaacttgtaaacagaagcctgttacaggtagttgagcgcaatctatctggtcgagttcgcaggtgccgaatgcatgacataatccgtttacttgccctcagaaaatcgaaggaggaatttttttgtcaagtttacaagggctctgaggcatgttcaatcgagaatacacgtcgtttatcaatccaaaatgtaagtattcaacacctttctggatcaagtgcaccatgtctccgatcCCTccatgttttcagtatttatcggagaattgattcgctggaggctttcctcaaatcattcaagtttctgtcaacgttggatcttcaaggtatttcaatcaagaggctacctaagattgtttttgacttgtttaatctacggttcttgggtcttcgcaaaacatatatcgagtatctcccaaaagaactgagtaggttacagaatttggaagtcctggatgcttatgattctaagctattgattcttccagtggaagtggccacactttggaaactgaaatatctatatgtggtaagagttccagagggatcttatgatagagttcttgcttttgacggcctccaagtgcctatgggtatctgtaatttgattgacttgctggccctgcaacttatcgaagctagcactgaggttctgcgtcatattggatgtttaaccaagttaagaacctttgcaatcggtaaagttagaaatgaacactgtgcagatttgtgcgacgcaatcatgagaatgacttgtcttgttcatattacaatcatttcagctgatgagaaagaagtgctacagttagaaacactttgtttaccttctactattgcaaagattgatctaGggggcaggctaagcaaggaatccatgtcacagttgatctcaaccagttcaaacctcgttaaccttactgaattaaacttgtgcttctccaaactcaatgaagactcttttgcttgcatcttgaatttacacaacttagttgagctttatctttcaaaggcttatgacggaaaggaactaatcttccatgcaacatcatttccgaaactcaaattactagcagtatgggatgctccttatctcagaaaagttgcaatccaacaaggtgcgctacaaagtcttgttaggctatggctagctgattgtccagaattaagggatgttcctgatggcatcgagcatctgagaacccttgagcatctgagaattaagggaagttcagatgagctctggaggaagcttgagataaaaggaaaatcgaacaaacgcaatgaagatagaatgaagatcagccatgtcaaatgggtcgaaattgtttag
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| Protein seq | MAEGVVGSLIGKLGAALAKEAATYGASLLCQEVSALKRLFAQIRDVKDELESMEAYLHGAERFKDIDETTGNYVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAWRRLALKLQDIKQRLKNADERKIRYDLSGIEKNGHSKSPEQSFQFAREEDLVGIEINKELLMQWLVGDSEQGCKIATVWGMGGVGKTTLVSQVYKTVKLDFDVSGFVTVTNSYQFDDLLKKISTEFEIPIDADNIAVGSLVESIHHHLQGKRYILVLDDVWQPDVWFKLRNAFPTESTGRFIFTTRMQEVALLATKKCTIELAPLDAHCSWQLFCKEAFWNADNKTCPEELQDIASMFVDKCAGLPIAIACIGRLLSCKHPIYSEWEHVYKDLELQLTNNVILDVDIVLKVSLEDLQRNLKNCFLHCTIFPESYAFNRKRLIRHWIAAGYIQEVGSKTVEEVAEGYLNELVNRSLLQVVERNLSGRVRRCRMHDIIRLLALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLRSLHVFSIYRRIDSLEAFLKSFKFLSTLDLQGISIKRLPKIVFDLFNLRFLGLRKTYIEYLPKELSRLQNLEVLDAYDSKLLILPVEVATLWKLKYLYVVRVPEGSYDRVLAFDGLQVPMGICNLIDLLALQLIEASTEVLRHIGCLTKLRTFAIGKVRNEHCADLCDAIMRMTCLVHITIISADEKEVLQLETLCLPSTIAKIDLGGRLSKESMSQLISTSSNLVNLTELNLCFSKLNEDSFACILNLHNLVELYLSKAYDGKELIFHATSFPKLKLLAVWDAPYLRKVAIQQGALQSLVRLWLADCPELRDVPDGIEHLRTLEHLRIKGSSDELWRKLEIKGKSNKRNEDRMKISHVKWVEIV |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0020220 | OsGoSa_01g0020220.01 | Chr01 | 21395539 | 21399368 | + | NAM | ||
| CDS seq | atggcggagggcgttgtaggatcgctgatcggcaagcttggtgcggccttggcgaaagaggcagcaacctacggcgcatcgctgctctgccaggaagtctctgctctcaagcgtctctttgcccagatccgggacgtcaaggacgagctggagagcatggaggcctacctccatggagctgagcggttcaaggacatcgacgagactactggaaactatgtcaagaagatccgagggctggctttcgagatcgaggatgctgttgacgagttcacctacaagctggaggacaagcatGggggattcactgccaagatgaagAaaaggatcaagcatgtcaaggcatggcgtcgtctcgcactcaagctgcaagacatcaagcaaaggcttaaaaatgccgacgagaggaagatccgttatgatctgagtgggattgaaaagaatggtcactctaaatcccctgaacaatcttttcagtttgcgagggaagaggatcttgtGgggattgagataaataaggagttgctgatgcagtggcttgtgggtgattcggaacaagggtgtaaaattgcaacagtttgggggatgggaggtgtgggaaagaccactttggtttcccaggtgtacaagactgtgaaattggattttgatgtttctggattcgtgactgtcacaaacagctaccagtttgatgatctattgaagaagatctccacagagttcgaaattccaatcgacgctgataacattgcagtgggaagcctagttgagagcattcatcaccatctgcaaggtaaaaggtacattttggttcttgacgatgtttggcaaccggatgtttggtttaagctaaggaatgcgtttcctactgaaagcactggtcggtttattttcactactagaatgcaggaagtagcattgctagcaactaaaaaatgtacaattgagttagcaccgttagatgcacattgttcatggcagttgttctgcaaagaagcattttggaacgctgacaacaaaacatgccctgaggaactacaagatatagcttcgatgtttgtagataagtgtgctggcttgcccattgccattgcatgcataggccgcttattatcctgcaaacacccgatatactctgaatgggaacatgtgtacaaggacttagagcttcagctcaccaacaatgtgatccttgatgttgatattgttctgaaagtcagcttggaggatcttcaacgtaatttgaagaactgttttttgcactgcacaatatttccagaaagttAtgcattcaacagaaaaagattaatcagacattggatagcagctggatacattcaagaggtaggtagcaaaacagtagaggaagtggcagagggctacttaaatgaacttgtaaacagaagcctgttacaggtagttgagcgcaatctatctggtcgagttcgcaggtgccgaatgcatgacataatccgtttacttgccctcagaaaatcgaaggaggaatttttttgtcaagtttacaagggctctgaggcatgttcaatcgagaatacacgtcgtttatcaatccaaaatgtaagtattcaacacctttctggatcaagtgcaccatgtctccgatcCCTccatgttttcagtatttatcggagaattgattcgctggaggctttcctcaaatcattcaagtttctgtcaacgttggatcttcaaggtatttcaatcaagaggctacctaagattgtttttgacttgtttaatctacggttcttgggtcttcgcaaaacatatatcgagtatctcccaaaagaactgagtaggttacagaatttggaagtcctggatgcttatgattctaagctattgattcttccagtggaagtggccacactttggaaactgaaatatctatatgtggtaagagttccagagggatcttatgatagagttcttgcttttgacggcctccaagtgcctatgggtatctgtaatttgattgacttgctggccctgcaacttatcgaagctagcactgaggttctgcgtcatattggatgtttaaccaagttaagaacctttgcaatcggtaaagttagaaatgaacactgtgcagatttgtgcgacgcaatcatgagaatgacttgtcttgttcatattacaatcatttcagctgatgagaaagaagtgctacagttagaaacactttgtttaccttctactattgcaaagattgatctaGggggcaggctaagcaaggaatccatgtcacagttgatctcaaccagttcaaacctcgttaaccttactgaattaaacttgtgcttctccaaactcaatgaagactcttttgcttgcatcttgaatttacacaacttagttgagctttatctttcaaaggcttatgacggaaaggaactaatcttccatgcaacatcatttccgaaactcaaattactagcagtatgggatgctccttatctcagaaaagttgcaatccaacaaggtgcgctacaaagtcttgttaggctatggctagctgattgtccagaattaagggatgttcctgatggcatcgagcatctgagaacccttgagcatctgagaattaagggaagttcagatgagctctggaggaagcttgagataaaaggaaaatcgaacaaacgcaatgaagatagaatgaagatcagccatgtcaaatgggtcgaaattgtttag
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| Protein seq | MAEGVVGSLIGKLGAALAKEAATYGASLLCQEVSALKRLFAQIRDVKDELESMEAYLHGAERFKDIDETTGNYVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAWRRLALKLQDIKQRLKNADERKIRYDLSGIEKNGHSKSPEQSFQFAREEDLVGIEINKELLMQWLVGDSEQGCKIATVWGMGGVGKTTLVSQVYKTVKLDFDVSGFVTVTNSYQFDDLLKKISTEFEIPIDADNIAVGSLVESIHHHLQGKRYILVLDDVWQPDVWFKLRNAFPTESTGRFIFTTRMQEVALLATKKCTIELAPLDAHCSWQLFCKEAFWNADNKTCPEELQDIASMFVDKCAGLPIAIACIGRLLSCKHPIYSEWEHVYKDLELQLTNNVILDVDIVLKVSLEDLQRNLKNCFLHCTIFPESYAFNRKRLIRHWIAAGYIQEVGSKTVEEVAEGYLNELVNRSLLQVVERNLSGRVRRCRMHDIIRLLALRKSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLRSLHVFSIYRRIDSLEAFLKSFKFLSTLDLQGISIKRLPKIVFDLFNLRFLGLRKTYIEYLPKELSRLQNLEVLDAYDSKLLILPVEVATLWKLKYLYVVRVPEGSYDRVLAFDGLQVPMGICNLIDLLALQLIEASTEVLRHIGCLTKLRTFAIGKVRNEHCADLCDAIMRMTCLVHITIISADEKEVLQLETLCLPSTIAKIDLGGRLSKESMSQLISTSSNLVNLTELNLCFSKLNEDSFACILNLHNLVELYLSKAYDGKELIFHATSFPKLKLLAVWDAPYLRKVAIQQGALQSLVRLWLADCPELRDVPDGIEHLRTLEHLRIKGSSDELWRKLEIKGKSNKRNEDRMKISHVKWVEIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.555453 | 9.380692 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0547000 | RBH | 0.595618 | 0.774348 | 3.689915 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36640 | RBH | 0.402625 | 0.520603 | 0.949470 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0547000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020890 | RBH | 0.329661 | 3.835406 | 7.450635 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020500 | RBH | 0.378215 | 3.016635 | 2.392804 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020830 | RBH | 0.555691 | 9.497241 | 8.178088 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020220 | RBH | 0.025821 | 0.080282 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020110 | RBH | 3.954554 | 23.221912 | 8.897040 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0345400 | RBH | 4.8013495 | 20.7936735 | 5.5016535 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020060 | RBH | 0.061965 | 0.303021 | 1.049605 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0341400 | RBH | 3.3851845 | 4.542754 | 8.4614205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020070 | RBH | 0.080964 | 0.472496 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019970 | RBH | 0.240673 | 9.371881 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0020130 | RBH | 0.364114 | 0.929847 | 0.861801 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020020 | RBH | 0.095477 | 8.330212 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021130 | RBH | 0.201692 | 4.533354 | 5.255656 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020850 | RBH | 0.156482 | 11.772487 | 9.168175 |
