Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0019990 | OGI:01063920 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:21129283-21133824 | ||||||||
| Gene Symbol | prx17 | ||||||||||
| DNA seq | acccatcatcactactgcaccaagctagtctcaagtgttcaattagctagctctcttttgcttagccatgagtgcagcaatggctgcctttgccttcctactagtcatcgccatcgtcttccccctcgcatccgcattcccttcccctcctgtttcatggggccaacagcagctagaccctcacttctacgaccactcgtgcccacaagcacagcaaatcgtggcatctatcgtcgggaaagcgcattaccaggaCccccgcatggccgcatccctcctccgtctccacttccacgactgctttgtcaaggtacatagttacatatgggatttttttttctctaaagagcgaaaaaaagacctgtatctcttcccattttatatggaggagttcattaattgtacaatacaatggctcgatgagtgaattacaaaaaataatgcatttgcagggctgcgacgcgtcgatcctactagacagcagtgcgacgatcatgagcgagaagcggtcgaaccctaaccgggactctgcgagggggttcgaggtgatcgacgaaatcaaggcggcgttggaggccgcttgcccacacaccgtctcttgcgctgacatccttgccctcgccgcgcgtgactccaccgtcatggtatatatacattttctagacctccctattacattttcttttcatattcgaatagttaggttaattgcttttatgaatgtagtgcatatgttgagaatatatgcttttgcattatctaaaaagctagccgcggatttggattgactgcaacttgtTGtgtgtacgtataatatgcatcatgtcggacttggtcagccagtaagctaagctaggtctgtacacgcactgaaggacatattcattcttgtttccacactttacttatgtacagattatgtgtaagcttttcaaaagatggtttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacccataatgtttttcctaacaaatctctatggttgggaacacatggcataaaagtatagtatctcgatctcctgtgtcgagctatttggatgggcccagcagtgcactatagctacaacatatagttccagacccagtctagagctagctaggacaaagtagaacacatcaccattattcaccAaaagcagctacttagctatctccatgtgttgttgtgtagaaggaaaaggataaagctagcaatgcaaagtcgacacaaagtagggtcacattgctcggtaaagcatatgcagcgccaaagctatctacagttcctctctccctcacaaaacaaaacgaaagctatctacagttacaaaataacaaagcattggccattgcgcgtcatggttaaaggcgtagtaaattaaaagtgacaaagtacatgtaccacctgggtttttatttatttttgactgaaacgtcgttagctaaagcttgggtttatttaagagagttagttatattaacatgtgcatcatcaattaattggtgtgtgcgtgcgtcatattgttgtggacgatataattaacaataatcctcgatcaaggtttcctttcgataagcttgagttcatgttaattgttcttttctatgtgcttaattatgaagaaatcttaaaaaggttgattttgaggaccacataaACatattggaattttctaccaaatcaagcccctcagtacaagaactgtactgaatggcattaggcttaaacaagcaaatataatatttctcaatcctttcaagaagaacagtaaaacaaaatcttaggattatctttttgatggaagtattatAaaattctggggatgctcataggataggatgtacgcatatgatcatagtggcgagtgtgtgtatacacgcgtgtatacgagagcatcatctcatttgttctgcgtttcagagAaagaattattttgggccggtttaattaattgtctaggctcatgcagaacattcgatcagtagtcaactagtcattggttctggatctaccaatcttttttgtcatgacaataccgaaatgaaaaccttagcttaattgcttgcattgctcgtacgtgcagacgggaggccccgggtggatagtgccgctggggaggagggactcgcgtggggcgagcgtgcagggctccaacaacgacatcccggctcccaacaacaccctccccaccatcatcaccaagttcaagctccagggcctcgacatcgtcgacctcgtcgccctcctcggtatttatattatgtcgcatatgatttataatctatcctttatatatattgttacgacttaacctatttgtcagtgactgttgttatatagcgctagtgactatatagcttgtcggtgactatttgcagtaactttcacatgcttatttaggtttagagcacttaactaggtagcctctttttttttatctccatctctctagctaggacctactctgtaaaaaaaaatcaacctagtattgaatgagacattttctaatataacgaatctgaacaagcttctgtccagattcgttatataagaaaaacgtccgatccaatcttagaatggtttgttgtaggatagagggagtaggaaggggaaactattctaatccctcgaggggatgttccctcctttgctcaaaaaccatataaatggttataaaaaattctggaaaaatttaacaatattcatacaacacatatatacaacttcacaaaatcttaagtccaaactcaactcacacgtcgagatataaaaaagacaaattcagcatatgaatagtagcgtactgtttatatctaaatttgtcTtttttgtttctcgatgtgtagatcgaatttgaacatgaattttggtggactagtaggtatcattatactctacattgtcaatttttttcagattttttcacaactatttgcatcgaatttagaagaaaaagatatacgaGgggatattccctcgagggattagaatccactcccaggagaaagctaggtagctagagttggtggcttagctcgacgatgcatggtacttgtaggacgcaacatgcatggcttctgacgtgtccaaggacaccgtagatccatgcaactcattggtacctctcacaactgtagcttgtgtcacatgttgcacccaaatacataaccaccgttgaaattctcaggagctagctagagagcagcagtacctggatcctcagatgtcgtatccagacatatcaccgacacatttcaagacctaaacacctactatctgtctaaacagacaaaagcgtaggctggtgccacaaatcaatcatttcccaaccaacatcgcgacacaagtgctaaaactttatgtatatgaaaagagtttgttttagtccagcaaaaattttttctttgaggtgccagtatctcacgataccagattgttggatccaataatgcccatcctagctagctagatccaacaatcgaaaacaatttggtaccgtgagatattagtatctcgagatacttttagctagaccggaacaaatctcatatgaaaaatatccaaaatgatatccatccatcccattcactgatcgacagaattattctgcacatatAtttcggctgaattatttacagtaaataactgaattagacttgatgtcgtgtgtcaaaaaaattgttgtaattatctgcatatttgactgacaggtagccacaccatcggcgactCccggtgcacgagcttccggcagcggctgtacaaccagacggggaacggcctgccggacttcacgctggacgcgtcgtacgcggcggcgctgcggccgcggtgcccgcgctccggcggcgaccagaacctcttcttcctcgaccccgtcacccccttcaggttcgacaaccagtactacaagaacctgctcgcccaccgcggcctcctcagctccgacgaggtgctcctcaccggcggcaacccggccacggcggagctcgtcgagctctacgccgccgatcaggacatcttcttcgcccacttcgcgcggtccatggtcaagatgggcaacatctcgccgctcaccggcggcaacggcgaggtcaggaccaactgcaggagggtcaaccacaactactgatagatcgatcgatacccatcatcgtctatcattcgtcgtcgatctgctgcttttggttaataattaatttggtctagatggttcatcttttggtcggttatattattattagttgtcgattaagtaaaacactgttttgtcgatcgagatgtgagatttgttggttgtgtttaattgtgttaTtttgtttcttgaattgtttgttagcctcttagaggAaatttgatacgcttggtgtatcatgcatgctgttattagttggttcttgttaataaaatgagtcatgtttgtggctgatctcaaccctcaagtcctgattttttttaagtacattgtgagtatttgttaaataaaacgaaatttttgaagtacta
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| CDS seq | atgagtgcagcaatggctgcctttgccttcctactagtcatcgccatcgtcttccccctcgcatccgcattcccttcccctcctgtttcatggggccaacagcagctagaccctcacttctacgaccactcgtgcccacaagcacagcaaatcgtggcatctatcgtcgggaaagcgcattaccaggaCccccgcatggccgcatccctcctccgtctccacttccacgactgctttgtcaagggctgcgacgcgtcgatcctactagacagcagtgcgacgatcatgagcgagaagcggtcgaaccctaaccgggactctgcgagggggttcgaggtgatcgacgaaatcaaggcggcgttggaggccgcttgcccacacaccgtctcttgcgctgacatccttgccctcgccgcgcgtgactccaccgtcatgacgggaggccccgggtggatagtgccgctggggaggagggactcgcgtggggcgagcgtgcagggctccaacaacgacatcccggctcccaacaacaccctccccaccatcatcaccaagttcaagctccagggcctcgacatcgtcgacctcgtcgccctcctcggtagccacaccatcggcgactCccggtgcacgagcttccggcagcggctgtacaaccagacggggaacggcctgccggacttcacgctggacgcgtcgtacgcggcggcgctgcggccgcggtgcccgcgctccggcggcgaccagaacctcttcttcctcgaccccgtcacccccttcaggttcgacaaccagtactacaagaacctgctcgcccaccgcggcctcctcagctccgacgaggtgctcctcaccggcggcaacccggccacggcggagctcgtcgagctctacgccgccgatcaggacatcttcttcgcccacttcgcgcggtccatggtcaagatgggcaacatctcgccgctcaccggcggcaacggcgaggtcaggaccaactgcaggagggtcaaccacaactactga
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| Protein seq | MSAAMAAFAFLLVIAIVFPLASAFPSPPVSWGQQQLDPHFYDHSCPQAQQIVASIVGKAHYQDPRMAASLLRLHFHDCFVKGCDASILLDSSATIMSEKRSNPNRDSARGFEVIDEIKAALEAACPHTVSCADILALAARDSTVMTGGPGWIVPLGRRDSRGASVQGSNNDIPAPNNTLPTIITKFKLQGLDIVDLVALLGSHTIGDSRCTSFRQRLYNQTGNGLPDFTLDASYAAALRPRCPRSGGDQNLFFLDPVTPFRFDNQYYKNLLAHRGLLSSDEVLLTGGNPATAELVELYAADQDIFFAHFARSMVKMGNISPLTGGNGEVRTNCRRVNHNY |
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| Function | Peroxidase 72 [UniProtKB/Swiss-Prot:Q9FJZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0019990 | OsGoSa_01g0019990.01 | Chr01 | 21129283 | 21133824 | + | NAM | ||
| CDS seq | atgagtgcagcaatggctgcctttgccttcctactagtcatcgccatcgtcttccccctcgcatccgcattcccttcccctcctgtttcatggggccaacagcagctagaccctcacttctacgaccactcgtgcccacaagcacagcaaatcgtggcatctatcgtcgggaaagcgcattaccaggaCccccgcatggccgcatccctcctccgtctccacttccacgactgctttgtcaagggctgcgacgcgtcgatcctactagacagcagtgcgacgatcatgagcgagaagcggtcgaaccctaaccgggactctgcgagggggttcgaggtgatcgacgaaatcaaggcggcgttggaggccgcttgcccacacaccgtctcttgcgctgacatccttgccctcgccgcgcgtgactccaccgtcatgacgggaggccccgggtggatagtgccgctggggaggagggactcgcgtggggcgagcgtgcagggctccaacaacgacatcccggctcccaacaacaccctccccaccatcatcaccaagttcaagctccagggcctcgacatcgtcgacctcgtcgccctcctcggtagccacaccatcggcgactCccggtgcacgagcttccggcagcggctgtacaaccagacggggaacggcctgccggacttcacgctggacgcgtcgtacgcggcggcgctgcggccgcggtgcccgcgctccggcggcgaccagaacctcttcttcctcgaccccgtcacccccttcaggttcgacaaccagtactacaagaacctgctcgcccaccgcggcctcctcagctccgacgaggtgctcctcaccggcggcaacccggccacggcggagctcgtcgagctctacgccgccgatcaggacatcttcttcgcccacttcgcgcggtccatggtcaagatgggcaacatctcgccgctcaccggcggcaacggcgaggtcaggaccaactgcaggagggtcaaccacaactactga
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| Protein seq | MSAAMAAFAFLLVIAIVFPLASAFPSPPVSWGQQQLDPHFYDHSCPQAQQIVASIVGKAHYQDPRMAASLLRLHFHDCFVKGCDASILLDSSATIMSEKRSNPNRDSARGFEVIDEIKAALEAACPHTVSCADILALAARDSTVMTGGPGWIVPLGRRDSRGASVQGSNNDIPAPNNTLPTIITKFKLQGLDIVDLVALLGSHTIGDSRCTSFRQRLYNQTGNGLPDFTLDASYAAALRPRCPRSGGDQNLFFLDPVTPFRFDNQYYKNLLAHRGLLSSDEVLLTGGNPATAELVELYAADQDIFFAHFARSMVKMGNISPLTGGNGEVRTNCRRVNHNY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.609105 | 25.806664 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0543100 | RBH | 0.0 | 0.0 | 1.337187 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36240 | RBH | 0.0 | 0.0 | 0.326608 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0543100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020660 | RBH | 0.0 | 13.663387 | 18.861666 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020270 | RBH | 0.0 | 4.378214 | 0.435127 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020600 | RBH | 0.0 | 33.830608 | 14.972256 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019990 | RBH | 0.0 | 0.301785 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019880 | RBH | 0.000000 | 26.007874 | 8.567736 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0341600 | RBH | 1.6041865 | 31.7152645 | 1.6174355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019790 | RBH | 0.0 | 2.055031 | 0.303693 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0334800 | RBH | 1.58206 | 2.25711 | 14.5572515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019840 | RBH | 0.0 | 0.497438 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019740 | RBH | 0.0 | 15.166962 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019890 | RBH | 0.0 | 4.180838 | 0.472262 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019790 | RBH | 0.0 | 19.523779 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021370 | RBH | 0.0 | 3.768452 | 8.831897 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021100 | RBH | 0.0 | 20.977650 | 1.540686 |
