Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_01g0017520 | OGI:11012980 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr01:16653849-16655405 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccgccggcgatgaccgcctgtctgacctccccgacgacctcctcctccgcatcctccacttcgcgaacgccaaggaggccgcgtccaccagcttgctctcgcggcggttcggcgcgctctggcgctcctccggcgccgtcaacctcgccgcgagcgtcccctgcggcagcagatacatcaggagcgcggccctgctcgcccgtcgcggcgccttcgttcgtgcggccgaggcggcgctctccgccgccgccgccgccgccgaccaccgcgtcacgaggctcaccgtccacgtcgagtgcgacaaggaggacaaaggctcgatcgccagcttcctcctcagcagcgagaacgacgagcgccgcagccaccgcgacgtgttcgacgccgtcctctcccacccggcggcgcgccgcgtcgaggagctcagcgtcgccgccgtccaccctcactggggcgacaagggcaacatcgtgagcagcgacggcgctgggatctacagcatcaatcccgccacccttccgtcgaacaccctccgcgttctggacctcaccaactgccgcagcctcacgccgtcgccggccgccgccgccgccgccgccgcagccgccgcgttcccgcggctggagacgctgcggctgcgacactgcacggcgaacatcgacgatctccaccgtatcatcgacgccgcgccggagctcgccgccgtgcgcctcgagttcgtccatctcatgtccaacatccacgatgtccccttcctggtgcagctggcaatggcctcaaccacccgcctccgcttcccggcggccaccgcgctcacgctgatcaactgcctcaccaacggcggcatgagcggcagcgttatcgacgcgccgaggctacgatccttgacatacaagggggcggcgaggtcgcagttcgagctaacctcgccggcgccggacatgaagatggtgcacctccatttcaaccactacttccatcaacgtgattaccttcgtttcatccataacttcaccaaggtcaaggtgctcaagctaaaggcggagaatgtcgacgacatggctgtccatggcgtattcttccccaacattgctcgcctcgagctcgacggaggtttcaaccgttggagtaagacggcgaaggccgccgccgcgatcgcgagcatgctccattgctgcccagtgctctgcgacctcaacctgaatctcatcagcacggtgtcacctgactatttcaagaaatcgaagcaagttcagcatttctttcaaagaaaatcccagcttgatttcgacaggtcgatcgatgatgtcatgcgaaacagcatatcaaagcgtggtgatcatcgccataacggcgatgaggtttctggattcatccctggattgactgcctgctccttcacctgcttgcagaacaatctgagAagagttaacctgcaattcaggttggatgagaattctgagaattttggagttcgtctggtaaaattcttcgctgaaaacgcaatggttctcgaagaattgcgcgtattgacagtggaaactgaaacctga
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| CDS seq | atggccgccggcgatgaccgcctgtctgacctccccgacgacctcctcctccgcatcctccacttcgcgaacgccaaggaggccgcgtccaccagcttgctctcgcggcggttcggcgcgctctggcgctcctccggcgccgtcaacctcgccgcgagcgtcccctgcggcagcagatacatcaggagcgcggccctgctcgcccgtcgcggcgccttcgttcgtgcggccgaggcggcgctctccgccgccgccgccgccgccgaccaccgcgtcacgaggctcaccgtccacgtcgagtgcgacaaggaggacaaaggctcgatcgccagcttcctcctcagcagcgagaacgacgagcgccgcagccaccgcgacgtgttcgacgccgtcctctcccacccggcggcgcgccgcgtcgaggagctcagcgtcgccgccgtccaccctcactggggcgacaagggcaacatcgtgagcagcgacggcgctgggatctacagcatcaatcccgccacccttccgtcgaacaccctccgcgttctggacctcaccaactgccgcagcctcacgccgtcgccggccgccgccgccgccgccgccgcagccgccgcgttcccgcggctggagacgctgcggctgcgacactgcacggcgaacatcgacgatctccaccgtatcatcgacgccgcgccggagctcgccgccgtgcgcctcgagttcgtccatctcatgtccaacatccacgatgtccccttcctggtgcagctggcaatggcctcaaccacccgcctccgcttcccggcggccaccgcgctcacgctgatcaactgcctcaccaacggcggcatgagcggcagcgttatcgacgcgccgaggctacgatccttgacatacaagggggcggcgaggtcgcagttcgagctaacctcgccggcgccggacatgaagatggtgcacctccatttcaaccactacttccatcaacgtgattaccttcgtttcatccataacttcaccaaggtcaaggtgctcaagctaaaggcggagaatgtcgacgacatggctgtccatggcgtattcttccccaacattgctcgcctcgagctcgacggaggtttcaaccgttggagtaagacggcgaaggccgccgccgcgatcgcgagcatgctccattgctgcccagtgctctgcgacctcaacctgaatctcatcagcacggtgtcacctgactatttcaagaaatcgaagcaagttcagcatttctttcaaagaaaatcccagcttgatttcgacaggtcgatcgatgatgtcatgcgaaacagcatatcaaagcgtggtgatcatcgccataacggcgatgaggtttctggattcatccctggattgactgcctgctccttcacctgcttgcagaacaatctgagAagagttaacctgcaattcaggttggatgagaattctgagaattttggagttcgtctggtaaaattcttcgctgaaaacgcaatggttctcgaagaattgcgcgtattgacagtggaaactgaaacctga
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| Protein seq | MAAGDDRLSDLPDDLLLRILHFANAKEAASTSLLSRRFGALWRSSGAVNLAASVPCGSRYIRSAALLARRGAFVRAAEAALSAAAAAADHRVTRLTVHVECDKEDKGSIASFLLSSENDERRSHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSDGAGIYSINPATLPSNTLRVLDLTNCRSLTPSPAAAAAAAAAAAFPRLETLRLRHCTANIDDLHRIIDAAPELAAVRLEFVHLMSNIHDVPFLVQLAMASTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAENVDDMAVHGVFFPNIARLELDGGFNRWSKTAKAAAAIASMLHCCPVLCDLNLNLISTVSPDYFKKSKQVQHFFQRKSQLDFDRSIDDVMRNSISKRGDHRHNGDEVSGFIPGLTACSFTCLQNNLRRVNLQFRLDENSENFGVRLVKFFAENAMVLEELRVLTVETET |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_01g0017520 | OsGoSa_01g0017520.01 | Chr01 | 16653849 | 16655405 | + | NAM | ||
| CDS seq | atggccgccggcgatgaccgcctgtctgacctccccgacgacctcctcctccgcatcctccacttcgcgaacgccaaggaggccgcgtccaccagcttgctctcgcggcggttcggcgcgctctggcgctcctccggcgccgtcaacctcgccgcgagcgtcccctgcggcagcagatacatcaggagcgcggccctgctcgcccgtcgcggcgccttcgttcgtgcggccgaggcggcgctctccgccgccgccgccgccgccgaccaccgcgtcacgaggctcaccgtccacgtcgagtgcgacaaggaggacaaaggctcgatcgccagcttcctcctcagcagcgagaacgacgagcgccgcagccaccgcgacgtgttcgacgccgtcctctcccacccggcggcgcgccgcgtcgaggagctcagcgtcgccgccgtccaccctcactggggcgacaagggcaacatcgtgagcagcgacggcgctgggatctacagcatcaatcccgccacccttccgtcgaacaccctccgcgttctggacctcaccaactgccgcagcctcacgccgtcgccggccgccgccgccgccgccgccgcagccgccgcgttcccgcggctggagacgctgcggctgcgacactgcacggcgaacatcgacgatctccaccgtatcatcgacgccgcgccggagctcgccgccgtgcgcctcgagttcgtccatctcatgtccaacatccacgatgtccccttcctggtgcagctggcaatggcctcaaccacccgcctccgcttcccggcggccaccgcgctcacgctgatcaactgcctcaccaacggcggcatgagcggcagcgttatcgacgcgccgaggctacgatccttgacatacaagggggcggcgaggtcgcagttcgagctaacctcgccggcgccggacatgaagatggtgcacctccatttcaaccactacttccatcaacgtgattaccttcgtttcatccataacttcaccaaggtcaaggtgctcaagctaaaggcggagaatgtcgacgacatggctgtccatggcgtattcttccccaacattgctcgcctcgagctcgacggaggtttcaaccgttggagtaagacggcgaaggccgccgccgcgatcgcgagcatgctccattgctgcccagtgctctgcgacctcaacctgaatctcatcagcacggtgtcacctgactatttcaagaaatcgaagcaagttcagcatttctttcaaagaaaatcccagcttgatttcgacaggtcgatcgatgatgtcatgcgaaacagcatatcaaagcgtggtgatcatcgccataacggcgatgaggtttctggattcatccctggattgactgcctgctccttcacctgcttgcagaacaatctgagAagagttaacctgcaattcaggttggatgagaattctgagaattttggagttcgtctggtaaaattcttcgctgaaaacgcaatggttctcgaagaattgcgcgtattgacagtggaaactgaaacctga
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| Protein seq | MAAGDDRLSDLPDDLLLRILHFANAKEAASTSLLSRRFGALWRSSGAVNLAASVPCGSRYIRSAALLARRGAFVRAAEAALSAAAAAADHRVTRLTVHVECDKEDKGSIASFLLSSENDERRSHRDVFDAVLSHPAARRVEELSVAAVHPHWGDKGNIVSSDGAGIYSINPATLPSNTLRVLDLTNCRSLTPSPAAAAAAAAAAAFPRLETLRLRHCTANIDDLHRIIDAAPELAAVRLEFVHLMSNIHDVPFLVQLAMASTTRLRFPAATALTLINCLTNGGMSGSVIDAPRLRSLTYKGAARSQFELTSPAPDMKMVHLHFNHYFHQRDYLRFIHNFTKVKVLKLKAENVDDMAVHGVFFPNIARLELDGGFNRWSKTAKAAAAIASMLHCCPVLCDLNLNLISTVSPDYFKKSKQVQHFFQRKSQLDFDRSIDDVMRNSISKRGDHRHNGDEVSGFIPGLTACSFTCLQNNLRRVNLQFRLDENSENFGVRLVKFFAENAMVLEELRVLTVETET
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021690 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021510 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005290 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017290 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0272600 | RBH | 0.05495 | 0.030477 | 0.00492 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0014460 | SBH | 0.061936 | 0.0 | 0.039578 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0465000 | SBH | 0.0400635 | 0.0958755 | 0.1437325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0007790 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013880 | RBH | 0.504329 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0007750 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021360 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005370 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017370 | RBH | 0.0 | 0.0 | 0.0 |
