Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0022340 | OGI:12069670 | 6/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:27597140-27602179 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaatgaagtcatatgcagatcctgtcaaaattagcatcaggcagaacaaggaatctggggagacaaacaaggaaaaactacaattaggtattttcttttaaaaaaatcacatactatgttgatctgaacatcatgtagaaatttaaaaaaaatatcatagtacaactttgaaaaaaaaatcacaggaaaatgttcagctgcagggtgaaggatgcaaaatattaaaaaatacattaatggttaaacactactactttcacaccattgttatcaaaactagaaaagggttaaacactcaaaacacattaacatagcacccaatcttaaatagcactatccatgctgccatacatatgcaaaatcaaacactggaagtagaaattatattaaaaattaaaattagaaattacagttgtaaaaacaatttatattgcgtgtaacttcactgtaatttttgtgaataagctatgtaaataaatatgtaatacttaacattctagtaagatggtttcagtggacatgtatactaatttattccatgaattttgcaggaatgaaatttactgaaccagtcaaggttggatccatggagaaaaaaggtattgaaacactacactacttattcaagtacaaaacatctcacaatttcaaaaacttcaactacatagccaaatataataatcacatatataccactcctttcacttgccactcaataccaaacacacagaaatacaatcacatatgtgcctaaatacagaaattttaaaaatatatgcaaaaccattctaggctaacaatcataatttgacctaaatattatggcaaaaaattacagtgctttatatctaaaattacatttgtaagttcagttgatacaacatgtaataaatccaaaaggtataaaacttacagtgatttataactaaaattacaattgtaaaaacagtttatatgacaagtaagtgcactacaaatgtggttcagtttataactaaaattacaacaatttatgactaaaattacatttgtaaattcagtttatttgtcatgtaagtacactataattttggtataattgaagtgtaacatgtatgtgtattgtaattttggtgcaaccacaatgtatttgaaaaatatattcatgtttgacataaaacatgcaaatgccacactgaacatatactgctaaagctcaatacatgctaaaaaatacaaatgattctcaaaagacatacctatttaacaaatcagtacctcatatacttcatttctcccatggcacaggtcgtgaagcaatacaagaaggagaaacaattagacaacaatcagaggagagcaaaaatgatgcaatgcagattgaaggaagcaaaagaaacatcaacatggctccaggtcagaaaatatatttgaataaattttgctctaagaataaataaaggtaactacaattatgtttgttgattctaacatatgctctaatgatttatataaattttacagggaggctggcatatgcaggaagtcctaatatctacaatttgcaggagggtgaaggaagcagcagcaaaatgccccatttaggtactaactaagtttctaaactaccaggtcgacaagctccaacaaaacaattgcaacatacactgatctaatattctgatctttatctttttcaaaatgcaggatgcaggaaaatacaacacgtaggaaaaaacttcaattcaccagaattaagcaataccataggaacaattgcatcagaagttgtcaattatggaggacaaatgctatatgatcaattcacattgctaaactcagacccaagacaggtacactaatcaaaaagcatagatgtagcatataaaactattttatacatgcagttataaactaataaacatataactgtgcaggaaggacagttgagctacactaacctcatgcaccaaataattcatagtccaactgtcaccatacagcaacaaacagtaagcatatcaacttacattatatacctgacaaaaaaaagagaaaataataaatgaactgatatgtaaactatgaatatgcagggaggacaagaaagctttacaagtctacttcggacaccagcatttgatgtaagaataaaaatttatgaatacttatgtaacaattccctaattagtcatttaaattagtactaactactgttttttgatattgcagaattcaatgatcttaacaaccagtagattttctccagaactagaagagcagcaggatatgacatatgagcaacacatatcaactacacactggagctatgaagaatttgatcagatttacaacagcaaatacatcacaccttttgctgaggtgattttagctaaaatattgacttcaaattgtttagacttaagatattttgcactattgattaacaagaacttattgtttggcagaatacaacagcaagaatagaagagctgtatcaatcaaaaaatagccatttcactacaaaggtaaaataaactttgcaacaaaaaaaccctatatcagcaagaattatcaagatataagtctaaccgtcacaaaatatgtaggacaatgaagtggatatggcgactgaaaatgatgattatgtggagctgaattcagatgatgaaaatgagcaggtatactatcacttatttgaaaaacacaatacttattcaaataatgttaggaggatagatctgcaatggtgctgacatattacttgaacaaaattttcaggaagggacttcaaacatgcttcagcaagattcccaaatcaatacaatcacagcaattgaacaagtagagcaacatgttgggcaagcagaaacaacaagtgagacaaaagctacctcagtagaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgaagaagatagccaagataacactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcatcacacaccactacaaatctacaagcaaaaaaagatttggtcagatcaccaagtacacatactagtgctacaggtatggtaagaatgatgatggtcagaagaagaaaaaaaagaaaactcagcagcagaggaatacacaggtgattgacagaactgattgcaaatgcatgctaacagtgaggcttgaaggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggataaagagaaaaagttgataaggactttgaaacaatgcaacatacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccagaaaagacgtcagcaatgttggaacagcaattaactcagagacaagaaatactgacatgaatcaagtgatggaatatctaaggcaaaaagaagcaaaagatcctggctactattacaagctgactctagataagaataacaaagttaagagcatgttctggactgatgggaggtcaacacaactctatgagcaatatggtgaatttgtgagtttcgacacaacttacaaaactaacagatataatatgccatttgctccaatagttggtgttacaggccatggaaacatatgcatttttgcatgtgcatttttaggagatgaaactacagaaactttcaaatgggtttttgaaacgttcctaacagccatgggaggaaaacatccagaaacaattataacagatcaagacttggcaatgagggcagctatacgtcaagtatttccaaacagcaaacatagaaattgtttgttccacattttgaagaaatgtagagaaaggtcaggaaatacattttcagacaagagaaggaaagatctctatgcagaatttaatgacattgtgcacaatagcttgacaagagctgaatttgaaagcctatggttgcaaatgattgcacagtacaacttggaaaatatcaaatatctggaaataatgtggagaacaaggaagaattttataccggtgtattccaaaacagatttttgcccatttatacatagcacatcacttagtgagggcacaaatgccaggtttaaaaggggagttggcccaacacatagtgtcatgacttttctactggaatatgaaacaatcaatgacatcatcttcaacactgagtatgggaaagattatgaatccagaaacaagaagccaaagtctttttggtcaaattacatgatagaagaacaagcagcagacctatacaaccatgggatatttgataagtttcaagatgaattgaagggaacactaaatctagaagtggcagctatacaacaaggaaaagcatatgaagtatatgcagcgccaaatctgaaacagcaagaattcagaccaagaagatatgttgtgatgacagacttaccacaagaaaacttcgtgtgcatatgtgcaaagttctccaaagatggaatcctatgcagccatgttttgaaagtgatgttgtatctgaaaatgagcaagattcctgataagtacataattgaaagatggaggaaaaaggagagaaaattaacggtgagcatgcaacttgcaacaaatgatgagaacagttctgtgctaaggttcaatgtattatctagaagaatatgcaacatggcatcaaaggcatcaaaaagtaaggaaacatatgagtacctgctaggagagattgataatctggatagcaaccttgacttgataattgaagatgcagctcaaaatcaagcatcaattgatgaaagcaacacggtggaaaacacaagtgaggaccaagcagaaaaagaaacaacaaatgagcaagaagatattcaagaccctgacatagctaacacaaaggggaaaaatcagcaagaacaaaagggatggtag
More
|
||||||||||
| CDS seq | atgaagtcatatgcagatcctgtcaaaattagcatcaggcagaacaaggaatctggggagacaaacaaggaaaaactacaattaggaatgaaatttactgaaccagtcaaggttggatccatggagaaaaaaggtcgtgaagcaatacaagaaggagaaacaattagacaacaatcagaggagagcaaaaatgatgcaatgcagattgaaggaagcaaaagaaacatcaacatggctccagggaggctggcatatgcaggaagtcctaatatctacaatttgcaggagggtgaaggaagcagcagcaaaatgccccatttaggatgcaggaaaatacaacacgtaggaaaaaacttcaattcaccagaattaagcaataccataggaacaattgcatcagaagttgtcaattatggaggacaaatgctatatgatcaattcacattgctaaactcagacccaagacaggaaggacagttgagctacactaacctcatgcaccaaataattcatagtccaactgtcaccatacagcaacaaacaggaggacaagaaagctttacaagtctacttcggacaccagcatttgataattcaatgatcttaacaaccagtagattttctccagaactagaagagcagcaggatatgacatatgagcaacacatatcaactacacactggagctatgaagaatttgatcagatttacaacagcaaatacatcacaccttttgctgagaatacaacagcaagaatagaagagctgtatcaatcaaaaaatagccatttcactacaaaggacaatgaagtggatatggcgactgaaaatgatgattatgtggagctgaattcagatgatgaaaatgagcaggaagggacttcaaacatgcttcagcaagattcccaaatcaatacaatcacagcaattgaacaagtagagcaacatgttgggcaagcagaaacaacaagtgagacaaaagctacctcagtagaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgaagaagatagccaagataacactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcatcacacaccactacaaatctacaagcaaaaaaagatttggtcagatcaccaagtatggtaagaatgatgatggtcagaagaagaaaaaaaagaaaactcagcagcagaggaatacacaggtgattgacagaactgattgcaaatgcatgctaacagtgaggcttgaaggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggataaagagaaaaagttgataaggactttgaaacaatgcaacatacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccagaaaagacgtcagcaattacaacttggaaaatatcaaatatctggaaataatgtggagaacaaggaagaattttataccggtgtattccaaaacagatttttgcccatttatacatagcacatcacttagtgagggcacaaatgccaggtttaaaaggggagttggcccaacacatagtgtcatgacttttctactggaatatgaaacaatcaatgacatcatcttcaacactgagtatgggaaagattatgaatccagaaacaagaagccaaagtctttttggtcaaattacatgatagaagaacaagcagcagacctatacaaccatgggatatttgataagtttcaagatgaattgaagggaacactaaatctagaagtggcagctatacaacaaggaaaagcatatgaagtatatgcagcgccaaatctgaaacagcaagaattcagaccaagaagatatgttgtgatgacagacttaccacaagaaaacttcgtgtgcatatgtgcaaagttctccaaagatggaatcctatgcagccatgttttgaaagtgatgttgtatctgaaaatgagcaagattcctgataagtacataattgaaagatggaggaaaaaggagagaaaattaacggtgagcatgcaacttgcaacaaatgatgagaacagttctgtgctaaggttcaatgtattatctagaagaatatgcaacatggcatcaaaggcatcaaaaagtaaggaaacatatgagtacctgctaggagagattgataatctggatagcaaccttgacttgataattgaagatgcagctcaaaatcaagcatcaattgatgaaagcaacacggtggaaaacacaagtgaggaccaagcagaaaaagaaacaacaaatgagcaagaagatattcaagaccctgacatagctaacacaaaggggaaaaatcagcaagaacaaaagggatggtag
More
|
||||||||||
| Protein seq | MKSYADPVKISIRQNKESGETNKEKLQLGMKFTEPVKVGSMEKKGREAIQEGETIRQQSEESKNDAMQIEGSKRNINMAPGRLAYAGSPNIYNLQEGEGSSSKMPHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQFTLLNSDPRQEGQLSYTNLMHQIIHSPTVTIQQQTGGQESFTSLLRTPAFDNSMILTTSRFSPELEEQQDMTYEQHISTTHWSYEEFDQIYNSKYITPFAENTTARIEELYQSKNSHFTTKDNEVDMATENDDYVELNSDDENEQEGTSNMLQQDSQINTITAIEQVEQHVGQAETTSETKATSVEDNDTINEEDINNYLANEEDSQDNTPVVIDKKHIPCIGKKFRTHEEARSFFNFYAYQVGFSVVITHHYKSTSKKRFGQITKYGKNDDGQKKKKKKTQQQRNTQVIDRTDCKCMLTVRLEGDVWRILSMNLNHNHTLTPNREAKFLRSHKHMTDKEKKLIRTLKQCNIPTRNMISILSFLRGGIAALPYTRKDVSNYNLENIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTSLSEGTNARFKRGVGPTHSVMTFLLEYETINDIIFNTEYGKDYESRNKKPKSFWSNYMIEEQAADLYNHGIFDKFQDELKGTLNLEVAAIQQGKAYEVYAAPNLKQQEFRPRRYVVMTDLPQENFVCICAKFSKDGILCSHVLKVMLYLKMSKIPDKYIIERWRKKERKLTVSMQLATNDENSSVLRFNVLSRRICNMASKASKSKETYEYLLGEIDNLDSNLDLIIEDAAQNQASIDESNTVENTSEDQAEKETTNEQEDIQDPDIANTKGKNQQEQKGW |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0022340 | OsCMeo_12g0022340.01 | Chr12 | 27597140 | 27602179 | + | NAM | ||
| CDS seq | atgaagtcatatgcagatcctgtcaaaattagcatcaggcagaacaaggaatctggggagacaaacaaggaaaaactacaattaggaatgaaatttactgaaccagtcaaggttggatccatggagaaaaaaggtcgtgaagcaatacaagaaggagaaacaattagacaacaatcagaggagagcaaaaatgatgcaatgcagattgaaggaagcaaaagaaacatcaacatggctccagggaggctggcatatgcaggaagtcctaatatctacaatttgcaggagggtgaaggaagcagcagcaaaatgccccatttaggatgcaggaaaatacaacacgtaggaaaaaacttcaattcaccagaattaagcaataccataggaacaattgcatcagaagttgtcaattatggaggacaaatgctatatgatcaattcacattgctaaactcagacccaagacaggaaggacagttgagctacactaacctcatgcaccaaataattcatagtccaactgtcaccatacagcaacaaacaggaggacaagaaagctttacaagtctacttcggacaccagcatttgataattcaatgatcttaacaaccagtagattttctccagaactagaagagcagcaggatatgacatatgagcaacacatatcaactacacactggagctatgaagaatttgatcagatttacaacagcaaatacatcacaccttttgctgagaatacaacagcaagaatagaagagctgtatcaatcaaaaaatagccatttcactacaaaggacaatgaagtggatatggcgactgaaaatgatgattatgtggagctgaattcagatgatgaaaatgagcaggaagggacttcaaacatgcttcagcaagattcccaaatcaatacaatcacagcaattgaacaagtagagcaacatgttgggcaagcagaaacaacaagtgagacaaaagctacctcagtagaggacaatgacactatcaatgaagaagacattaacaactacttggctaatgaagaagatagccaagataacactcctgtagtaattgacaagaaacacataccttgcattggcaagaaattcagaactcatgaagaagcgcgtagtttcttcaacttctatgcatatcaagtgggattttctgtagtcatcacacaccactacaaatctacaagcaaaaaaagatttggtcagatcaccaagtatggtaagaatgatgatggtcagaagaagaaaaaaaagaaaactcagcagcagaggaatacacaggtgattgacagaactgattgcaaatgcatgctaacagtgaggcttgaaggtgatgtttggagaatactaagcatgaatctcaaccataaccatacactcacacccaatagagaagcaaagttcctcagatcacacaaacatatgacggataaagagaaaaagttgataaggactttgaaacaatgcaacatacccacgagaaatatgatttcaatattgtcatttctcagaggaggcatagcagcactgccatataccagaaaagacgtcagcaattacaacttggaaaatatcaaatatctggaaataatgtggagaacaaggaagaattttataccggtgtattccaaaacagatttttgcccatttatacatagcacatcacttagtgagggcacaaatgccaggtttaaaaggggagttggcccaacacatagtgtcatgacttttctactggaatatgaaacaatcaatgacatcatcttcaacactgagtatgggaaagattatgaatccagaaacaagaagccaaagtctttttggtcaaattacatgatagaagaacaagcagcagacctatacaaccatgggatatttgataagtttcaagatgaattgaagggaacactaaatctagaagtggcagctatacaacaaggaaaagcatatgaagtatatgcagcgccaaatctgaaacagcaagaattcagaccaagaagatatgttgtgatgacagacttaccacaagaaaacttcgtgtgcatatgtgcaaagttctccaaagatggaatcctatgcagccatgttttgaaagtgatgttgtatctgaaaatgagcaagattcctgataagtacataattgaaagatggaggaaaaaggagagaaaattaacggtgagcatgcaacttgcaacaaatgatgagaacagttctgtgctaaggttcaatgtattatctagaagaatatgcaacatggcatcaaaggcatcaaaaagtaaggaaacatatgagtacctgctaggagagattgataatctggatagcaaccttgacttgataattgaagatgcagctcaaaatcaagcatcaattgatgaaagcaacacggtggaaaacacaagtgaggaccaagcagaaaaagaaacaacaaatgagcaagaagatattcaagaccctgacatagctaacacaaaggggaaaaatcagcaagaacaaaagggatggtag
More
|
|||||||
| Protein seq | MKSYADPVKISIRQNKESGETNKEKLQLGMKFTEPVKVGSMEKKGREAIQEGETIRQQSEESKNDAMQIEGSKRNINMAPGRLAYAGSPNIYNLQEGEGSSSKMPHLGCRKIQHVGKNFNSPELSNTIGTIASEVVNYGGQMLYDQFTLLNSDPRQEGQLSYTNLMHQIIHSPTVTIQQQTGGQESFTSLLRTPAFDNSMILTTSRFSPELEEQQDMTYEQHISTTHWSYEEFDQIYNSKYITPFAENTTARIEELYQSKNSHFTTKDNEVDMATENDDYVELNSDDENEQEGTSNMLQQDSQINTITAIEQVEQHVGQAETTSETKATSVEDNDTINEEDINNYLANEEDSQDNTPVVIDKKHIPCIGKKFRTHEEARSFFNFYAYQVGFSVVITHHYKSTSKKRFGQITKYGKNDDGQKKKKKKTQQQRNTQVIDRTDCKCMLTVRLEGDVWRILSMNLNHNHTLTPNREAKFLRSHKHMTDKEKKLIRTLKQCNIPTRNMISILSFLRGGIAALPYTRKDVSNYNLENIKYLEIMWRTRKNFIPVYSKTDFCPFIHSTSLSEGTNARFKRGVGPTHSVMTFLLEYETINDIIFNTEYGKDYESRNKKPKSFWSNYMIEEQAADLYNHGIFDKFQDELKGTLNLEVAAIQQGKAYEVYAAPNLKQQEFRPRRYVVMTDLPQENFVCICAKFSKDGILCSHVLKVMLYLKMSKIPDKYIIERWRKKERKLTVSMQLATNDENSSVLRFNVLSRRICNMASKASKSKETYEYLLGEIDNLDSNLDLIIEDAAQNQASIDESNTVENTSEDQAEKETTNEQEDIQDPDIANTKGKNQQEQKGW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71850 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021890 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021970 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046870 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006110 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0021040 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0364500 | RBH | 0 | 0.0523985 | 0.004156 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014760 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0394900 | SBH | 7.151125 | 25.735785 | 49.6192705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0020340 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0020310 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008110 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000220 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000220 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0020080 | SBH | 0.0 | 0.0 | 0.0 |
