Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0022320 | OGI:12069650 | 6/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:27588481-27592011 | ||||||||
| Gene Symbol | HAIKU2, MEG1 | ||||||||||
| DNA seq | aggctgctgacctacttactaccttaaagccaatcagtcagcttcacacactgacaccaaaggaagcatctttcttccttctcttcctcctcttcccggcagccatgccgccgccctcccttctcctccctcctctcctcctcctcctcggcctccatgccgccgccgccgccgtctccgaggtgtcggccctcatggccttcaagaacgccctcaccatccctcccaccgccgccgccttcttcgcccggtgggacgccgccgcggcttccccctgcaacttcaccggcgtcgactgcgccaattccggcggcggaggcgtcaccgccgtcgccgtggagggcttgggcgtggccgcaacgtccgtcccgttcgacgttctgtgcggctcgctgccttcgctcgtgaagctctccctgccgtcgaacacgctcgccggagggatcggcggcgtcgcggggtgcaccgccctcgaggtgctcgacctcgcgtttaatgacttctccggccacgtcccggacctctcgccgctgacgaggctgcagaggctcaacgtgtcgcagaacagcttcaccggcgccttcccatggcgcgcgctggcgtccatgccgggtctcaccgtgctcgccgccggcgacaatgggttcttcgagaagacggagacgttccccgacgagatcaccgcgctcaccaacctcaccgtgctctacctctccgcggccaacatcggcggcgtcatccctcccggcatcggcaacctcgtcaagctcgtcgacctcgagctctccgacaacgcgctcaccggcgagataccgccggagatcaccaagctcaccaacctcctgcagctcgagctgtacaacaactcgctccacggcgagctcccggcggggttcgggaacctgacgaagctccagttcttcgacgcgtccatgaaccacctcaccggcagcctctccgagctccggtcgctcacccagctcgtgtctctgcagctgttctacaatggcttcaccggcgacgtgccgccggagttcggcgagttcaaggagctcgtgaacctgtccctgtacaacaacaacctcaccggcgagctgccgcggaatctcggcagctgggcggagttcaacttcatcgacgtgtcgaccaacgcgctgtccggcccgatcccgccgtacatgtgcaagcgcggcacgatgaccaggctgctcatgctggagaacaacttctccggcgagattccggccacctacgcgaactgcacgacgctggtgaggttcagggtgaacaagaactccatgtccggcgatgtgcccgacgggttgtgggcgctccccaacgtcaacatcatcgacctcgccggcaaccagttcacaggcggcatcggcgacggcatcgggagagccgcctcgctgagcagcctcgacctggccgggaacaggttctccggcgcgatcccgccgtcgatcggcgacgccagcaacctcgagacaattgacatttcgtcgaacgggttgtcggacgagattccggcgagcatcgggaggctggcacgtctcggcagcttgaacattgctaggaatgggatcaccggggccatcccggcgagcatcggcgagtgctcgtcgcttagtacggtcaatttcaccgggaacaagctcgccggcgcgatcccgtcggagctggggatcctgccgcggcttaattctttggacttgtccgggaatgacctctccggtgccgtgccggcgagcctcgccgcgctgaagctgagttccctgaacatgtccgacaacaagctcgtcgggcccgtgccggagccgctcgccatcgcggcctacggcgagagcttcaaggggaaccccgggctgtgcgccaccaacggagtggacttcctccgccgctgctcgccgggagcaggaggccactccgcggccaccgcgcgcaccgtggtcacctgcctcctcgccggcctcaccgtcgtgctcgcggcgctcggcgcggtgatgtacatcaagaagcggcggcgcgcggaggcggaggcggaggaggcggccggcggcaaggtgttcggcaagaaggggtcgtgggacctcaagtcgttcagggtcctggcgttcgacgagcacgaggtgatcgacggcgtccgcgacgagaacctcatcggcagcggcgggtccgggaacgtgtaccgcgtgaagctcgggagcggcgcggtggtcgcggtgaagcacatcacccggacgctcgcggcggcggcgaggagcacggcgccgtcggccgccatgctccggtcgccgtcggcggcgcggcgcacggcgtcggtgcggtgccgcgagttcgactcggaggtggggacgctgagctcgatccggcacgtgaacgtggtgaagctcctgtgcagcatcaccagcgacgacggcgcggcgagcctgctggtgtacgagcacctccccaatggcagcctctacgagcgcctgcacgaggggcaaaagctcggcggcggccgcctcgggtggccggagcgctacgacatcgccgtcggcgccgcccgtgggctggagtacctccaccacggctgcgaccgccccatcctccaccgcgacgtcaagtccagcaacatcctcctcgacgagtccttcaagccgcgcatcgccgacttcggcctcgccaagatcctcgacggcgccgccgcgacgccggacaccaccagcgcgggcgtggtggccggcacgctcgggtacatggcgcccgagtacgcctacacgtggaaggtgacggagaagagcgacgtgtacagcttcggcgtggtgctgcttgagctggtcacggggcggacggcgatcatggcggagtacggggagggcagggacatcgtggagtgggtgtttcgccggttagatagccgagacaaggtgatgtccctcctcgacgccagcatcgccgaggaatgggagaaggaggaggcggtcagggtgctccgtgtcgccgtggtgtgcaccagcaggacgccgtcgatgaggccgtcgatgcgctccgtcgtgcagatgctcgaggcggccgggatcggccgggagttggccatggtcacttcggtgaaggtcaaggtgatcgcctaggactaggaggcatttggaccataagggggagtgaacaacgtgggtccttgttggtcatccgatcagagaatcaacggctcagatcaagcgtgatcaaacacgaataattcatcgtcgtggctcgatctcaaccgtacttcatcgatcggtggtttccaaagcttgtagttattacattagaaaatcagcttcagatgagatgaaattagcaaaaaatatatgtagataggacaatcaatcatgaatcatattccaggtcaatgatgcagtagcatactagcatgagtgcacaagtgagatttccacataataatggaatctgtagttagtactcgtactagtatgtgtgtaactgtaaaacagtaaattttgctaaatcattttcaggtcaatgcagtgaaaatactctgcc
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| CDS seq | atgccgccgccctcccttctcctccctcctctcctcctcctcctcggcctccatgccgccgccgccgccgtctccgaggtgtcggccctcatggccttcaagaacgccctcaccatccctcccaccgccgccgccttcttcgcccggtgggacgccgccgcggcttccccctgcaacttcaccggcgtcgactgcgccaattccggcggcggaggcgtcaccgccgtcgccgtggagggcttgggcgtggccgcaacgtccgtcccgttcgacgttctgtgcggctcgctgccttcgctcgtgaagctctccctgccgtcgaacacgctcgccggagggatcggcggcgtcgcggggtgcaccgccctcgaggtgctcgacctcgcgtttaatgacttctccggccacgtcccggacctctcgccgctgacgaggctgcagaggctcaacgtgtcgcagaacagcttcaccggcgccttcccatggcgcgcgctggcgtccatgccgggtctcaccgtgctcgccgccggcgacaatgggttcttcgagaagacggagacgttccccgacgagatcaccgcgctcaccaacctcaccgtgctctacctctccgcggccaacatcggcggcgtcatccctcccggcatcggcaacctcgtcaagctcgtcgacctcgagctctccgacaacgcgctcaccggcgagataccgccggagatcaccaagctcaccaacctcctgcagctcgagctgtacaacaactcgctccacggcgagctcccggcggggttcgggaacctgacgaagctccagttcttcgacgcgtccatgaaccacctcaccggcagcctctccgagctccggtcgctcacccagctcgtgtctctgcagctgttctacaatggcttcaccggcgacgtgccgccggagttcggcgagttcaaggagctcgtgaacctgtccctgtacaacaacaacctcaccggcgagctgccgcggaatctcggcagctgggcggagttcaacttcatcgacgtgtcgaccaacgcgctgtccggcccgatcccgccgtacatgtgcaagcgcggcacgatgaccaggctgctcatgctggagaacaacttctccggcgagattccggccacctacgcgaactgcacgacgctggtgaggttcagggtgaacaagaactccatgtccggcgatgtgcccgacgggttgtgggcgctccccaacgtcaacatcatcgacctcgccggcaaccagttcacaggcggcatcggcgacggcatcgggagagccgcctcgctgagcagcctcgacctggccgggaacaggttctccggcgcgatcccgccgtcgatcggcgacgccagcaacctcgagacaattgacatttcgtcgaacgggttgtcggacgagattccggcgagcatcgggaggctggcacgtctcggcagcttgaacattgctaggaatgggatcaccggggccatcccggcgagcatcggcgagtgctcgtcgcttagtacggtcaatttcaccgggaacaagctcgccggcgcgatcccgtcggagctggggatcctgccgcggcttaattctttggacttgtccgggaatgacctctccggtgccgtgccggcgagcctcgccgcgctgaagctgagttccctgaacatgtccgacaacaagctcgtcgggcccgtgccggagccgctcgccatcgcggcctacggcgagagcttcaaggggaaccccgggctgtgcgccaccaacggagtggacttcctccgccgctgctcgccgggagcaggaggccactccgcggccaccgcgcgcaccgtggtcacctgcctcctcgccggcctcaccgtcgtgctcgcggcgctcggcgcggtgatgtacatcaagaagcggcggcgcgcggaggcggaggcggaggaggcggccggcggcaaggtgttcggcaagaaggggtcgtgggacctcaagtcgttcagggtcctggcgttcgacgagcacgaggtgatcgacggcgtccgcgacgagaacctcatcggcagcggcgggtccgggaacgtgtaccgcgtgaagctcgggagcggcgcggtggtcgcggtgaagcacatcacccggacgctcgcggcggcggcgaggagcacggcgccgtcggccgccatgctccggtcgccgtcggcggcgcggcgcacggcgtcggtgcggtgccgcgagttcgactcggaggtggggacgctgagctcgatccggcacgtgaacgtggtgaagctcctgtgcagcatcaccagcgacgacggcgcggcgagcctgctggtgtacgagcacctccccaatggcagcctctacgagcgcctgcacgaggggcaaaagctcggcggcggccgcctcgggtggccggagcgctacgacatcgccgtcggcgccgcccgtgggctggagtacctccaccacggctgcgaccgccccatcctccaccgcgacgtcaagtccagcaacatcctcctcgacgagtccttcaagccgcgcatcgccgacttcggcctcgccaagatcctcgacggcgccgccgcgacgccggacaccaccagcgcgggcgtggtggccggcacgctcgggtacatggcgcccgagtacgcctacacgtggaaggtgacggagaagagcgacgtgtacagcttcggcgtggtgctgcttgagctggtcacggggcggacggcgatcatggcggagtacggggagggcagggacatcgtggagtgggtgtttcgccggttagatagccgagacaaggtgatgtccctcctcgacgccagcatcgccgaggaatgggagaaggaggaggcggtcagggtgctccgtgtcgccgtggtgtgcaccagcaggacgccgtcgatgaggccgtcgatgcgctccgtcgtgcagatgctcgaggcggccgggatcggccgggagttggccatggtcacttcggtgaaggtcaaggtgatcgcctag
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| Protein seq | MPPPSLLLPPLLLLLGLHAAAAAVSEVSALMAFKNALTIPPTAAAFFARWDAAAASPCNFTGVDCANSGGGGVTAVAVEGLGVAATSVPFDVLCGSLPSLVKLSLPSNTLAGGIGGVAGCTALEVLDLAFNDFSGHVPDLSPLTRLQRLNVSQNSFTGAFPWRALASMPGLTVLAAGDNGFFEKTETFPDEITALTNLTVLYLSAANIGGVIPPGIGNLVKLVDLELSDNALTGEIPPEITKLTNLLQLELYNNSLHGELPAGFGNLTKLQFFDASMNHLTGSLSELRSLTQLVSLQLFYNGFTGDVPPEFGEFKELVNLSLYNNNLTGELPRNLGSWAEFNFIDVSTNALSGPIPPYMCKRGTMTRLLMLENNFSGEIPATYANCTTLVRFRVNKNSMSGDVPDGLWALPNVNIIDLAGNQFTGGIGDGIGRAASLSSLDLAGNRFSGAIPPSIGDASNLETIDISSNGLSDEIPASIGRLARLGSLNIARNGITGAIPASIGECSSLSTVNFTGNKLAGAIPSELGILPRLNSLDLSGNDLSGAVPASLAALKLSSLNMSDNKLVGPVPEPLAIAAYGESFKGNPGLCATNGVDFLRRCSPGAGGHSAATARTVVTCLLAGLTVVLAALGAVMYIKKRRRAEAEAEEAAGGKVFGKKGSWDLKSFRVLAFDEHEVIDGVRDENLIGSGGSGNVYRVKLGSGAVVAVKHITRTLAAAARSTAPSAAMLRSPSAARRTASVRCREFDSEVGTLSSIRHVNVVKLLCSITSDDGAASLLVYEHLPNGSLYERLHEGQKLGGGRLGWPERYDIAVGAARGLEYLHHGCDRPILHRDVKSSNILLDESFKPRIADFGLAKILDGAAATPDTTSAGVVAGTLGYMAPEYAYTWKVTEKSDVYSFGVVLLELVTGRTAIMAEYGEGRDIVEWVFRRLDSRDKVMSLLDASIAEEWEKEEAVRVLRVAVVCTSRTPSMRPSMRSVVQMLEAAGIGRELAMVTSVKVKVIA |
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| Function | Receptor-like protein kinase 7 [UniProtKB/Swiss-Prot:F4I2N7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0022320 | OsCMeo_12g0022320.01 | Chr12 | 27588481 | 27592011 | + | NAM | ||
| CDS seq | atgccgccgccctcccttctcctccctcctctcctcctcctcctcggcctccatgccgccgccgccgccgtctccgaggtgtcggccctcatggccttcaagaacgccctcaccatccctcccaccgccgccgccttcttcgcccggtgggacgccgccgcggcttccccctgcaacttcaccggcgtcgactgcgccaattccggcggcggaggcgtcaccgccgtcgccgtggagggcttgggcgtggccgcaacgtccgtcccgttcgacgttctgtgcggctcgctgccttcgctcgtgaagctctccctgccgtcgaacacgctcgccggagggatcggcggcgtcgcggggtgcaccgccctcgaggtgctcgacctcgcgtttaatgacttctccggccacgtcccggacctctcgccgctgacgaggctgcagaggctcaacgtgtcgcagaacagcttcaccggcgccttcccatggcgcgcgctggcgtccatgccgggtctcaccgtgctcgccgccggcgacaatgggttcttcgagaagacggagacgttccccgacgagatcaccgcgctcaccaacctcaccgtgctctacctctccgcggccaacatcggcggcgtcatccctcccggcatcggcaacctcgtcaagctcgtcgacctcgagctctccgacaacgcgctcaccggcgagataccgccggagatcaccaagctcaccaacctcctgcagctcgagctgtacaacaactcgctccacggcgagctcccggcggggttcgggaacctgacgaagctccagttcttcgacgcgtccatgaaccacctcaccggcagcctctccgagctccggtcgctcacccagctcgtgtctctgcagctgttctacaatggcttcaccggcgacgtgccgccggagttcggcgagttcaaggagctcgtgaacctgtccctgtacaacaacaacctcaccggcgagctgccgcggaatctcggcagctgggcggagttcaacttcatcgacgtgtcgaccaacgcgctgtccggcccgatcccgccgtacatgtgcaagcgcggcacgatgaccaggctgctcatgctggagaacaacttctccggcgagattccggccacctacgcgaactgcacgacgctggtgaggttcagggtgaacaagaactccatgtccggcgatgtgcccgacgggttgtgggcgctccccaacgtcaacatcatcgacctcgccggcaaccagttcacaggcggcatcggcgacggcatcgggagagccgcctcgctgagcagcctcgacctggccgggaacaggttctccggcgcgatcccgccgtcgatcggcgacgccagcaacctcgagacaattgacatttcgtcgaacgggttgtcggacgagattccggcgagcatcgggaggctggcacgtctcggcagcttgaacattgctaggaatgggatcaccggggccatcccggcgagcatcggcgagtgctcgtcgcttagtacggtcaatttcaccgggaacaagctcgccggcgcgatcccgtcggagctggggatcctgccgcggcttaattctttggacttgtccgggaatgacctctccggtgccgtgccggcgagcctcgccgcgctgaagctgagttccctgaacatgtccgacaacaagctcgtcgggcccgtgccggagccgctcgccatcgcggcctacggcgagagcttcaaggggaaccccgggctgtgcgccaccaacggagtggacttcctccgccgctgctcgccgggagcaggaggccactccgcggccaccgcgcgcaccgtggtcacctgcctcctcgccggcctcaccgtcgtgctcgcggcgctcggcgcggtgatgtacatcaagaagcggcggcgcgcggaggcggaggcggaggaggcggccggcggcaaggtgttcggcaagaaggggtcgtgggacctcaagtcgttcagggtcctggcgttcgacgagcacgaggtgatcgacggcgtccgcgacgagaacctcatcggcagcggcgggtccgggaacgtgtaccgcgtgaagctcgggagcggcgcggtggtcgcggtgaagcacatcacccggacgctcgcggcggcggcgaggagcacggcgccgtcggccgccatgctccggtcgccgtcggcggcgcggcgcacggcgtcggtgcggtgccgcgagttcgactcggaggtggggacgctgagctcgatccggcacgtgaacgtggtgaagctcctgtgcagcatcaccagcgacgacggcgcggcgagcctgctggtgtacgagcacctccccaatggcagcctctacgagcgcctgcacgaggggcaaaagctcggcggcggccgcctcgggtggccggagcgctacgacatcgccgtcggcgccgcccgtgggctggagtacctccaccacggctgcgaccgccccatcctccaccgcgacgtcaagtccagcaacatcctcctcgacgagtccttcaagccgcgcatcgccgacttcggcctcgccaagatcctcgacggcgccgccgcgacgccggacaccaccagcgcgggcgtggtggccggcacgctcgggtacatggcgcccgagtacgcctacacgtggaaggtgacggagaagagcgacgtgtacagcttcggcgtggtgctgcttgagctggtcacggggcggacggcgatcatggcggagtacggggagggcagggacatcgtggagtgggtgtttcgccggttagatagccgagacaaggtgatgtccctcctcgacgccagcatcgccgaggaatgggagaaggaggaggcggtcagggtgctccgtgtcgccgtggtgtgcaccagcaggacgccgtcgatgaggccgtcgatgcgctccgtcgtgcagatgctcgaggcggccgggatcggccgggagttggccatggtcacttcggtgaaggtcaaggtgatcgcctag
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| Protein seq | MPPPSLLLPPLLLLLGLHAAAAAVSEVSALMAFKNALTIPPTAAAFFARWDAAAASPCNFTGVDCANSGGGGVTAVAVEGLGVAATSVPFDVLCGSLPSLVKLSLPSNTLAGGIGGVAGCTALEVLDLAFNDFSGHVPDLSPLTRLQRLNVSQNSFTGAFPWRALASMPGLTVLAAGDNGFFEKTETFPDEITALTNLTVLYLSAANIGGVIPPGIGNLVKLVDLELSDNALTGEIPPEITKLTNLLQLELYNNSLHGELPAGFGNLTKLQFFDASMNHLTGSLSELRSLTQLVSLQLFYNGFTGDVPPEFGEFKELVNLSLYNNNLTGELPRNLGSWAEFNFIDVSTNALSGPIPPYMCKRGTMTRLLMLENNFSGEIPATYANCTTLVRFRVNKNSMSGDVPDGLWALPNVNIIDLAGNQFTGGIGDGIGRAASLSSLDLAGNRFSGAIPPSIGDASNLETIDISSNGLSDEIPASIGRLARLGSLNIARNGITGAIPASIGECSSLSTVNFTGNKLAGAIPSELGILPRLNSLDLSGNDLSGAVPASLAALKLSSLNMSDNKLVGPVPEPLAIAAYGESFKGNPGLCATNGVDFLRRCSPGAGGHSAATARTVVTCLLAGLTVVLAALGAVMYIKKRRRAEAEAEEAAGGKVFGKKGSWDLKSFRVLAFDEHEVIDGVRDENLIGSGGSGNVYRVKLGSGAVVAVKHITRTLAAAARSTAPSAAMLRSPSAARRTASVRCREFDSEVGTLSSIRHVNVVKLLCSITSDDGAASLLVYEHLPNGSLYERLHEGQKLGGGRLGWPERYDIAVGAARGLEYLHHGCDRPILHRDVKSSNILLDESFKPRIADFGLAKILDGAAATPDTTSAGVVAGTLGYMAPEYAYTWKVTEKSDVYSFGVVLLELVTGRTAIMAEYGEGRDIVEWVFRRLDSRDKVMSLLDASIAEEWEKEEAVRVLRVAVVCTSRTPSMRPSMRSVVQMLEAAGIGRELAMVTSVKVKVIA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.357023 | 9.464678 | 4.309004 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0632800 | RBH | 4.831923 | 5.202940 | 3.219376 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43640 | RBH | 3.230233 | 3.475888 | 0.827319 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0632800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021870 | RBH | 0.188288 | 8.881842 | 3.507005 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021950 | RBH | 0.200986 | 3.773162 | 2.264679 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021310 | SBH | 1.230829 | 3.064142 | 4.759541 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0364400 | RBH | 6.242127 | 49.5027905 | 9.043295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0396500 | RBH | 9.3424965 | 54.222101 | 0.3768915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021420 | SBH | 0.125221 | 0.112399 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021650 | SBH | 0.861606 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021540 | SBH | 1.003323 | 11.623171 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021620 | SBH | 1.201175 | 0.0 | 2.811115 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021320 | SBH | 0.160379 | 1.025728 | 0.690633 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021070 | SBH | 0.614873 | 25.745907 | 3.841661 |
