Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0022110 | OGI:12069240 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:27408646-27409536 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccacattgcaagcagcagctagctagcagaagaagcaaccatggccaatactcgcgtcttcgtcctcctcctcctcgccgtcgccgtcgccgtcgtctacagcgccgacgcggcgaccatcaccgtggtgaaccgctgccgctacacggtgtggccgggcgcgctgcccggcggcggcgtgcggctcgacccaggcaagtcgtggacgctcaacgtcgccgccggcaccaaggccgccaggatctggccccgcaccggctgcgacttcgacggcgccggccgcggccgctgcctcaccggcgactgccgcaacgcgctctcctgcgccgtctccggcgcgccgccgaccacgctggccgagtacacgctcggcaccccgggcgccgccggcggcgacgccaccgactacttcgacctgtcactgatcgacgggttcaacgtgccgatgagcttccagccgacgagcaacgcggcgcggtgcggcgcccggcggcgcgggccgagctgcggcgtggacatcacggcgcagtgcctccccgagctgaaggtggccggaggctgcgacagcgcgtgcggcaagttcggcggcgacgcctactgctgccgggggaagtacgagcacgagtgcccgccgacgaaatactccaagttcttcaaggacaagtgccccgacgcgtacagctacgccaaggatgatcggagcagcactttcacctgccctgccggaacaaattaccagatcgtcatgtgcccttaattaataattaagctaatataagatgtgataataaggggtagtgatcttgtgtgttgatcactaccattaccatgcatgcgtgcatgcgtacgtgttgttcaatatataataaatgaataaaaactcttatctt
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| CDS seq | atggccaatactcgcgtcttcgtcctcctcctcctcgccgtcgccgtcgccgtcgtctacagcgccgacgcggcgaccatcaccgtggtgaaccgctgccgctacacggtgtggccgggcgcgctgcccggcggcggcgtgcggctcgacccaggcaagtcgtggacgctcaacgtcgccgccggcaccaaggccgccaggatctggccccgcaccggctgcgacttcgacggcgccggccgcggccgctgcctcaccggcgactgccgcaacgcgctctcctgcgccgtctccggcgcgccgccgaccacgctggccgagtacacgctcggcaccccgggcgccgccggcggcgacgccaccgactacttcgacctgtcactgatcgacgggttcaacgtgccgatgagcttccagccgacgagcaacgcggcgcggtgcggcgcccggcggcgcgggccgagctgcggcgtggacatcacggcgcagtgcctccccgagctgaaggtggccggaggctgcgacagcgcgtgcggcaagttcggcggcgacgcctactgctgccgggggaagtacgagcacgagtgcccgccgacgaaatactccaagttcttcaaggacaagtgccccgacgcgtacagctacgccaaggatgatcggagcagcactttcacctgccctgccggaacaaattaccagatcgtcatgtgcccttaa
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| Protein seq | MANTRVFVLLLLAVAVAVVYSADAATITVVNRCRYTVWPGALPGGGVRLDPGKSWTLNVAAGTKAARIWPRTGCDFDGAGRGRCLTGDCRNALSCAVSGAPPTTLAEYTLGTPGAAGGDATDYFDLSLIDGFNVPMSFQPTSNAARCGARRRGPSCGVDITAQCLPELKVAGGCDSACGKFGGDAYCCRGKYEHECPPTKYSKFFKDKCPDAYSYAKDDRSSTFTCPAGTNYQIVMCP |
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| Function | Thaumatin-like protein [UniProtKB/Swiss-Prot:P81370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0022110 | OsCMeo_12g0022110.01 | Chr12 | 27408646 | 27409536 | + | NAM | ||
| CDS seq | atggccaatactcgcgtcttcgtcctcctcctcctcgccgtcgccgtcgccgtcgtctacagcgccgacgcggcgaccatcaccgtggtgaaccgctgccgctacacggtgtggccgggcgcgctgcccggcggcggcgtgcggctcgacccaggcaagtcgtggacgctcaacgtcgccgccggcaccaaggccgccaggatctggccccgcaccggctgcgacttcgacggcgccggccgcggccgctgcctcaccggcgactgccgcaacgcgctctcctgcgccgtctccggcgcgccgccgaccacgctggccgagtacacgctcggcaccccgggcgccgccggcggcgacgccaccgactacttcgacctgtcactgatcgacgggttcaacgtgccgatgagcttccagccgacgagcaacgcggcgcggtgcggcgcccggcggcgcgggccgagctgcggcgtggacatcacggcgcagtgcctccccgagctgaaggtggccggaggctgcgacagcgcgtgcggcaagttcggcggcgacgcctactgctgccgggggaagtacgagcacgagtgcccgccgacgaaatactccaagttcttcaaggacaagtgccccgacgcgtacagctacgccaaggatgatcggagcagcactttcacctgccctgccggaacaaattaccagatcgtcatgtgcccttaa
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| Protein seq | MANTRVFVLLLLAVAVAVVYSADAATITVVNRCRYTVWPGALPGGGVRLDPGKSWTLNVAAGTKAARIWPRTGCDFDGAGRGRCLTGDCRNALSCAVSGAPPTTLAEYTLGTPGAAGGDATDYFDLSLIDGFNVPMSFQPTSNAARCGARRRGPSCGVDITAQCLPELKVAGGCDSACGKFGGDAYCCRGKYEHECPPTKYSKFFKDKCPDAYSYAKDDRSSTFTCPAGTNYQIVMCP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.938790 | 18.348543 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0630200 | RBH | 0.543455 | 0.0 | 28.651409 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43450 | RBH | 0.358715 | 0.0 | 7.211046 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0630200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021670 | RBH | 0.0 | 0.0 | 3.387060 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021750 | RBH | 0.144668 | 0.0 | 9.688683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022120 | RBH | 0.381819 | 16.063080 | 0.600271 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021110 | RBH | 5.084748 | 0.000000 | 31.870071 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0361800 | RBH | 4.8655815 | 0.0234435 | 0.080151 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0393700 | RBH | 9.152587 | 0 | 0.0340745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021250 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021470 | RBH | 0.095437 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021370 | RBH | 5.311682 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021440 | RBH | 0.411471 | 0.0 | 12.711285 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021660 | RBH | 0.649245 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021120 | RBH | 0.0 | 1.175523 | 2.397020 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020880 | RBH | 0.0 | 0.0 | 19.740177 |
