Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0018260 | OGI:12060890 | 5/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:23818783-23822177 | ||||||||
| Gene Symbol | OsFbox669, Os_F0383 | ||||||||||
| DNA seq | ttaaattcctatcacgaactgggcaggattttgagtttgatagttcaatgcccagatcaaacctgctcatctacacatggagcatatatatgttaaaatagtttttggtgcaggtgtaaattcacgtaagcacaccattaaagccttaaattaaaagtaactttctatacaagagatgatgtaaaatttgaaaagtaaacactcaattttgttcgtgagatatgagactgataaaaaaaagaagaggatttcatatatatcaaacaaaattgtatagggctattacatggttgcattttatcacctcctacgtacacatgagtccttttcggtgaatttcacccactttacaatgtgttttacacggaataacaaccgtagcttctagggagggcttcaaatcatattaaccgaccttacaaatcatagctttgtaactcggacaaggctctccagaaaaccaaagagtcaagagagaaatttgagttataggaaaggagaggagagtgtgaaggcgaaggagacaaaatttgtattaaagtgggggaatagtttcatataattctaacatcgatattgtaagctaagtaagaatcctgctacccccataaaaactcgttacatagtatattttgcacttgttagcataaatttagaagaaaacaataataaaattgtttattcttatatttttagattacatggcagacgaacatgcacacacatcactatacacgcaacaccacactcacaccctgtgaatgcgtctcctaacacatgctccaagagacgaaaaccagtggagtgagaaaaacactgcttgcccatcccacttccatcccacttgttcctctgtgtaatgtttatatatggaacatatagggcctgtttggttcacaccctaagaatcacgcctgagtcaggcatgattctcaggcgtctgattttggtggcttgtggttggatgcacctgcctgagtgagagcgcttaggtcagggcaccatccaaacacgcccatatatcctatgcatacaagctttacgtacacactccgtgcgcaccaactagcaaatgttccgtaaaattttacaaaaaaaatggatatttactcataatagtatacatatatgcaaagtctcatattcaaattcattatattttagctgtaacaaaaataattgaaaattttgattgttttagcagtaaaaatttgttagaagtttatctttttgttatggttaaaatataataaattgaagataagatttcacaagtatatgaaatattcattggaagtatgtgtctaattttttttctagaattttttgtgacatttgatagttgatgtacacgagaatatcattgctctacacatcccacatgtcgccaatgtaacggctgttcgctcgacgcgcacgcttgggcctttcaagtgcccccatcttcatcgccgccgtctcccctgccgtcgccgtcgccgtcaccgtcactgccttgttaatgggcctcgtggcagtaacccggacaaggctctccgtgtagggaatcaccatgaacgcgtagggctttcccgggaaaccccattcaaattcgaactcatccattcgcgccacttccatgacactctcctcgccaccacccgagtcatggtggtacaggtgtacacccttctgaagaagcagtcgatcatggcggcgaagcacccccaatggcaggtacatggcgtccggccccgacacggcgatgctgaaccgctgctcccattgccaccgatcatcgccgccgccgccgccattgttactgtacacccagagctcttgccgacctgacacgagcagcccgatgcacagctcgccgtcgagctcggacagcaatggcggtgccagtggagatgatggccgtggatggtggacgacggtgaacgtttcgtgagctagattgaagcggaggaggaggaagctgcccgccgccgccgccggcgatcgtcggagttggagtttccagaagaggtttccgctggagtggatggcggttcgcacgtggcagaccgggtacgacggcggcggcggcgtcgtcgtctccctccaggcggcggcgtcgccgtggccgatcgtgaacacctccatgacagcggcgccgtcgtcgtcggcggcggcgccgtcggcggcggcggtggagaggtggacgtagcgagcgaccttgtaggtgtttgtgcgagcgtcgaggcccagcccggtcgagtgccgccacgacgcgccggcggcggcgacacggctgctttgaggcagcgtgaggacgtcgccggtggccgggttgatgacgtggacgtcgtcgccgttggggagcagcacgaggccgtcgcaggtgcggggcagcgacagggtgggctcctcgccgccgtcgccgaacaccgacacgtgcgcgagccgcgggcaccggcggcggccatcgccggcgccgtccggccaccggaggcggtagaaggggacgtggttggagaaggcgagccgcccctcggcatcctccaccaacgcgtacaggaggaggaggaaggaggaggagtgctccttcttgcggcggcggcggaggaaggaggaggggtcgccggagatggcggcgcgccacgcggcgcagacggaggcgaaccgcgcgagggacctcgccggcagccgggtgaggatctcgtcggcgacgaggtcatccggcaagcgacggagacaggtcccgggctccgtcgctaccgtctccattgtcgttagccgtatatataaaaaaaaatatcagtcggtcaccggaaaaacgctactagtcggccgggcttgcttctccttctcttgtatctcttgatatatatcttcccttgctgctgctggaatattgttgatgatatgtttctgcttgtgatcttacgcatggtgcgttcttcaattcggttcagggggatacaagaattaaccaaagacgtataagggcatgtacaatggtgtttaatagcgggctcttttcgttgtcatgcaagtaaatttggtgacgtggaggaaagagagggaagaaataagaaacatggttgctacgcatgacaacggctcagagtcgactcttagcatttattaacggaaagtttgttgcatgagagtatagaaaaggaaagaagtataataaaaaaaatatttagtgcattaatggtttataaatcttattatctctactattgtaggaggatggtctctagtgacattaattaatacagagagctcatattagactctacctttgtacatgccctaagaatatccagtgatcgatcgtctctataccgaaacgggttcgatcctactctgtgtcggggatctctataccgaaacgtgggccgggccggcttcgtctcctccat
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| CDS seq | atggaggagacgaagccggcccggcccacgtttcggtatagagatccccgacacagagagcactcctcctccttcctcctcctcctgtacgcgttggtggaggatgccgaggggcggctcgccttctccaaccacgtccccttctaccgcctccggtggccggacggcgccggcgatggccgccgccggtgcccgcggctcgcgcacgtgtcggtgttcggcgacggcggcgaggagcccaccctgtcgctgccccgcacctgcgacggcctcgtgctgctccccaacggcgacgacgtccacgtcatcaacccggccaccggcgacgtcctcacgctgcctcaaagcagccgtgtcgccgccgccggcgcgtcgtggcggcactcgaccgggctgggcctcgacgctcgcacaaacacctacaaggtcgctcgctacgtccacctctccaccgccgccgccgacggcgccgccgccgacgacgacggcgccgctgtcatggaggtgttcacgatcggccacggcgacgccgccgcctggagggagacgacgacgccgccgccgccgtcgtacccggtctgccacgtgcgaaccgccatccactccagcggaaacctcttctggaaactccaactccgacgatcgccggcggcggcggcgggcagcttcctcctcctccgcttcaatctagctcacgaaacgttcaccgtcgtccaccatccacggccatcatctccactggcaccgccattgctgtccgagctcgacggcgagctgtgcatcgggctgctcgtgtcaggtcggcaagagctctgggtgtacagtaacaatggcggcggcggcggcgatgatcggtggcaatgggagcagcggttcagcatcgccgtgtcggggccggacgccatgtacctgccattgggggtgcttcgccgccatgatcgactgcttcttcagaagggtgtacacctgtaccaccatgactcgggtggtggcgaggagagtgtcatggaagtggcgcgaatggatgagttcgaatttgaatggggtttcccgggaaagccctacgcgttcatggtgattccctacacggagagccttgtccgggttactgccacgaggcccattaacaaggcagtgacggtgacggcgacggcgacggcaggggagacggcggcgatgaagatgggggcacttgaaaggcccaagcgtttgatctgggcattgaactatcaaactcaaaatcctgcccagttcgtgataggaatttaa
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| Protein seq | MEETKPARPTFRYRDPRHREHSSSFLLLLYALVEDAEGRLAFSNHVPFYRLRWPDGAGDGRRRCPRLAHVSVFGDGGEEPTLSLPRTCDGLVLLPNGDDVHVINPATGDVLTLPQSSRVAAAGASWRHSTGLGLDARTNTYKVARYVHLSTAAADGAAADDDGAAVMEVFTIGHGDAAAWRETTTPPPPSYPVCHVRTAIHSSGNLFWKLQLRRSPAAAAGSFLLLRFNLAHETFTVVHHPRPSSPLAPPLLSELDGELCIGLLVSGRQELWVYSNNGGGGGDDRWQWEQRFSIAVSGPDAMYLPLGVLRRHDRLLLQKGVHLYHHDSGGGEESVMEVARMDEFEFEWGFPGKPYAFMVIPYTESLVRVTATRPINKAVTVTATATAGETAAMKMGALERPKRLIWALNYQTQNPAQFVIGI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0018260 | OsCMeo_12g0018260.01 | Chr12 | 23818783 | 23822177 | - | NAM | ||
| CDS seq | atggaggagacgaagccggcccggcccacgtttcggtatagagatccccgacacagagagcactcctcctccttcctcctcctcctgtacgcgttggtggaggatgccgaggggcggctcgccttctccaaccacgtccccttctaccgcctccggtggccggacggcgccggcgatggccgccgccggtgcccgcggctcgcgcacgtgtcggtgttcggcgacggcggcgaggagcccaccctgtcgctgccccgcacctgcgacggcctcgtgctgctccccaacggcgacgacgtccacgtcatcaacccggccaccggcgacgtcctcacgctgcctcaaagcagccgtgtcgccgccgccggcgcgtcgtggcggcactcgaccgggctgggcctcgacgctcgcacaaacacctacaaggtcgctcgctacgtccacctctccaccgccgccgccgacggcgccgccgccgacgacgacggcgccgctgtcatggaggtgttcacgatcggccacggcgacgccgccgcctggagggagacgacgacgccgccgccgccgtcgtacccggtctgccacgtgcgaaccgccatccactccagcggaaacctcttctggaaactccaactccgacgatcgccggcggcggcggcgggcagcttcctcctcctccgcttcaatctagctcacgaaacgttcaccgtcgtccaccatccacggccatcatctccactggcaccgccattgctgtccgagctcgacggcgagctgtgcatcgggctgctcgtgtcaggtcggcaagagctctgggtgtacagtaacaatggcggcggcggcggcgatgatcggtggcaatgggagcagcggttcagcatcgccgtgtcggggccggacgccatgtacctgccattgggggtgcttcgccgccatgatcgactgcttcttcagaagggtgtacacctgtaccaccatgactcgggtggtggcgaggagagtgtcatggaagtggcgcgaatggatgagttcgaatttgaatggggtttcccgggaaagccctacgcgttcatggtgattccctacacggagagccttgtccgggttactgccacgaggcccattaacaaggcagtgacggtgacggcgacggcgacggcaggggagacggcggcgatgaagatgggggcacttgaaaggcccaagcgtttgatctgggcattgaactatcaaactcaaaatcctgcccagttcgtgataggaatttaa
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| Protein seq | MEETKPARPTFRYRDPRHREHSSSFLLLLYALVEDAEGRLAFSNHVPFYRLRWPDGAGDGRRRCPRLAHVSVFGDGGEEPTLSLPRTCDGLVLLPNGDDVHVINPATGDVLTLPQSSRVAAAGASWRHSTGLGLDARTNTYKVARYVHLSTAAADGAAADDDGAAVMEVFTIGHGDAAAWRETTTPPPPSYPVCHVRTAIHSSGNLFWKLQLRRSPAAAAGSFLLLRFNLAHETFTVVHHPRPSSPLAPPLLSELDGELCIGLLVSGRQELWVYSNNGGGGGDDRWQWEQRFSIAVSGPDAMYLPLGVLRRHDRLLLQKGVHLYHHDSGGGEESVMEVARMDEFEFEWGFPGKPYAFMVIPYTESLVRVTATRPINKAVTVTATATAGETAAMKMGALERPKRLIWALNYQTQNPAQFVIGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38090 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017750 | SBH | 0.0 | 972.047729 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017870 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017570 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017160 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0309600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0340700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017260 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017530 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017450 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017480 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017640 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017410 | SBH | 0.0 | 1.020206 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017070 | SBH | 0.0 | 276.367401 | 0.0 |
