Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0016020 | OGI:12054480 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:21271535-21273471 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtgttaccgtgtttattaattaccctaccaaccgtacgccaccctcccaaggggaaagaggaaaaaaaaaaaacccctcccctttcgttcccgtcgccggcggccgccgccgccgcccggaacctctgctccccctggccatggcgttccctgattgggtcatgctcgacccctacgtcttccgcgacggcccgttccccgacgacgatccgaccgcggcgatcgggcacaactcgagaggcgacaaggtcggcgtgcgcttcctgctccgcgcgccgccggagccgtccagcatcttcctggattgggaggctggcacaggggattgcgacgacttctccgtcgtcgccgcccaccgcgacgccgtcctgttccagatgggttacctggtttcgttgggccccagcaatgcctacaaggcgttcgactatttgctctaccgggcggcgggggccggcggctcttcgccgtcgctcgacttgctcgctcccttcggtggctccgtcgacgagctcaaggccaggatggaggcggacggcctgatccgcctcacgaaccagcacctccgcaggctcaagtgcctggacatcggcgtcctgtgccgcgacggcgaggagttcgccgtggcggagctccagatcaccaggtcagaggtcggtccggagctccacgtgctgcgttcttctacctccagccgcaagtgggagctcaagcggccgccgatcacccctgcgaacggcggctctctcgatctggagaaatttctctgggactgggacgccgacacggtcatcccgttcgggagctacctgtgctgggtggattactgtcttggtatcttgttctgcgacatgtttgatgagaatccacagctccactacctagagttccccgcggatgtcagaggagcatgcttcggtgggtgttgtcaggccgtgggtgtgaccaatggcgtcatgaagctcgtctctctggttcctgatgatggcctcattgctgagaattacacccctgaatctggtttcaccatcgtttgctggaccttgaggatggatgaaatggataagatggtgtgggagaaagatgccgtgctcaaatctgattatctttggtcgatgctcaaacccgattttctttggcccctagatgagttcccttttatcactaccaataggttcccaagagtgcagttccctctaatcagcatcgatgactcaagtgttatatatcttgtcttggcacagaatgggatggtggaggaggcaggatacaattacgatgaaacatggctccttgcaattgatatgagtaaaatgaccttgaaaatgtcatttccatatatcaatgatgaaatgggagatccatctcctgagatgcttgcatttgctgaggataaattctggaggtttgagccattcctcgctgctgacttctccaggcatttcaatctgcgatgccccaggcatgtcctcttaaagcccgccgaagcttgaagtcctttactcttaaagtgaaatcactttgtttctgttctgattatatggtctaatacaggttatccaagcaaatttgcatggaatcagctctactgcctcagaaaagaaaattcggttgtgctgaataccttccattggatggtccctctcttgccatattctgaattctgatgtgaagtgaacttttcttctgaattctgatgcgaacggaggtaattctgatgtgaacggaggtaattctgatgggaatgatgtatcttccaaactctgatgtgaatgagtgtgattctgatgtgaacgatgtgaatatcttctgaattcaaatgtgaatgagatgtgattgatgaatatcttctgaattatgatgcgaatgagtgtaattctgttgagaatatcttctgaattatttttgacatggaatatcttctgaatttggttgtg
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| CDS seq | atggcgttccctgattgggtcatgctcgacccctacgtcttccgcgacggcccgttccccgacgacgatccgaccgcggcgatcgggcacaactcgagaggcgacaaggtcggcgtgcgcttcctgctccgcgcgccgccggagccgtccagcatcttcctggattgggaggctggcacaggggattgcgacgacttctccgtcgtcgccgcccaccgcgacgccgtcctgttccagatgggttacctggtttcgttgggccccagcaatgcctacaaggcgttcgactatttgctctaccgggcggcgggggccggcggctcttcgccgtcgctcgacttgctcgctcccttcggtggctccgtcgacgagctcaaggccaggatggaggcggacggcctgatccgcctcacgaaccagcacctccgcaggctcaagtgcctggacatcggcgtcctgtgccgcgacggcgaggagttcgccgtggcggagctccagatcaccaggtcagaggtcggtccggagctccacgtgctgcgttcttctacctccagccgcaagtgggagctcaagcggccgccgatcacccctgcgaacggcggctctctcgatctggagaaatttctctgggactgggacgccgacacggtcatcccgttcgggagctacctgtgctgggtggattactgtcttggtatcttgttctgcgacatgtttgatgagaatccacagctccactacctagagttccccgcggatgtcagaggagcatgcttcggtgggtgttgtcaggccgtgggtgtgaccaatggcgtcatgaagctcgtctctctggttcctgatgatggcctcattgctgagaattacacccctgaatctggtttcaccatcgtttgctggaccttgaggatggatgaaatggataagatggtgtgggagaaagatgccgtgctcaaatctgattatctttggtcgatgctcaaacccgattttctttggcccctagatgagttcccttttatcactaccaataggttcccaagagtgcagttccctctaatcagcatcgatgactcaagtgttatatatcttgtcttggcacagaatgggatggtggaggaggcaggatacaattacgatgaaacatggctccttgcaattgatatgagtaaaatgaccttgaaaatgtcatttccatatatcaatgatgaaatgggagatccatctcctgagatgcttgcatttgctgaggataaattctggaggtttgagccattcctcgctgctgacttctccaggcatttcaatctgcgatgccccaggttatccaagcaaatttgcatggaatcagctctactgcctcagaaaagaaaattcggttgtgctgaataccttccattggatggtccctctcttgccatattctga
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| Protein seq | MAFPDWVMLDPYVFRDGPFPDDDPTAAIGHNSRGDKVGVRFLLRAPPEPSSIFLDWEAGTGDCDDFSVVAAHRDAVLFQMGYLVSLGPSNAYKAFDYLLYRAAGAGGSSPSLDLLAPFGGSVDELKARMEADGLIRLTNQHLRRLKCLDIGVLCRDGEEFAVAELQITRSEVGPELHVLRSSTSSRKWELKRPPITPANGGSLDLEKFLWDWDADTVIPFGSYLCWVDYCLGILFCDMFDENPQLHYLEFPADVRGACFGGCCQAVGVTNGVMKLVSLVPDDGLIAENYTPESGFTIVCWTLRMDEMDKMVWEKDAVLKSDYLWSMLKPDFLWPLDEFPFITTNRFPRVQFPLISIDDSSVIYLVLAQNGMVEEAGYNYDETWLLAIDMSKMTLKMSFPYINDEMGDPSPEMLAFAEDKFWRFEPFLAADFSRHFNLRCPRLSKQICMESALLPQKRKFGCAEYLPLDGPSLAIF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0016020 | OsCMeo_12g0016020.01 | Chr12 | 21271535 | 21273471 | + | NAM | ||
| CDS seq | atggcgttccctgattgggtcatgctcgacccctacgtcttccgcgacggcccgttccccgacgacgatccgaccgcggcgatcgggcacaactcgagaggcgacaaggtcggcgtgcgcttcctgctccgcgcgccgccggagccgtccagcatcttcctggattgggaggctggcacaggggattgcgacgacttctccgtcgtcgccgcccaccgcgacgccgtcctgttccagatgggttacctggtttcgttgggccccagcaatgcctacaaggcgttcgactatttgctctaccgggcggcgggggccggcggctcttcgccgtcgctcgacttgctcgctcccttcggtggctccgtcgacgagctcaaggccaggatggaggcggacggcctgatccgcctcacgaaccagcacctccgcaggctcaagtgcctggacatcggcgtcctgtgccgcgacggcgaggagttcgccgtggcggagctccagatcaccaggtcagaggtcggtccggagctccacgtgctgcgttcttctacctccagccgcaagtgggagctcaagcggccgccgatcacccctgcgaacggcggctctctcgatctggagaaatttctctgggactgggacgccgacacggtcatcccgttcgggagctacctgtgctgggtggattactgtcttggtatcttgttctgcgacatgtttgatgagaatccacagctccactacctagagttccccgcggatgtcagaggagcatgcttcggtgggtgttgtcaggccgtgggtgtgaccaatggcgtcatgaagctcgtctctctggttcctgatgatggcctcattgctgagaattacacccctgaatctggtttcaccatcgtttgctggaccttgaggatggatgaaatggataagatggtgtgggagaaagatgccgtgctcaaatctgattatctttggtcgatgctcaaacccgattttctttggcccctagatgagttcccttttatcactaccaataggttcccaagagtgcagttccctctaatcagcatcgatgactcaagtgttatatatcttgtcttggcacagaatgggatggtggaggaggcaggatacaattacgatgaaacatggctccttgcaattgatatgagtaaaatgaccttgaaaatgtcatttccatatatcaatgatgaaatgggagatccatctcctgagatgcttgcatttgctgaggataaattctggaggtttgagccattcctcgctgctgacttctccaggcatttcaatctgcgatgccccaggttatccaagcaaatttgcatggaatcagctctactgcctcagaaaagaaaattcggttgtgctgaataccttccattggatggtccctctcttgccatattctga
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| Protein seq | MAFPDWVMLDPYVFRDGPFPDDDPTAAIGHNSRGDKVGVRFLLRAPPEPSSIFLDWEAGTGDCDDFSVVAAHRDAVLFQMGYLVSLGPSNAYKAFDYLLYRAAGAGGSSPSLDLLAPFGGSVDELKARMEADGLIRLTNQHLRRLKCLDIGVLCRDGEEFAVAELQITRSEVGPELHVLRSSTSSRKWELKRPPITPANGGSLDLEKFLWDWDADTVIPFGSYLCWVDYCLGILFCDMFDENPQLHYLEFPADVRGACFGGCCQAVGVTNGVMKLVSLVPDDGLIAENYTPESGFTIVCWTLRMDEMDKMVWEKDAVLKSDYLWSMLKPDFLWPLDEFPFITTNRFPRVQFPLISIDDSSVIYLVLAQNGMVEEAGYNYDETWLLAIDMSKMTLKMSFPYINDEMGDPSPEMLAFAEDKFWRFEPFLAADFSRHFNLRCPRLSKQICMESALLPQKRKFGCAEYLPLDGPSLAIF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.594064 | 2.416759 | 5.286831 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0529200 | RBH | 0.998042 | 0.359942 | 3.233361 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34440 | RBH | 0.669075 | 0.228182 | 0.825112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0529200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015540 | RBH | 0.463175 | 9.962151 | 0.859154 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015680 | RBH | 0.069704 | 2.542705 | 1.200878 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015360 | RBH | 0.0 | 0.228270 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014930 | RBH | 1.099628 | 6.515272 | 6.384364 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0272900 | RBH | 1.924811 | 9.202798 | 4.39096 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015060 | RBH | 0.0 | 0.344755 | 0.592698 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0357300 | SBH | 0 | 0 | 0.000982 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015300 | RBH | 0.055563 | 0.080416 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015470 | RBH | 0.247290 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015320 | RBH | 0.599095 | 0.0 | 0.370807 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015480 | RBH | 0.128124 | 6.527419 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015560 | RBH | 0.0 | 3.133689 | 1.635915 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015170 | RBH | 0.0 | 0.0 | 0.0 |
