Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0015660 | OGI:06023380 | 8/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:20858750-20863355 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatttgcacactgtcactttggaggatgggtttttcccatttttggttcgcaaacgctctaacccatcgagaagctccatccaaattggagttgatgtgagcacttccccagaggcagaggctgagtctacaaaagggcgggagcataaaatgtaggtgagtcaattgcgtgtggccttcaagtatttcgtattgtaacaatattcgatcggcatccaaacaaaggtgcatgtacggttcctaagggatacaattttgtcttaaatcatcgagaaagattaaataagttgatagcgcgatctcgtactaacacatactctctaaatattgaagaacttgcatgcggccttcaagccacaaccgcggtatgagttctttgtttgggggctgcttgccccttcgcgtcgacaaggaaactgtggacgacaatgggtttagaattagaatagaacgaagaccctatcgaacaaatagaggaaaggacagaaaggggaaaaagtaaagtctaagcgacatatggcacgaaaaggaaatccaatttcggtaagacttgatctgaatcgtagttcagatccaagtcggttcagtgagggcgaccgcgaaagtcaccgaatgggttcggtccgtcttttcctgatctttgtttgtccccccaaaaaaaggcgtgagaggacgttgcagatgtccgggacggacacgacttcttctaacgctagaagaccacaggaagaaacccgggaccagagcatgtcgtgaaagacgcacacggggcgggcgtgcttcgaccgtgtctccggggcacagttgaatgtagatatcatgaacgcgaggataaggataccaggccgagaaacccgggcaagtactcccctaatgtgccgatcgctagcgcatccagggccccggcgcccagctccgctggagaggccgtcactgatctgaaaagtgcgtctgcggttcggatagactgattctgcgaacgcctagccccaggaatcaataaaaaacaagtgctaagtttcatttcagatcagtgaataaaccgaaaaaagagacctttctcgctcggcgccgcactatgctccgcttcaacaaatgagagttttcggtggaaccggcgaaccacgcgagctggttagatgcgtggggcagagggctcgtagtacctgatagcgcagctatgcagtggaagggaaggagcctaaatcgacccccttctttcttttttattcaaagacacaaaagcacagtacaaagagattggactctcggatgagactaagcagctaccgttccgacgcgcccctgaccctatcttgattaaaaccgaaaaccctctctaaggtggagccaagttgaagctgtcattcaaagaaaaaatgggaataaaaatccacttttagggatatagatgaagtctcgctcagtaaagagagttgtagattcgtagaagaggatcagagtacgcgcgctacaaaaggcagctagccaatgaaagtaagtggaaagaatatagtacttttgtactgacccctccggggcccccagttgttttggcgcgccctaccccaacgttagactattgcctttttagcctacgcttgctgcttcccccgccccgaagcgagactctatccagatctcaaagaataacgagctaggcggccggcgggcaaagaaagggggcgggccggccggtcggggccttggcgatacgttcttctttcaaagcgttttgccaatagagcgagggcgtccttctggggcggggcgtttacttgaaaatgccaaccgcctgttccagcagcgggggccttgcacgaaagcaaaccgcccgattaagtagcagttgcttcgctgatgggcccagtgaggggggcattgtccctcagttcttaccaacctcaggtgtgtaatcgacatctaacttattatcttcttttttcatgcaagcctgacctcagctgtccatttcttattcattcagggcgcccctagtggacttggcggtgctcctttctcaaaccagaacaactctgaacgttagggaaaataagggaagaccacctgagcgaaccaaccgaagggactttacttatccgaaccgaacgttagcggcttaagctaagcctatcacgagctgcgttgctgcttgatcggagcaagaaaacggatgcgcgtgctaacgctttcgcgctagtgcgctcaacccgttgcttgttggggaggaagatctaaaagtatggggcaaaggatcaagcgctttgactttgctttgtcccccgggatccaccacaggttgggtttgagagccgtgtgatgggtgactatctagcacggttcagagagcacgtgtatgtagtctgcgctggtgaatggaagcccccgccgcaaaaaagaagcggctcttcccacggctctgtcaccattgactctatttattattatggtaaatcattgtatcaagatgtcaatcttagatcttatttcagttcgatacgtccacctacgatactcacctttggctttcgtctcggtaggtgtattattctacattttcccaaaaggacattcattcatttctttcttccccgtcgaccactacgactaaaacgacgcgacaaatcaagacccggaaaggataagggccggtggtgggcatttgggaaagtcgggccgatcgggtgtcttcattcaagcgagggtacagaggaagaacgaaacgaagtgagaggccggggggcagggaaaagagtcgagtcgatcgaccgggagaagcaaaacgaaatcaggatttggccgaaaaagatgcaacgttatggataccatgaccgatcaccatcgagaaagaagaatttttctaaatcacttcgggtgagcggggccttcaagcatccgaaatacgccggggttgtaaatgacatagccttcctgatagaaaatgacggcccgacgagtcatctactaaaaaggaccctccccgctgtgcgcccctccttgaattattcggtcatgcaatacttttttaatacaaagaacaaaatgcatttcgaccccgtcgtagttctcaatcatttcgtggcaccgggtgtggctgaaccatctacgatggggggagcgaagggaggaagcttagataagagaatacgctctcgcatcgctttttttgtagaaagctcgaccagcgagaaaaagtgtttggcccgagccaaaaagaggttgatccacttcattcgccaagcgaatgatcttcgcttcgcgggaacaacaaaaaccaccatctcgctctttcctttcttcggtgctacctttttttttccaagggatggggttggggtgtataataacccattttttgagtatgcccgggaacaactcctaggtcaattaaggatcaaatgtaggaacctcatgggtaaggataaggtaatggaattgatagagaaattcatctacctaggtaggataggcaaattgataaagggaatagagatgatgatagagatcatactgagaaagaggataattccgtacgggtacaactcttatttgaacgaagtgcaaaaaatgcgatcttttttgtctaatagaacaaacactaataccttaattgagtcggtaaagatcaaatctgtttatcaaagtgcttctctgattgctcaagacatctcttttcaactggggaacaatccaatctcatttcgttccatttttagtcaaatagtgaaggatattccattaataatgccaaaaggggtggaggggatacgtatttgttgttctggtcgattagggggtgcggaaatagctagaactgaatgcggaaagtatggaaaaacatcttgtaatgtatttaaccagaaaatcgattatgctcttgcggaagtatccactcgtaacggaatttcaggtgtcaaagtgcggatctcatatagtcaaaataagaagggacgtgctatatccgaaacgtacgaaatatagtaaatatagtaaatgcagatgtagtaggggttgcgaaccggatggtacacaacttggttttggaagatatggcaccaaaagttgtagagctggtcgtctttcatatcgagccattgaagcagcgcgtcgggctacaatcgggcaattccatcgtgctatgagcggacaattccgaagaaattgtaagatatgggtaagagttctcgcagatcttcctattacggggaaacccgcagaagttcgaatgggaagaggaaaaggaaatcctacgggttggattgctcgtgtgtccacgggacaaatcccatttgaaatggatggtgtgagtttgtcaaatgctcgacaagccgctagattagcggcgcataaaccatgttcgtcaaccaagtttgttcagtggtcgtaacgtaattggttagtggggaaaaaccgggccgggactcaaaagaatttggcgaagtgtttgttcctgaacgagggaagtggaaagacaaagagggatagggagctcgcctccttctttttttgaatcgccgaaattgtacgacgacccttcttgttccaggcatacgactctgagacgtgacggtgtcacttttccggcccggtaaagtgacagttatat
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| CDS seq | atggcacgaaaaggaaatccaatttcgttcgatacgtccacctacgatactcacctttggctttcgtctcggtgtattattctacattttcccaaaaggacattcattcatttctttcttccccgtcgaccactacgactaaaacgacgcgacaaatcaagacccggaaaggataagggccggtggtgggcatttgggaaagtcgggccgatcgggtgtcttcattcaagcgagggtacagaggaagaacgaaacgaagtgagaggccggggggcagggaaaagagtcgagtcgatcgaccgggagaagcaaaacgaaatcaggatttggccgaaaaagatgcaacgttatggataccatgaccgatcaccatcgagaaagaagaatttttctaaatcacttcgggtgagcggggccttcaagcatccgaaatacgccggggttgtaaatgacatagccttcctgatagaaaatgacggcccgacgagtcatctactaaaaaggaccctccccgctgtgcgcccctccttgaattattcggtcatgcaatacttttttaatacaaagaacaaaatgcatttcgaccccgtcgtagttctcaatcatttcgtggcaccgggtgtggctgaaccatctacgatggggggagcgaagggaggaagcttagataagagaatacgctctcgcatcgctttttttgtagaaagctcgaccagcgagaaaaagtgtttggcccgagccaaaaagaggttgatccacttcattcgccaagcgaatgatcttcgcttcgcgggaacaacaaaaaccaccatctcgctctttcctttcttcggtgctacctttttttttccaagggatggggttggggtgtataataacccattttttgagtatgcccgggaacaactcctaggtcaattaaggatcaaatgtaggaacctcatgggtaaggataaggtaatggaattgatagagaaattcatctacctaggtaggataggcaaattgataaagggaatagagatgatgatagagatcatactgagaaagaggataattccgtacgggtacaactcttatttgaacgaagtgcaaaaaatgcgatcttttttgtctaatagaacaaacactaataccttaattgagtcggtaaagatcaaatctgtttatcaaagtgcttctctgattgctcaagacatctcttttcaactggggaacaatccaatctcatttcgttccatttttagtcaaatagtgaaggatattccattaataatgccaaaaggggtggaggggatacgtatttgttgttctggtcgattagggggtgcggaaatagctagaactgaatgcggaaagtatggaaaaacatcttgtaatgtatttaaccagaaaatcgattatgctcttgcggaagtatccactcgtaacggaatttcaggtgtcaaagtgcggatctcatatagtcaaaataagaagggacgtgctatatccgaaacgggttgcgaaccggatggtacacaacttggttttggaagatatggcaccaaaagttgtagagctggtcgtctttcatatcgagccattgaagcagcgcgtcgggctacaatcgggcaattccatcgtgctatgagcggacaattccgaagaaattgtaagatatgggtaagagttctcgcagatcttcctattacggggaaacccgcagaagttcgaatgggaagaggaaaaggaaatcctacgggttggattgctcgtgtgtccacgggacaaatcccatttgaaatggatggtgtgagtttgtcaaatgctcgacaagccgctagattagcggcgcataaaccatgttcgtcaaccaagtttgttcagtggtcgtaa
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| Protein seq | MARKGNPISFDTSTYDTHLWLSSRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESIDREKQNEIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIENDGPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGAKGGSLDKRIRSRIAFFVESSTSEKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNPFFEYAREQLLGQLRIKCRNLMGKDKVMELIEKFIYLGRIGKLIKGIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYALAEVSTRNGISGVKVRISYSQNKKGRAISETGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQWS |
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| Function | Ribosomal protein S3, mitochondrial [UniProtKB/Swiss-Prot:P46773] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0015660 | OsCMeo_12g0015660.01 | Chr12 | 20858750 | 20863136 | + | NAM | ||
| CDS seq | atggcacgaaaaggaaatccaatttcgttcgatacgtccacctacgatactcacctttggctttcgtctcggtgtattattctacattttcccaaaaggacattcattcatttctttcttccccgtcgaccactacgactaaaacgacgcgacaaatcaagacccggaaaggataagggccggtggtgggcatttgggaaagtcgggccgatcgggtgtcttcattcaagcgagggtacagaggaagaacgaaacgaagtgagaggccggggggcagggaaaagagtcgagtcgatcgaccgggagaagcaaaacgaaatcaggatttggccgaaaaagatgcaacgttatggataccatgaccgatcaccatcgagaaagaagaatttttctaaatcacttcgggtgagcggggccttcaagcatccgaaatacgccggggttgtaaatgacatagccttcctgatagaaaatgacggcccgacgagtcatctactaaaaaggaccctccccgctgtgcgcccctccttgaattattcggtcatgcaatacttttttaatacaaagaacaaaatgcatttcgaccccgtcgtagttctcaatcatttcgtggcaccgggtgtggctgaaccatctacgatggggggagcgaagggaggaagcttagataagagaatacgctctcgcatcgctttttttgtagaaagctcgaccagcgagaaaaagtgtttggcccgagccaaaaagaggttgatccacttcattcgccaagcgaatgatcttcgcttcgcgggaacaacaaaaaccaccatctcgctctttcctttcttcggtgctacctttttttttccaagggatggggttggggtgtataataacccattttttgagtatgcccgggaacaactcctaggtcaattaaggatcaaatgtaggaacctcatgggtaaggataaggtaatggaattgatagagaaattcatctacctaggtaggataggcaaattgataaagggaatagagatgatgatagagatcatactgagaaagaggataattccgtacgggtacaactcttatttgaacgaagtgcaaaaaatgcgatcttttttgtctaatagaacaaacactaataccttaattgagtcggtaaagatcaaatctgtttatcaaagtgcttctctgattgctcaagacatctcttttcaactggggaacaatccaatctcatttcgttccatttttagtcaaatagtgaaggatattccattaataatgccaaaaggggtggaggggatacgtatttgttgttctggtcgattagggggtgcggaaatagctagaactgaatgcggaaagtatggaaaaacatcttgtaatgtatttaaccagaaaatcgattatgctcttgcggaagtatccactcgtaacggaatttcaggtgtcaaagtgcggatctcatatagtcaaaataagaagggacgtgctatatccgaaacgggttgcgaaccggatggtacacaacttggttttggaagatatggcaccaaaagttgtagagctggtcgtctttcatatcgagccattgaagcagcgcgtcgggctacaatcgggcaattccatcgtgctatgagcggacaattccgaagaaattgtaagatatgggtaagagttctcgcagatcttcctattacggggaaacccgcagaagttcgaatgggaagaggaaaaggaaatcctacgggttggattgctcgtgtgtccacgggacaaatcccatttgaaatggatggtgtgagtttgtcaaatgctcgacaagccgctagattagcggcgcataaaccatgttcgtcaaccaagtttgttcagtggtcgtaa
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| Protein seq | MARKGNPISFDTSTYDTHLWLSSRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESIDREKQNEIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIENDGPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGAKGGSLDKRIRSRIAFFVESSTSEKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLFPFFGATFFFPRDGVGVYNNPFFEYAREQLLGQLRIKCRNLMGKDKVMELIEKFIYLGRIGKLIKGIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASLIAQDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYGKTSCNVFNQKIDYALAEVSTRNGISGVKVRISYSQNKKGRAISETGCEPDGTQLGFGRYGTKSCRAGRLSYRAIEAARRATIGQFHRAMSGQFRRNCKIWVRVLADLPITGKPAEVRMGRGKGNPTGWIARVSTGQIPFEMDGVSLSNARQAARLAAHKPCSSTKFVQWS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0015660 | OsCMeo_12g0015660.02 | Chr12 | 20858946 | 20863355 | + | IsoSeq | ||
| CDS seq | acaatattcgatcggcatccaaacaaaggtgcatgtacggttcctaagggatacaattttgtcttaaatcatcgagaaagattaaataagttgatagcgcgatctcgtactaacacatactctctaaatattgaagaacttgcatgcggccttcaagccacaaccgcg |
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| Protein seq | TIFDRHPNKGACTVPKGYNFVLNHRERLNKLIARSRTNTYSLNIEELACGLQATTA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 41.981827 | 137.224899 | 253.921310 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34124 | RBH | 14.254359 | 13.803178 | 37.762905 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015810 | RBH | 7.849350 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0139000 | RBH | 154.2379535 | 1055.6358335 | 719.8581845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0010150 | SBH | 29.870724 | 41.605511 | 139.089142 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010550 | SBH | 28.552364 | 37.323154 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010420 | SBH | 40.207146 | 919.023682 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010430 | RBH | 319.892578 | 1688.697632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0010330 | SBH | 13.029897 | 282.750854 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
