Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0009820 | OGI:12029070 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:10839365-10846304 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggaggcttcagtcttcatcgcgttgccccatacccgcacagagctcgggttcaggggtgccgttcgggtgctggtgttcaccatcgtgctatgcccactgttcctgctatacatgtttgggctgttcgtttctccctggatttcgctgtggcgtctaatctttcaggattacggtgagacggccggactccggagatagtagcaaggcgaacctgcggccggcgctggtggttctctattccctggctctgtttcagggtgtgctcttctattacaggaccatctctgcttacgaggaaaacaagctggtaagaaatgtggccgatgcatacgggttcgacgaggcgtcacgtggatcggtcttggattacttgcacgagatcaaggtgggatgcgagaaggacccgtcctttgccggtggtcggaacatgatcacgtacgccgcacagctgatggagtccacatcacctaacaggtacctttccataaatttcagtcacttttttttcatcccttagatgctgatccagtggttctcgtacctctccctttgttccttatatgaaaggaattaaataaattgactgtttataaaattccatgcaaaattatccaaactaagataaaaacaggggaaaaacaatatataacaagttaaaaagaagtgaaattgcgcattctatatctctacaattttaggcttaggaatgtataattttagatgactgaaactttatgtgcatagcaatactctttataaaaaagtaattttacggtcctttaggagtttccgagagatatcaaatttttaatgtaaaatttagtacctcttttacaaggtgatatcaaaatttgcatttctttttttacctttcagggatcgtaaaattactctttataaaatctccctattatcttataggtacctatctggagtaaggattcttgatacactcatccgatttaactcgggtgcaattgggagcggatttccaggacaaagtatgctgatatccaatacaattggatcagcgtcctccggctccatactccacaacttggtacagatgctggattccaaaagcccatatgacgaagagatcaggttgcgcgccgcgaggattgtggaacactttgtaatcgacatccgcttggacaagatcctgcaagggatccagtgcatatcttcgttgcttgatctcaagccatttcatcagccagatgagccacttgaggagtatggccaccgtatttctgtcggtgaagagggacagatgcaggttagaggcattcaaatccttctaaagctctccgacgacgagaacaacctgaggatcatgagcaacacggatgatctggtctggaagatagtagcacttataaacgacaaagaactacacctccggaaacatgacaaatggtcccgcgatatagtagaccctggggtgaaacttataaaacggttcatgtctgcgactacaagatcaaacaacattctatggcgcgaaatatcgacaagcttggaagcaatcagcgccttggagagtattatcgactgtgacaaatgtgacgaagaggtcaagaaacaagctataagggttctcgcacaaatatgctgggatacatcttcggttatgggtgaccagaacagagaaagattcattggctccctgatcgacatgtttcttcacaagagtaagggctcccagtttgaaaatctggcaggtgaagagctggcgcagctatctttcggatttggaagctgtgccaccatcatattggagaaatatggtcctaatatgattgattgtatcggtaaaactgattcaggcttgtacaacagcatccacaggaaaattgcagcagatgtcctgaaacacctatatggtaactattccatcgatgatgaacattttcagaatctgaaggaggccatgattgatttgttgcccaaggtatgcaatctctgacatttactacctatatcaataaacatcttttttatgataatgaaatatactataactattgattttacattgtacctttcattgtggatatatagttggatttttactatttttagaatgcaaacaccatacaacttctgatcttttttatgccaaacagagtgtctaaaagtattgctaacttcttagttaatgtcgcaggtactaagagaagtacttggttggggattgacagaaacacatatacaaagagtgatgtgaccatggctactatggatacgaccattgctcacatcatgaatcaacaagaagacatcaagatcaagtcctccatgtgctgcaatctgattcggccacgtgttacattgctgacttcaaacggccgcaaaatctacatacgtgctccgttttgggcccgtgagtacttgatggaaagctctcgaagtcctccttccaacggatccagcctcatctcggaattctatcttgtttggccacaatcacagaagcaaggtgctgcgtcacctgtattgggccaatgggcttgtaactttgtttgggaccctggcccatgtggggcccatgtggggtgcgccccaatctggtggagcacgacccttggaccctcttggtcgtcctcccacctctataaatagttaggtaccccttcagggtttctggggttttgttagattaaagtttagccattgctacttgcttgcagcgcgcgtgtcggctagaccgtccgtctgcttgttcttcggaaccccaacttatcatttgtattaaattcctatttgcaatatcagattgcttttatcttgttcttgcttgtttcttcgatttgcttgcaggaatagggttgatctgcaccggcaagatcaacaacccacggagaggtgtatcgatcgctaaggcgcaacacaacgtctcgtacggttgtagtcggatcgtcaacgtttctcccaaatcgtagttatctcaactcaccgaaagatcgggccaacaacagccttgagtgtcgagaggaactcagggttcatcaggtggtatcagagctttcgttgctcggtgagtttttatcttcctataaccagaaaatagccatacaaaaaaattcgtatcatttacctagccatattgtgccattgcattgttcttttcagtttttgctttgttgaattttgtgttgcatcgtcacgtcgtgttgctggtcttagcgtctagttcgtttagagtttcgagttctggtcacgttttgtaccacagtcgtcgctgccaccgtgtctctgttgttgtcgggacctacgaaaacggaatcggctcgctgccacggttctatttttgtagttttcagacgtttctatcggttagttttggagttcttgagttgcatctagagtttgccgatccttgtgtgtgtttgttttggccgtgcctgtgtcgtgcacgagaggaggaaggtgaattaccatatctgattttggaagtagtcaagtttgttttggaaagatatagtagattggattggttaaaaatcagtttcctttttatcccatacaccaaattcggctgccatccactccacctcctggccgagtcccactcgcccctttggccgagtccgactccctccctctcttccaccgttccgagttgtgtcaaacaccttggcgaatttttgtttggtgtcggtttcgagatctgtttggaaaaacggaaccggcataaattcagcattccattttttgtataattttaattttgggtttagacttttacatttgagtccctataaattttatatttatgtttgagtccctgtaatcttacattaaggtccttgagtcagtttttgttaaaaaaaatcaagaaaaaagtgaaaaaaaggcagaaaggtgcaaaaaaaaagaaaaaaaaagccgcaccaaaaaaaaacagaaaagaaaaggaaagaaaaaaaagaaaagaagaaagaagaaagaaagaaaagagaaaatactgttatgtttgagctgaacttcatatatcagagttgtgcatgagttgttcctagtgctatcttgtggtatcgtttgtgtctaggctcgcgtctctagtacgttctagcctaggaccagcacggtacttgactttgaacaattattcaactttgcgttctctgatttgagcatttgctattcctttgctacatatttaagcctacccagagctccacagatttgattgcagccgtacagcaagtgtttgccgaggcatcgatatatccaacctctattgggctgcttggttgagtcggtgtacatcaccattccacttgcattggtaagatcttgtaagagcttggttaaaagcttgagtgtgtgtgacatttgagctgccagtacctagtagttgataggagcgtgtatattcttgtgtatgtttcttgtttgctgctaaccatggcaggattgcgcaaggggaaacaagatggtcatgctcaacgtcaacatctacaccttcgacgagatatgacaacttcttcacgtgatgcatatgaggtacatgactataattttgcacaagttgcatgtaagttaccagtctatgatggaaagtatgattccgctgcatacattaattgggagctagcagtagaaaaacaatttgatgagtatgatttttctaatgctcaaatgattaaggctgctagtaataagtgtaccggttctgcatctttttggtggcatactgtggggaataagcttgaaacttgggatgaatgcaaaatactgatgagaaaaagatttgtgttttcatactatagacgtgctctccttgagaaatgggaacatctaaaacaaggtgacaaaactgttagggagtactttcatgattttaaaatttgtatcacttatagtggtttacaagaatctaatgagaacacaatgactagatttttcagagggcttaatttcaatattcaggctgggcttgttaatgtgacatataatcatataggccaattgttcatgcttgcttgcattgttgagcgcaaaattttggagaatccaacggagcaacaagatatgcttgtgcctcctatcactgatgttttgcaggaagttcagaaaagtctccaaaatgagaagaacgatatgtttgagatgtcacttccatcactcgcgaatgaggagaaggctgatgcagctacattatctgaagaaagttcgcaaggtaaattaaatggtgctgagagaaatgaaggtgagtattctcaaggtgagctacacttgtccacttttcatgctatagtagagcaaccattagtggaatcaattactgagttgcctttgtcacaagttgatttacttgctgtttcttgtgataaagaagagttgtgtgataatgtttcacttatatccatgccacaactagtgaatgaacatgttagttctactatttctttgtgtgctgattctaagcatgttgttcacattgctaatgaagtagaggaacgcgaattgctatcttctttaaatactttgggctatgttcagtttgatgatttttgtgagctcgataatttgaaggagaaattatttgctaaatctgatttgccatgtccaactaatgctatttttcatatctttggcgaatataatgatagaggaatatttttggtgcatagagtttacatttgttcagatttagaacatcttgtagttccggataaaatatgcaagctagagagacatgttactgctaatcatattgtctcgagtttgtcttgttttgattgcaagaaacaggttgttttcagtggactgcgcgaagagcaccatatggaaaaaccgaggacggttttctgtgaagaaggggaggatgatgtgaccatggctactatggatacgaccattgctcacatcatgaatcaacaagaagacatcaagatcaagtcctccatgtgctgcaatctgattcggccacgtgttacattgctgacttcaaacggccgcaaaatctacatacgtgctccgttttgggcccgtgagtacttgatggaaagctctcgaagtcctccttccaacggatccagcctcatctcggaattctatcttgtttggccacaatcacagaagcaaggtgctgcgtcacctgtattgggccaatgggcttgtaactttgtttgggaccctggcccatgtggggcccatgtggggtgcgccccaatctggtggagcacgacccttggaccctcttggtcgtcctcccacctctataaatagttaggtaccccttcagggtttctggggttttgttagattaaagtttagccattgctacttgcttgcagcgcgcgtgtcggctagaccgtccgtctgcttgttcttcggaaccccaacttatcatttgtattaaattcctatttgcaatatcagattgcttttatcttgttcttgcttgtttcttcgatttgcttgcaggaatagggttgatctgcaccggcaagatcaacaacccacggagaggtgtatcgatcgctaaggcgcaacacaacgtctcgtacggttgtagtcggatcgtcaacgtttctcccaaatcgtagttatctcaactcaccgaaagatcgggccaacaacagccttgagtgtcgagaggaactcagggttcatcaaagagtgccaagttatactgcaccggcaggttcaggccttgcagctacccaagacaatgacgggagattgcaggaagcattggcatccctttgtgcgaccgtgtataatagaatggtcaacacagatgcagatttggccgatcggtttgaagacattgcggcccgtatgtgcgacctggcagcggagcctctcaagaccttcagtgacctcatccaagaagcaatgcagaggcagccgccgtactatccgccggagcacgctatgcgttctaacgatgaaaatcccaacgagtgttgtatctcttga
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| CDS seq | atgggaggcttcagtcttcatcgcgttgccccatacccgcacagagctcgggttcaggggtgccgttcgggtgctggtgttcaccatcgtgctatgcccactgttcctgctatacatgtttgggctgttcgtttctccctggatttcgctgtggcgtctaatctttcaggattacggaccatctctgcttacgaggaaaacaagctggtaagaaatgtggccgatgcatacgggttcgacgaggcgtcacgtggatcggtcttggattacttgcacgagatcaaggtgggatgcgagaaggacccgtcctttgccggtggtcggaacatgatcacgtacgccgcacagctgatggagtccacatcacctaacagcggatttccaggacaaagtatgctgatatccaatacaattggatcagcgtcctccggctccatactccacaacttggtacagatgctggattccaaaagcccatatgacgaagagatcaggttgcgcgccgcgaggattgtggaacactttgtaatcgacatccgcttggacaagatcctgcaagggatccagtgcatatcttcgttgcttgatctcaagccatttcatcagccagatgagccacttgaggagtatggccaccgtatttctgtcggtgaagagggacagatgcaggttagaggcattcaaatccttctaaagctctccgacgacgagaacaacctgaggatcatgagcaacacggatgatctggtctggaagatagtagcacttataaacgacaaagaactacacctccggaaacatgacaaatggtcccgcgatatagtagaccctggggtgaaacttataaaacggttcatgtctgcgactacaagatcaaacaacattctatggcgcgaaatatcgacaagcttggaagcaatcagcgccttggagagtattatcgactgtgacaaatgtgacgaagaggtcaagaaacaagctataagggttctcgcacaaatatgctgggatacatcttcggttatgggtgaccagaacagagaaagattcattggctccctgatcgacatgtttcttcacaagagtaagggctcccagtttgaaaatctggcaggtgaagagctggcgcagctatctttcggatttggaagctgtgccaccatcatattggagaaatatggtcctaatatgattgattgtatcggtaaaactgattcaggcttgtacaacagcatccacaggaaaattgcagcagatgtcctgaaacacctatatggtaactattccatcgatgatgaacattttcagaatctgaaggaggccatgattgatttgttgcccaaggaagcattggcatccctttgtgcgaccgtgtataatagaatggtcaacacagatgcagatttggccgatcggtttgaagacattgcggcccgtatgtgcgacctggcagcggagcctctcaagaccttcagtgacctcatccaagaagcaatgcagaggcagccgccgtactatccgccggagcacgctatgcgttctaacgatgaaaatcccaacgagtgttgtatctcttga
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| Protein seq | MGGFSLHRVAPYPHRARVQGCRSGAGVHHRAMPTVPAIHVWAVRFSLDFAVASNLSGLRTISAYEENKLVRNVADAYGFDEASRGSVLDYLHEIKVGCEKDPSFAGGRNMITYAAQLMESTSPNSGFPGQSMLISNTIGSASSGSILHNLVQMLDSKSPYDEEIRLRAARIVEHFVIDIRLDKILQGIQCISSLLDLKPFHQPDEPLEEYGHRISVGEEGQMQVRGIQILLKLSDDENNLRIMSNTDDLVWKIVALINDKELHLRKHDKWSRDIVDPGVKLIKRFMSATTRSNNILWREISTSLEAISALESIIDCDKCDEEVKKQAIRVLAQICWDTSSVMGDQNRERFIGSLIDMFLHKSKGSQFENLAGEELAQLSFGFGSCATIILEKYGPNMIDCIGKTDSGLYNSIHRKIAADVLKHLYGNYSIDDEHFQNLKEAMIDLLPKEALASLCATVYNRMVNTDADLADRFEDIAARMCDLAAEPLKTFSDLIQEAMQRQPPYYPPEHAMRSNDENPNECCIS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0009820 | OsCMeo_12g0009820.01 | Chr12 | 10839365 | 10846304 | + | NAM | ||
| CDS seq | atgggaggcttcagtcttcatcgcgttgccccatacccgcacagagctcgggttcaggggtgccgttcgggtgctggtgttcaccatcgtgctatgcccactgttcctgctatacatgtttgggctgttcgtttctccctggatttcgctgtggcgtctaatctttcaggattacggaccatctctgcttacgaggaaaacaagctggtaagaaatgtggccgatgcatacgggttcgacgaggcgtcacgtggatcggtcttggattacttgcacgagatcaaggtgggatgcgagaaggacccgtcctttgccggtggtcggaacatgatcacgtacgccgcacagctgatggagtccacatcacctaacagcggatttccaggacaaagtatgctgatatccaatacaattggatcagcgtcctccggctccatactccacaacttggtacagatgctggattccaaaagcccatatgacgaagagatcaggttgcgcgccgcgaggattgtggaacactttgtaatcgacatccgcttggacaagatcctgcaagggatccagtgcatatcttcgttgcttgatctcaagccatttcatcagccagatgagccacttgaggagtatggccaccgtatttctgtcggtgaagagggacagatgcaggttagaggcattcaaatccttctaaagctctccgacgacgagaacaacctgaggatcatgagcaacacggatgatctggtctggaagatagtagcacttataaacgacaaagaactacacctccggaaacatgacaaatggtcccgcgatatagtagaccctggggtgaaacttataaaacggttcatgtctgcgactacaagatcaaacaacattctatggcgcgaaatatcgacaagcttggaagcaatcagcgccttggagagtattatcgactgtgacaaatgtgacgaagaggtcaagaaacaagctataagggttctcgcacaaatatgctgggatacatcttcggttatgggtgaccagaacagagaaagattcattggctccctgatcgacatgtttcttcacaagagtaagggctcccagtttgaaaatctggcaggtgaagagctggcgcagctatctttcggatttggaagctgtgccaccatcatattggagaaatatggtcctaatatgattgattgtatcggtaaaactgattcaggcttgtacaacagcatccacaggaaaattgcagcagatgtcctgaaacacctatatggtaactattccatcgatgatgaacattttcagaatctgaaggaggccatgattgatttgttgcccaaggaagcattggcatccctttgtgcgaccgtgtataatagaatggtcaacacagatgcagatttggccgatcggtttgaagacattgcggcccgtatgtgcgacctggcagcggagcctctcaagaccttcagtgacctcatccaagaagcaatgcagaggcagccgccgtactatccgccggagcacgctatgcgttctaacgatgaaaatcccaacgagtgttgtatctcttga
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| Protein seq | MGGFSLHRVAPYPHRARVQGCRSGAGVHHRAMPTVPAIHVWAVRFSLDFAVASNLSGLRTISAYEENKLVRNVADAYGFDEASRGSVLDYLHEIKVGCEKDPSFAGGRNMITYAAQLMESTSPNSGFPGQSMLISNTIGSASSGSILHNLVQMLDSKSPYDEEIRLRAARIVEHFVIDIRLDKILQGIQCISSLLDLKPFHQPDEPLEEYGHRISVGEEGQMQVRGIQILLKLSDDENNLRIMSNTDDLVWKIVALINDKELHLRKHDKWSRDIVDPGVKLIKRFMSATTRSNNILWREISTSLEAISALESIIDCDKCDEEVKKQAIRVLAQICWDTSSVMGDQNRERFIGSLIDMFLHKSKGSQFENLAGEELAQLSFGFGSCATIILEKYGPNMIDCIGKTDSGLYNSIHRKIAADVLKHLYGNYSIDDEHFQNLKEAMIDLLPKEALASLCATVYNRMVNTDADLADRFEDIAARMCDLAAEPLKTFSDLIQEAMQRQPPYYPPEHAMRSNDENPNECCIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0284700 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18690 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0284700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009690 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009880 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009850 | SBH | 11.324760 | 28.088892 | 50.090675 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009590 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0149900 | RBH | 0.009798 | 0.068497 | 0.0457 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0165000 | RBH | 0 | 0 | 0.0909965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009420 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009680 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009630 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009600 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009470 | RBH | 0.0 | 0.0 | 0.204994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009370 | RBH | 0.0 | 0.0 | 0.0 |
