Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0006130 | OGI:12012540 | 12/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:4691595-4695602 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccactggtcagggtcattagaaggataattccaaggtgcacctccaaaaatcaagccagcaccaggatgatgtgtggcaaataagctactcagcgcagattttgcagtttctatgtcacgtctgtcagcaccataatcccggtttatgtgaatttctcttaggcatgctggcaggtgatcaatgccaacaggtaagcaagtgccgctgcatttctcccatcccgttgcatcaagccatagctcaagcttctgtaacctgggcatagaacaagctttgaagtccaggaatggcttatgacacctgaacagcaagtgcttgagagctcggaatgccatgcccgtaccggagaagatgactctttcttctgggcacactagaagcctcaagtcgaggtgaacaagggaaggtaaacatgcaagaatagtaacaccatcatccatgggcaatgccttcctaatcgtaagcttcaagctgtgaaggtcacgaagctgtacgatccatgagggtatcctggaaaacaagcaacgttccagatggagcttccagagatggcgcggtggaggggacagtgtgctcaagccatcaacctgcaaccatgaaggaaaatgtttcagcagaacgatgttcctgaggctgccggaagatcgcgagagtcgttcaagggaacagcgcagggcttcaatacggctagtcacatcctccaagggctcactactgctgcagtcaagtttaagatctcttaagttggtcagctcaccaaggcattcaatattgctcattgagttttttattaaatcaaaccactctaggttacgcaaggatttcaggtcgccaatcccattgggcagaactgtatttgctggaataaacagctgtgacaaatggggcaaactaacaatatctgatggaatgctcaattcttctgatgtatgcagctcaattgtctccaaatgccacatcccaccaagttggctaggtagcaccaacttgacatcatgtgaaatctttaaatatctcagcagagaaaatccacagatacctgtaaggtccactctttttcccctccatctccgaggaaattcaagaagtagaactcgcacatatttgaactccaaggatgaaggcctaaaactgtttttgaaaaatgcagctgaacgaacttgcgacagtgatctattgtttgatgctggtatcacaccgtcctcttcatcagcatagtggaaagaaactcgacggatcttcgtgtgcagtcctggtgccacagtacgatcatctattacagaaaagaagttctcctcggcagacttcgacctgataatttccagcattatatcatgtattctgcaggataacacctcatcattgtaatctgtgtatatgggttgaaccatgctcctattgataagctcattgaagtagctacctgcaacatcatccacatctagaccactgattttactcacgaagccttcagctatccattgtcttaccaaatcattcttctttattatgtagtcctctggatacatactgacatatagaaggcatgtcttaagatggtgaggaaggttattgtagctcagttccagtatctgcctcattccacccaaggtaggatttccttcaaacatggacctcatagaattatttacatattcccaggtgatatatggttgaccagatagaaggctagctatactgatgattgcaagtggcaagccatcacacttttttagaatattagttgtaacctcttcaaatttatcagggaaagcttcatgggatccaaatattctactataaaagagatttcgtgaattttggtcagtaagtgatttcatctaatatatatacgcttgactgttggagcaacaggtggtagcaacagacaaaattcgtgtagttgttaataccctgctgccatacttgttctctggaaaagcacatctaataatgttccactcaaaggaatcccataaatcatctaccacaatgaagtacctgccaaaaaatttcatggatttctctacacagtatcaacgtaatgtagtacatagatgaaattgtgcaaagtgtcttacatatatctatttagaggaatagcttttcggcaagtgaaataaaatgaattactaattatctcacggggtcaatagaaaaaaggaacattgaaattcatctaacttcatgctttctttataaatagaacataagaattcctggccaatgaatcatcccaatgtactccctccgtttcaggttacaagacattttgactttagtcaaagtcaaactgtttcaagtttaactaagtgtatagaaaaaataataacattttcaacctaagacaaatttattatgaaaatatattcgattattgatttaatgaaactaatttgatattataaatattactatatttgtctataaactttgtcaaatttgaaatagtttgactttgaccaaagtcaaaacgtcttttaacctgaaacagagggagtataaggctcccatcggatggcccattaagccaaagaaaaagccaaattttaaattttcaaacttaattttgagattgattttgagatattttcaacgtagtttctttttcagcattggcttttaagttaccaagaacacatatataaaagttttacctacaaatttatttttatttcctaataagccattttggcttattagaaaaaaagcgaaatgatggggccctaatttaatgaacttaagggaactttggaatgtagcactttaaagtagtgatagtagaatttttatccatttatactcaccttattttgcatatgacattcaaagtttgaagcgcattcattacttaacctttgtacattagtattgaaaaatcagtttcatattctgagtgtcagaaatctttgtattgccgcctgaacttgcaaattgaatttcaacacttaaagcttttaaattcgaagtacttataattcaagttattatgagcacaatctacaagaattggaacgaacgtaaaagtaggaatcagaattttcatgcatttaccctttcaagttatagctttgtaggcctgataattttataggacttcacctagaatttagatggtttttttagataatgaacaatttaaatctacttatgtaatttcattttttgacaaaaacaaaagcttatgactgcaaacatagtatgatacatgagaatcattacctcttatcccgcagactatttatgatatcattgagaatcccatccaaactggtgttgtgcacagagcactgccccctaacttccaataatattctattgagaagctttggtatgtcaggtttttgagataccgacacaaacgcgccgcagtcaaatttcctttcaagcttgcggtacacttcctttgcaagcgtggttttgcctacacctccaaaacctacaatagaagccaccttcagcccttgctcttcacccatcagcaatttgaggagctcatctcttggcgcatcaattccaacaaggccagccgcctccgaatagattgcgaccactcgcgggtcaaccggaacatgtctggaattgggggtatactcatcaatcttgtacctcatgcggcgctcgctcacctctttcacaaggttcttgatctcctgaatactgttaccaatctgatggcgtgcccttatctccttcagaaatttaaccgtcttgtgaacaaatccattgcttccattgttcttgtcaagctgatgcaagaaatcatcgatgcaatcctcaatgtcataggacatctccctcacttggtctctccactccttggcctgaccatcaagctcatccatggcggcgagcttctcaagaagggccctcatgcttttcaactcgtcctccaaggaagccacctccttccggacgcctctcagcttgccgtactcttcccccatcagcgcggcgagcttggataggagggagttgatcgcaccactggaggcgctcgccat
More
|
||||||||||
| CDS seq | atggcgagcgcctccagtggtgcgatcaactccctcctatccaagctcgccgcgctgatgggggaagagtacggcaagctgagaggcgtccggaaggaggtggcttccttggaggacgagttgaaaagcatgagggcccttcttgagaagctcgccgccatggatgagcttgatggtcaggccaaggagtggagagaccaagtgagggagatgtcctatgacattgaggattgcatcgatgatttcttgcatcagcttgacaagaacaatggaagcaatggatttgttcacaagacggttaaatttctgaaggagataagggcacgccatcagattggtaacagtattcaggagatcaagaaccttgtgaaagaggtgagcgagcgccgcatgaggtacaagattgatgagtatacccccaattccagacatgttccggttgacccgcgagtggtcgcaatctattcggaggcggctggccttgttggaattgatgcgccaagagatgagctcctcaaattgctgatgggtgaagagcaagggctgaaggtggcttctattgtaggttttggaggtgtaggcaaaaccacgcttgcaaaggaagtgtaccgcaagcttgaaaggaaatttgactgcggcgcgtttgtgtcggtatctcaaaaacctgacataccaaagcttctcaatagaatattattggaagttagggggcagtgctctgtgcacaacaccagtttggatgggattctcaatgatatcataaatagtctgcgggataagaggtacttcattgtggtagatgatttatgggattcctttgagtggaacattattagatgtgcttttccagagaacaagtatggcagcagggtattaacaactacacgaattttgtctgttgctaccacctgttgctccaacagtcaagcaatatttggatcccatgaagctttccctgataaatttgaagaggttacaactaatattctaaaaaagtgtgatggcttgccacttgcaatcatcagtatagctagccttctatctggtcaaccatatatcacctgggaatatgtaaataattctatgaggtccatgtttgaaggaaatcctaccttgggtggaatgaggcagatactggaactgagctacaataaccttcctcaccatcttaagacatgccttctatatgtcagtatgtatccagaggactacataataaagaagaatgatttggtaagacaatggatagctgaaggcttcgtgagtaaaatcagtggtctagatgtggatgatgttgcaggtagctacttcaatgagcttatcaataggagcatggttcaacccatatacacagattacaatgatgaggtgttatcctgcagaatacatgatataatgctggaaattatcaggtcgaagtctgccgaggagaacttcttttctgtaatagatgatcgtactgtggcaccaggactgcacacgaagatccgtcgagtttctttccactatgctgatgaagaggacggtgtgataccagcatcaaacaatagatcactgtcgcaagttcgttcagctgcatttttcaaaaacagttttaggccttcatccttggagttcaaatatgtgcgagttctacttcttgaatttcctcggagatggaggggaaaaagagtggaccttacaggtatctgtggattttctctgctgagatatttaaagatttcacatgatgtcaagttggtgctacctagccaacttggtgggatgtggcatttggagacaattgagctgcatacatcagaagaattgagcattccatcagatattgttagtttgccccatttgtcacagctgtttattccagcaaatacagttctgcccaatgggattggcgacctgaaatccttgcgtaacctagagtggtttgatttaataaaaaactcaatgagcaatattgaatgccttggtgagctgaccaacttaagagatcttaaacttgactgcagcagtagtgagcccttggaggatgtgactagccgtattgaagccctgcgctgttcccttgaacgactctcgcgatcttccggcagcctcaggaacatcgttctgctgaaacattttccttcatggttgcaggttgatggcttgagcacactgtcccctccaccgcgccatctctggaagctccatctggaacgttgcttgttttccaggataccctcatggatcgtacagcttcgtgaccttcacagcttgaagcttacgattaggaaggcattgcccatggatgatggtgttactattcttgcatgtttaccttcccttgttcacctcgacttgaggcttctagtgtgcccagaagaaagagtcatcttctccggtacgggcatggcattccgagctctcaagcacttgctgttcaggtgtcataagccattcctggacttcaaagcttgttctatgcccaggttacagaagcttgagctatggcttgatgcaacgggatgggagaaatgcagcggcacttgcttacctgttggcattgatcacctgccagcatgcctaagagaaattcacataaaccgggattatggtgctgacagacgtgacatagaaactgcaaaatctgcgctgagtagcttatttgccacacatcatcctggtgctggcttgatttttggaggtgcaccttggaattatccttctaatgaccctgaccagtggtga
More
|
||||||||||
| Protein seq | MASASSGAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELKSMRALLEKLAAMDELDGQAKEWRDQVREMSYDIEDCIDDFLHQLDKNNGSNGFVHKTVKFLKEIRARHQIGNSIQEIKNLVKEVSERRMRYKIDEYTPNSRHVPVDPRVVAIYSEAAGLVGIDAPRDELLKLLMGEEQGLKVASIVGFGGVGKTTLAKEVYRKLERKFDCGAFVSVSQKPDIPKLLNRILLEVRGQCSVHNTSLDGILNDIINSLRDKRYFIVVDDLWDSFEWNIIRCAFPENKYGSRVLTTTRILSVATTCCSNSQAIFGSHEAFPDKFEEVTTNILKKCDGLPLAIISIASLLSGQPYITWEYVNNSMRSMFEGNPTLGGMRQILELSYNNLPHHLKTCLLYVSMYPEDYIIKKNDLVRQWIAEGFVSKISGLDVDDVAGSYFNELINRSMVQPIYTDYNDEVLSCRIHDIMLEIIRSKSAEENFFSVIDDRTVAPGLHTKIRRVSFHYADEEDGVIPASNNRSLSQVRSAAFFKNSFRPSSLEFKYVRVLLLEFPRRWRGKRVDLTGICGFSLLRYLKISHDVKLVLPSQLGGMWHLETIELHTSEELSIPSDIVSLPHLSQLFIPANTVLPNGIGDLKSLRNLEWFDLIKNSMSNIECLGELTNLRDLKLDCSSSEPLEDVTSRIEALRCSLERLSRSSGSLRNIVLLKHFPSWLQVDGLSTLSPPPRHLWKLHLERCLFSRIPSWIVQLRDLHSLKLTIRKALPMDDGVTILACLPSLVHLDLRLLVCPEERVIFSGTGMAFRALKHLLFRCHKPFLDFKACSMPRLQKLELWLDATGWEKCSGTCLPVGIDHLPACLREIHINRDYGADRRDIETAKSALSSLFATHHPGAGLIFGGAPWNYPSNDPDQW |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0006130 | OsCMeo_12g0006130.01 | Chr12 | 4691595 | 4695602 | - | NAM | ||
| CDS seq | atggcgagcgcctccagtggtgcgatcaactccctcctatccaagctcgccgcgctgatgggggaagagtacggcaagctgagaggcgtccggaaggaggtggcttccttggaggacgagttgaaaagcatgagggcccttcttgagaagctcgccgccatggatgagcttgatggtcaggccaaggagtggagagaccaagtgagggagatgtcctatgacattgaggattgcatcgatgatttcttgcatcagcttgacaagaacaatggaagcaatggatttgttcacaagacggttaaatttctgaaggagataagggcacgccatcagattggtaacagtattcaggagatcaagaaccttgtgaaagaggtgagcgagcgccgcatgaggtacaagattgatgagtatacccccaattccagacatgttccggttgacccgcgagtggtcgcaatctattcggaggcggctggccttgttggaattgatgcgccaagagatgagctcctcaaattgctgatgggtgaagagcaagggctgaaggtggcttctattgtaggttttggaggtgtaggcaaaaccacgcttgcaaaggaagtgtaccgcaagcttgaaaggaaatttgactgcggcgcgtttgtgtcggtatctcaaaaacctgacataccaaagcttctcaatagaatattattggaagttagggggcagtgctctgtgcacaacaccagtttggatgggattctcaatgatatcataaatagtctgcgggataagaggtacttcattgtggtagatgatttatgggattcctttgagtggaacattattagatgtgcttttccagagaacaagtatggcagcagggtattaacaactacacgaattttgtctgttgctaccacctgttgctccaacagtcaagcaatatttggatcccatgaagctttccctgataaatttgaagaggttacaactaatattctaaaaaagtgtgatggcttgccacttgcaatcatcagtatagctagccttctatctggtcaaccatatatcacctgggaatatgtaaataattctatgaggtccatgtttgaaggaaatcctaccttgggtggaatgaggcagatactggaactgagctacaataaccttcctcaccatcttaagacatgccttctatatgtcagtatgtatccagaggactacataataaagaagaatgatttggtaagacaatggatagctgaaggcttcgtgagtaaaatcagtggtctagatgtggatgatgttgcaggtagctacttcaatgagcttatcaataggagcatggttcaacccatatacacagattacaatgatgaggtgttatcctgcagaatacatgatataatgctggaaattatcaggtcgaagtctgccgaggagaacttcttttctgtaatagatgatcgtactgtggcaccaggactgcacacgaagatccgtcgagtttctttccactatgctgatgaagaggacggtgtgataccagcatcaaacaatagatcactgtcgcaagttcgttcagctgcatttttcaaaaacagttttaggccttcatccttggagttcaaatatgtgcgagttctacttcttgaatttcctcggagatggaggggaaaaagagtggaccttacaggtatctgtggattttctctgctgagatatttaaagatttcacatgatgtcaagttggtgctacctagccaacttggtgggatgtggcatttggagacaattgagctgcatacatcagaagaattgagcattccatcagatattgttagtttgccccatttgtcacagctgtttattccagcaaatacagttctgcccaatgggattggcgacctgaaatccttgcgtaacctagagtggtttgatttaataaaaaactcaatgagcaatattgaatgccttggtgagctgaccaacttaagagatcttaaacttgactgcagcagtagtgagcccttggaggatgtgactagccgtattgaagccctgcgctgttcccttgaacgactctcgcgatcttccggcagcctcaggaacatcgttctgctgaaacattttccttcatggttgcaggttgatggcttgagcacactgtcccctccaccgcgccatctctggaagctccatctggaacgttgcttgttttccaggataccctcatggatcgtacagcttcgtgaccttcacagcttgaagcttacgattaggaaggcattgcccatggatgatggtgttactattcttgcatgtttaccttcccttgttcacctcgacttgaggcttctagtgtgcccagaagaaagagtcatcttctccggtacgggcatggcattccgagctctcaagcacttgctgttcaggtgtcataagccattcctggacttcaaagcttgttctatgcccaggttacagaagcttgagctatggcttgatgcaacgggatgggagaaatgcagcggcacttgcttacctgttggcattgatcacctgccagcatgcctaagagaaattcacataaaccgggattatggtgctgacagacgtgacatagaaactgcaaaatctgcgctgagtagcttatttgccacacatcatcctggtgctggcttgatttttggaggtgcaccttggaattatccttctaatgaccctgaccagtggtga
More
|
|||||||
| Protein seq | MASASSGAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELKSMRALLEKLAAMDELDGQAKEWRDQVREMSYDIEDCIDDFLHQLDKNNGSNGFVHKTVKFLKEIRARHQIGNSIQEIKNLVKEVSERRMRYKIDEYTPNSRHVPVDPRVVAIYSEAAGLVGIDAPRDELLKLLMGEEQGLKVASIVGFGGVGKTTLAKEVYRKLERKFDCGAFVSVSQKPDIPKLLNRILLEVRGQCSVHNTSLDGILNDIINSLRDKRYFIVVDDLWDSFEWNIIRCAFPENKYGSRVLTTTRILSVATTCCSNSQAIFGSHEAFPDKFEEVTTNILKKCDGLPLAIISIASLLSGQPYITWEYVNNSMRSMFEGNPTLGGMRQILELSYNNLPHHLKTCLLYVSMYPEDYIIKKNDLVRQWIAEGFVSKISGLDVDDVAGSYFNELINRSMVQPIYTDYNDEVLSCRIHDIMLEIIRSKSAEENFFSVIDDRTVAPGLHTKIRRVSFHYADEEDGVIPASNNRSLSQVRSAAFFKNSFRPSSLEFKYVRVLLLEFPRRWRGKRVDLTGICGFSLLRYLKISHDVKLVLPSQLGGMWHLETIELHTSEELSIPSDIVSLPHLSQLFIPANTVLPNGIGDLKSLRNLEWFDLIKNSMSNIECLGELTNLRDLKLDCSSSEPLEDVTSRIEALRCSLERLSRSSGSLRNIVLLKHFPSWLQVDGLSTLSPPPRHLWKLHLERCLFSRIPSWIVQLRDLHSLKLTIRKALPMDDGVTILACLPSLVHLDLRLLVCPEERVIFSGTGMAFRALKHLLFRCHKPFLDFKACSMPRLQKLELWLDATGWEKCSGTCLPVGIDHLPACLREIHINRDYGADRRDIETAKSALSSLFATHHPGAGLIFGGAPWNYPSNDPDQW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.617743 | 0.814846 | 1.231285 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0237900 | SBH | 0.226269 | 0.541436 | 0.184342 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g09240 | SBH | 0.0 | 0.0 | 0.034588 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0237900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006010 | SBH | 0.189735 | 1.019745 | 1.119114 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006090 | SBH | 0.0 | 0.000000 | 0.868637 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006110 | RBH | 0.751226 | 1.238998 | 3.865141 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0075500 | RBH | 1.02176 | 7.773089 | 2.5344545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006080 | RBH | 0.208301 | 0.0 | 0.287000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0080600 | RBH | 1.2138375 | 8.7127885 | 1.7981315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005980 | RBH | 0.063978 | 0.235568 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006230 | RBH | 0.196341 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006090 | RBH | 2.532972 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006100 | RBH | 0.029887 | 0.0 | 0.252785 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006040 | RBH | 0.084586 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005870 | SBH | 0.277669 | 0.000000 | 0.367713 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006110 | RBH | 0.492649 | 12.169023 | 0.704087 |
