Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0023900 | OGI:11083360 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:27817615-27822359 | ||||||||
| Gene Symbol | WAK3, RLCK357, OsRLCK357, - | ||||||||||
| DNA seq | ttaggatgaagcgccgggcatggagctgcgggatgtgcagacggattgcttttgctcctcctcttgctgccacttgaggatcgccaaacgaagcgctctgtttgggatgagctcccggtgttggagcttcaggctcgtcatcggtgtcgtgtcgttcccgctgtcgagccaccccctgatgagctcccggtgtggggatcgttcatcacctcctgcttcacatccatcatatcaccacgagagttagattgaatcatcagatcgatcacgggttcttctcttctttttttttctctctttttcaaaatgttcagcacaacaaatcacgcatttttttattactattatctacatttcatattataagttgttttaatttcttttttctaaataaatcatcttcatgttaaactaaatgaaggcttcagcgctcagggcactgggatggcctgaaggcccaagcataccgtctccgacattttcacggcatccactttctttgtgccggggaatggtgagtctatgctcttctggtctgaccaatggatcgacggccgctcggtggcatccttggctccagatctcctcttcgtcgttccccagcatctttgaggttcgtgcacagttacttctggcctagcgaacaactcctaggtctctgatatccgtggtgccctcactgtcccggtcatctcccagtttctccttatctgggatgcggtgcttcacatacagctctcgccaggtgtcgaggatggtctcgtttggcgctggacggttgaccagcgatattctacgcgttcggcataccaggctttcttctatggccagcatttctttgcttgtgctgatcttctctagaatgcaaagggtcctgccaaatgcaggttctttctttggttcgctttccagtagcgctgctagacggctgatctcctctagaaacgtggcatcgatagtcacttggcttgccccttttgagctcaggatcttgagacggtgaccacatcctcctcgactgcatgtttgctcggcaggtctggctccgggtgttgtcgccttctagccggtctgccctaactccaccccgtggcagttggtttcaggactggtggccgtcctccagggcctgcttatctgagcacctccgcgacagtttcgactccctggtgctcctggtctcttggtgtctgtggaaggaatggaactctagggttttcgactccgctctctcttcggtcccagtggttctagagttgtccatgcggagggccatctgtggtctttagctggcgttaccgcttttggagatttgttgggagtctagcgtggcttagccccttcccgttgcttggagtctgtttttagccgccgtattttctctaagcttcagttttttcttcttttgctttttcttccttcccctagcataagccagtctggcttattgcgttgtgtaactaaaactctttttcttctaatatattgacatgcaatccttttacgcgttcgcgaaaaaactaaatttgtaacaacattttcaaacaaaagacaaaaagaaactatcaaaatatgttcaatattggatgcaatgaaactaattaggtactaagttacggaaggagatccatcattttgcaatgaaaactacataaaaaactctggacaatttcgaaatcaggccaagcgtcttaatacatatgcaaaaaaattcattattggcccaccattgattagaagatttaacttgtatgaatcgctattggtttgatacgaataatggcagttgtttcagtatgttaaggatacagatgtatccagtgttgctatatttttctataaactagatcaaattttcaggaagcttgacctttaaaaaaagtcaaagcgataattaatatggaacatactccatgaaactgagggaatacgtacctgtatgaccgggcagacgaagtcaggcggagggacgtcagacgacggcgcccttccggcggtccgcgaagcggccttcatgagggacttgactactttccacacatcgccagcgagatccggccggtccctcagtctaaacttggcgcatcgcagaccgaggtgtgcgagctggttggcctgtacgagcggccagttccccgcggagggatcgagagccgagcatagttcacctctcttaatcgcgtccttcaccacctcggcaatcctccagtcgtgattcttccccgtcagcagctgcaggatgatgattccaagggagtacacgtcactgtgcggcatcagtgttccggtcatacggtaccgcgggtccatgtacatcgaattctccatcggtccaatgacatcgggtgaggcggtgtccaagttgcccagcttgctgaccaagttggcgtcgaagaggatgtttgccggttgcaggtcaccgtggacaatcggcggcttgttcgagtggaggaaggtcagcaccgagcaaatctcatagatgatcttcgtgcgctcctgccatgtcaatggcggctgcttgtgacttctcaggcggtcgtcgaggttgcctttgggaaggaactcgtacaccagggcaaatgactcctggcaagcgccgatcagtgtgacaagattcggatgccgtactctactgatatcagcaatctgcaataatgatgttaattttggttaaacatgcatgcatggttgccaatttcattgaatggagttattaggagtgatctaatggatgaactggtagtttattaccgcctcgtcgaattcttttgattgccctcgtatgctatggccatccagcaacttgatagccacagttctgttgcggagtgtgcctttgtagacgctcccatatctacttttaccgatcatttcacaatcgaaatgtctggctgcttgtttaagctcggaggaggagaactcggtgtattgctctttccccagcttggcagaaattctctgtttgttcttctggcgcaagtcttgagcttcacttaccgcatcatcccctgaattctcctgcgttgcacaaaaatttcagtaaggagagtgcctatctcttaggttttcaacttgcacagaacatcaagcgatatataccagctcgcgaggagatgcaaaatggtcatcatcaggttcatacaagggctgctgggctgctcgcctggttgatccagataccctgactatatcactatttattgatgaaggtttttcgtgataccctgaaggtttttggcactatctcaactatatcgatgaatggtgtcggtgatattgcaggaacagttgtatttccttcccttcagtgttgacagacaagtttaatcagcattttttcacatgttattcaatgtgcttttctgatattagtatcattgaaaactatcaaccataagactgctttggccctgctttccttaaccctacctggtacatatcagatgaccattatgggtaaaccatatcttacatgatggctctgctgcttcccatattttgcgtgctttcatggacattggtctcctgcatatttggaacaatttcaggatctaaaatataagagaacttgagaaacctttctatttctcatttcttgctagcagcatacatcgactactttttttggggaatacataaaaggattacacaccttcgtactatacttcgactgctacttatcacgatagaatcaacattttgtgatgcaattttaaatgttcaatgtgtatgctaaaatgctagttatttttagaaatatcaaaaatatgacattagaagagaaaaaaatcaggttgtggtccatgagattagaaaaaaataagagcaattttacaatccttgaagaggtactatgaggttccacttttttattataaatttggtacctcttgatacttagatactacgaggtaccaaattttacattaattttttggtacctcatggtacctacttaaggaccgtaaaactgctcataaaaaacaggttgtgctctataccccgagttgtgtctgcatgctgctgttcccatgacaagcttggtgatgccatgaatggcgataagatcttcaagccctttagctatatcctcctcctcaattattagtttctcacaacttacctggaaaacaaaacaaacaatcacattataatttaagatatacatagaaaagaacgaatgactggtggttcatgatagagataattaaaagaggggaagagcacctttaattctctgcatattagaagatattggtctagtttctcttctgccttttctcgctcctttttcctatagtagttcactaaccgtggatcgagcactttatgatgaattggccccagtgctgaaattagcaataggtcgacatagttagtcaaattaagactcaaagcaaaaggtgggatcccgatcgaaattctcgcaaaatcatccaaacgacaagctatccaatcttgagtctctcatgtgatgatgtgataaaaccaaacctaaaagccttacccgtgggtaccatacgagcggggcggtggacgtgagcaatcacgatcttggtgccatccttggcaaggttcagcagcgcccactgcaaggtgctcttgccgttcacgacatcggcgccgagggccacaaacaccttgtccgccgctgctgccggcctcgcctcccccacctccaccgcctctacctcgctggatatgtctgctgccgaactgccagggacatgaaggtaatagggatg
More
|
||||||||||
| CDS seq | atggagaccaatgtccatgaaagcacgcaaaatatgggaagcagcagagccatcatggtatctggatcaaccaggcgagcagcccagcagcccttgtatgaacctgatgatgaccattttgcatctcctcgcgagctggagaattcaggggatgatgcggtaagtgaagctcaagacttgcgccagaagaacaaacagagaatttctgccaagctggggaaagagcaatacaccgagttctcctcctccgagcttaaacaagcagccagacatttcgattgtgaaatgatcggtaaaagtagatatgggagcgtctacaaaggcacactccgcaacagaactgtggctatcaagttgctggatggccatagcatacgagggcaatcaaaagaattcgacgaggcgattgctgatatcagtagagtacggcatccgaatcttgtcacactgatcggcgcttgccaggagtcatttgccctggtgtacgagttccttcccaaaggcaacctcgacgaccgcctgagaagtcacaagcagccgccattgacatggcaggagcgcacgaagatcatctatgagatttgctcggtgctgaccttcctccactcgaacaagccgccgattgtccacggtgacctgcaaccggcaaacatcctcttcgacgccaacttggtcagcaagctgggcaacttggacaccgcctcacccgatgtcattggaccgatggagaattcgatgtacatggacccgcggtaccgtatgaccggaacactgatgccgcacagtgacgtgtactcccttggaatcatcatcctgcagctgctgacggggaagaatcacgactggaggattgccgaggtggtgaaggacgcgattaagagaggtgaactatgctcggctctcgatccctccgcggggaactggccgctcgtacaggccaaccagctcgcacacctcggtctgcgatgcgccaagtttagactgagggaccggccggatctcgctggcgatgtgtggaaagtagtcaaggggtggctcgacagcgggaacgacacgacaccgatgacgagcctgaagctccaacaccgggagctcatcccaaacagagcgcttcgtttggcgatcctcaagtggcagcaagaggaggagcaaaagcaatccgtctgcacatcccgcagctccatgcccggcgcttcatcctaa
More
|
||||||||||
| Protein seq | METNVHESTQNMGSSRAIMVSGSTRRAAQQPLYEPDDDHFASPRELENSGDDAVSEAQDLRQKNKQRISAKLGKEQYTEFSSSELKQAARHFDCEMIGKSRYGSVYKGTLRNRTVAIKLLDGHSIRGQSKEFDEAIADISRVRHPNLVTLIGACQESFALVYEFLPKGNLDDRLRSHKQPPLTWQERTKIIYEICSVLTFLHSNKPPIVHGDLQPANILFDANLVSKLGNLDTASPDVIGPMENSMYMDPRYRMTGTLMPHSDVYSLGIIILQLLTGKNHDWRIAEVVKDAIKRGELCSALDPSAGNWPLVQANQLAHLGLRCAKFRLRDRPDLAGDVWKVVKGWLDSGNDTTPMTSLKLQHRELIPNRALRLAILKWQQEEEQKQSVCTSRSSMPGASS |
||||||||||
| Function | U-box domain-containing protein 70 [UniProtKB/Swiss-Prot:Q5WA76] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0023900 | OsCMeo_11g0023900.01 | Chr11 | 27817615 | 27822359 | - | NAM | ||
| CDS seq | atggagaccaatgtccatgaaagcacgcaaaatatgggaagcagcagagccatcatggtatctggatcaaccaggcgagcagcccagcagcccttgtatgaacctgatgatgaccattttgcatctcctcgcgagctggagaattcaggggatgatgcggtaagtgaagctcaagacttgcgccagaagaacaaacagagaatttctgccaagctggggaaagagcaatacaccgagttctcctcctccgagcttaaacaagcagccagacatttcgattgtgaaatgatcggtaaaagtagatatgggagcgtctacaaaggcacactccgcaacagaactgtggctatcaagttgctggatggccatagcatacgagggcaatcaaaagaattcgacgaggcgattgctgatatcagtagagtacggcatccgaatcttgtcacactgatcggcgcttgccaggagtcatttgccctggtgtacgagttccttcccaaaggcaacctcgacgaccgcctgagaagtcacaagcagccgccattgacatggcaggagcgcacgaagatcatctatgagatttgctcggtgctgaccttcctccactcgaacaagccgccgattgtccacggtgacctgcaaccggcaaacatcctcttcgacgccaacttggtcagcaagctgggcaacttggacaccgcctcacccgatgtcattggaccgatggagaattcgatgtacatggacccgcggtaccgtatgaccggaacactgatgccgcacagtgacgtgtactcccttggaatcatcatcctgcagctgctgacggggaagaatcacgactggaggattgccgaggtggtgaaggacgcgattaagagaggtgaactatgctcggctctcgatccctccgcggggaactggccgctcgtacaggccaaccagctcgcacacctcggtctgcgatgcgccaagtttagactgagggaccggccggatctcgctggcgatgtgtggaaagtagtcaaggggtggctcgacagcgggaacgacacgacaccgatgacgagcctgaagctccaacaccgggagctcatcccaaacagagcgcttcgtttggcgatcctcaagtggcagcaagaggaggagcaaaagcaatccgtctgcacatcccgcagctccatgcccggcgcttcatcctaa
More
|
|||||||
| Protein seq | METNVHESTQNMGSSRAIMVSGSTRRAAQQPLYEPDDDHFASPRELENSGDDAVSEAQDLRQKNKQRISAKLGKEQYTEFSSSELKQAARHFDCEMIGKSRYGSVYKGTLRNRTVAIKLLDGHSIRGQSKEFDEAIADISRVRHPNLVTLIGACQESFALVYEFLPKGNLDDRLRSHKQPPLTWQERTKIIYEICSVLTFLHSNKPPIVHGDLQPANILFDANLVSKLGNLDTASPDVIGPMENSMYMDPRYRMTGTLMPHSDVYSLGIIILQLLTGKNHDWRIAEVVKDAIKRGELCSALDPSAGNWPLVQANQLAHLGLRCAKFRLRDRPDLAGDVWKVVKGWLDSGNDTTPMTSLKLQHRELIPNRALRLAILKWQQEEEQKQSVCTSRSSMPGASS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.802423 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0616100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g46880 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0691500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024550 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020570 | SBH | 0.278253 | 1.146408 | 1.968923 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024010 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017210 | SBH | 0.127119 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0448400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0441900 | SBH | 0.753499 | 8.335875 | 0.9467565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020710 | SBH | 0.0 | 0.219807 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020860 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020160 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020270 | SBH | 0.159030 | 3.195127 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020280 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
