Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_11g0020570 | OGI:06027190 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr11:23894672-23898652 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCGCCACCACAAGCGCCGCTGCACTCCCCCCGGCAAACCCTAATCGTCGCCACGACCTCCTCCTCTCTCCCCTGCTGTCACCCTTCCGTTTCGCCGCCAGCGCGACGGCTCCCCTCCCCACCGACCGCGTCGCGAACTCGCGATACGCCTCCGACGCCCGTGCCCCCCTCCAGCGACAGCGGCGCCGCCCCTCACCGCTACCACGCAGCCGGCGCCCGGTCCCTCCTGCCGACCGCGTCGCGAGACGCCTCCCTCATGATTGACGCGCTTTGTTCTGGGTTGGGCACAGTAAGCTGAAGTACCTCGTCGCCAGCTCCCTCTCCGAGGCCTGCAACAACTCCGTCCTGCTCCTCAGGCCCTGCGGCTGCGGAAAAGCCGCGGTGAGGTTTTCCTTCTGCTTCCCCTTTCAGCAGTTTTCTGGAATGCGGGGGTGGTGTTCGACGAAATGTGCCAGTGGGCGGTCTACCACTTTATGCTATCGGTTGTTTTGGCCTGGACTGATATTTCAATTCTTCGCAGGTGGTCGACATGGTTCTAGACGATCTGAAGAAGGAGCATCCTGATGCAATATCCTGACTTTACTTGTTGCTAGAAATGTATCCATGTATTTGCGTAATACACGACCGATGATTTACCTATGTTGGCTGTGAAATAAACATACAGGTTACGAGAAAATAGTTTGTTTCAGGGCGCTTTAGGGCGGAAGGGGACAAGGATAAATGTAGAAATTCCTTTCATATTTTTATGTTCTCAAATGCATGGCCTAGCCAAAAGGGCAATATATCATAATGCACAATTAGTTAGACTTTGTTAACTTGTAGTTCAGTTGGATCATTGTGCAAACTTTTTTCAGATCAGGCTGAATGGGATGCTACATAGTGATGACAACTGTGCCACGAAGGTTAGAGCTTTCTGATGCCAGCTTTTTTGGTTCAATTTCTGTATTCCACATGCTCTCTGAACCAGATCTCCCTCTCTCTTAACTCCTGTCAACCAATTCAGTTAACTCCATAGTTGTTTCTATGCTTTATCAACTCCAATGCAGCCATGCTAATGCTTTTGTTACTTTGCTTTTAAGGAAATTGCGAGGCAACTTTGTTTGGAACATCAGTTATCATTTCCCAAAATGGTGTGTGGCGTCTACTCTAGCCTTCACTCTCTCAATTATTGTTCTTTTTATCATTTTAAAAGATCTTATCTCTTTTAGGCTTCTTCAGATGACAACACGGAATTCATGATTGACATGTTACGGTAAGTGAAGTGTTAACATGATGAGCATCTGTACATCATGGAGACATCCTTTTTCCTGGGTGAATTTCACCTAATCTGAGCCATCCTTTTACTTCTATGGCTGAGATCACCGTTTTCTAATTAACAACCCTTATACTCAGTTTAGATGTGGAGGTAATATACATACTTTTCTCTTCATGTAGCGATGATGAGGAAGATCGGTACTGAGGACCGGCACCAGTGGCATCTTATGTATGGTTTCAGATGTACTAGGGATGTATGTATGTGGCATCTTATGTATGGTTTCAGATGTACTAGGGATGTATGTATGGTTTCAGATCGTGGTTTTGGATGAATAAATTGAGTTTAGGTTTTAGTGCAACCTTGTCTCTTGCATGAGTGGGGATCGTTGGGGTCTTACAGAATGCATGACAAAATGGATTCCGGTAGAAAAAATGCCACAAAACATGCATTTTATTAACAAGATATTCTGGATCCTTTTTATGCATAAGAAGAGATACATCGGCCATATGATTTTCAACTACTCTTGTGCGGGACTGCTACTCTTATCCACAAAACATAATATACTCTTACTCGCACCGTGTATATTATATATTTACCTCGAGCATAGTAACAGATTCAATTTCTATCTCGAATGGTGCTTCAAACAATATATATGTGGGGTTGTTTTTTTGGCCCTTATCTTTTTTAATCTTCCTTCCTCTTTTCTCTGTGTAAAAATATACGATACAGCTCGAAATGTATTGTTTTTTATATGTTCATCGGCCTGTTCTTGTTTGCTATAGGAAGTATGTTTGATAAATAGTATGTTTCATATAGGAGCTTTTTCCCTCCAATTTCTTATCATGTATGGCATTTCCAATAACTTTTCGCGGTACCGTCACGATGGCTTGCATGTATAAGAGTTAGACGGGAAGGGCCTGTAACTATAGGAGGTACCATGATTGTATTGGATTGCTTTTACTTTTACAAAACATTATTTTTTAATAAAAAGGAATAATACTGTATTTCGATATCCTAATTTCTTGTATTGCAGGTTATGTATTCTGTAATTCGTCGTGTTTGGTGGTTGTACTATATCTTGCTGGTTTACAGTAGGACCCTGTGATTTTATATCATGATTTCTTGTATAGTATTTTTCATTGAATGCTTTGTTGTTAATGCTGTCCCACATCAACTATTTGTAGGACCAGTTGGGTCTGTCGAGTCTCATAAAGAAGAGGAGGTCTGGTTCATCAAATATCTCCATCAAAGCGGTAGGGCTTGGGAGAGGCCAAAGGTATGTTTTTTTTTCAGCTTGCATTACATTGTTTTCTTACTAGAATTAGTGGCATTCAGTGGTCTTATTTACTGGAATTCGTTAGTATGCATTTTGTTGGTATGCACTAACAGAGAAGGACCTTGTTAGAGAGAAAAACTGAAAAATCATTTGTCTGAAAATTGGTTGTGAATTTTAGTTCTTTATATCCCCGAGGAATGCAAATATTATCTGGTTTATGTACGGCTTATTTCGGTGGCTTTCAGATATAAAAGAAGGGAAAAAAAGAGCAGTGACTGTAGCAAGTGTGGAGAGTTACTTAACTGAATCAAGCTCATAATCCCTTTTCTGAATATGACCAAACAACTTTTTTTTATAGAGTTTCACAAGAAAATACTGTGTCTATATATTTGTAAGATAGACAGAAATTGTGTGAAGTGTATGGAATCTGGGCCCATAAGCTATAGAATTACATATCTATGCTGCTAGCTAAAAATGTATACCTAATAATGTTGCACACAGTTATTATCTTTAAGGTTGCTTGAATCATTTATGTCTCATAATATTGTTAATTTCCCTTATTGGTGGTCTCTAGCTATGATTGTATAGTAAGATGTTGCAGAACATGAAGGTAACAGTAGGATATACGAGATTCGGCCACTTATTGCCATATTTCCTTTTAATTTGATCAATGCAAATCTTGCAAAACAAATATTATTACACTTGTGGTCGAAGTTTATTCCTCGGTAGTGGTGTAGGAAGTTGTGATACTCATATTTTGTGCTCTAGAATATGTTTACATATAGTTTAATTCAGGTTAAACACTAAACACTGTCCAAATTTTGAGAAAATTAGGGCAAATATAAGGAGTAGAAAAATAATTATTTGTTGAGGAATCGGAATAAATGGAAATTCTTTGATGTATGGAAGAACTAAAACTAAAATAAAATCTTAGTATGCACACTAAGATTTCTCCGATTTTATTTTGCAATTTTAGAATTATGGTTGTCCAATACTATAAAATTCAGATACAACATATGCCAAATTCAGAAAATAGGGTCATAAACTCGTACTAGCTACAGTGTACATCTACTGTAAACTAAAATGCAATCTTAAAAATAAAATCATGTTTCCTCCATTTGTGCTCACCACAAATGAATCGGTCCATAAAATTCCTCAATTTCTCTTCCTCTCCCATAGTGTGTCCTGGAATTAGTTTTGCTGAAAGATTGTAGTGTACGTATGCATTGATGGCTAAACGTTTTCACATGTGTATTTGACAGCTCATGTTCGACTTGAAGCAAACAGGAAGCTTTCTCCATTAGAAGGAATTAAATTGATGAAGAAGGTAGCACATACTTTGATAACTGCCAAAGATGCAAGCCTGGCTAAGTAGTCACACGTGAAATGGCCGTGCTCAACTCTGGACTTATATAGATGAGATAGTTCATTTCGAGAGCATATATCGTGG
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| CDS seq | ATGCTACATAGTGATGACAACTGTGCCACGAAGGAAATTGCGAGGCAACTTTGTTTGGAACATCAGTTATCATTTCCCAAAATGGACCAGTTGGGTCTGTCGAGTCTCATAAAGAAGAGGAGGTCTGGTTCATCAAATATCTCCATCAAAGCGGTAGGGCTTGGGAGAGGCCAAAGTATGCATTTTGTTGCTCATGTTCGACTTGAAGCAAACAGGAAGCTTTCTCCATTAGAAGGAATTAAATTGATGAAGAAGGTAGCACATACTTTGATAACTGCCAAAGATGCAAGCCTGGCTAAGTAG |
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| Protein seq | MLHSDDNCATKEIARQLCLEHQLSFPKMDQLGLSSLIKKRRSGSSNISIKAVGLGRGQSMHFVAHVRLEANRKLSPLEGIKLMKKVAHTLITAKDASLAK |
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| Function | Origin of replication complex subunit 4 [UniProtKB/Swiss-Prot:Q5N8Q4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_11g0020570 | OsCMeo_11g0020570.01 | Chr11 | 23894672 | 23898652 | + | NAM | ||
| CDS seq | ATGCTACATAGTGATGACAACTGTGCCACGAAGGAAATTGCGAGGCAACTTTGTTTGGAACATCAGTTATCATTTCCCAAAATGGACCAGTTGGGTCTGTCGAGTCTCATAAAGAAGAGGAGGTCTGGTTCATCAAATATCTCCATCAAAGCGGTAGGGCTTGGGAGAGGCCAAAGTATGCATTTTGTTGCTCATGTTCGACTTGAAGCAAACAGGAAGCTTTCTCCATTAGAAGGAATTAAATTGATGAAGAAGGTAGCACATACTTTGATAACTGCCAAAGATGCAAGCCTGGCTAAGTAG
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| Protein seq | MLHSDDNCATKEIARQLCLEHQLSFPKMDQLGLSSLIKKRRSGSSNISIKAVGLGRGQSMHFVAHVRLEANRKLSPLEGIKLMKKVAHTLITAKDASLAK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.443267 | 0.0 | 2.918770 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020700 | RBH | 0.0 | 0.0 | 7.611000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020100 | RBH | 0.030297 | 0.069488 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0364600 | RBH | 0.7700855 | 2.3246985 | 1.2698795 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021120 | RBH | 0.247347 | 0.0 | 0.133796 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0383000 | RBH | 0.747094 | 1.577835 | 1.862808 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020910 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021050 | RBH | 0.167802 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020360 | RBH | 0.000000 | 0.0 | 0.243240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020480 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020810 | RBH | 0.0 | 0.0 | 0.000000 |
